Advanced Search (OLGA)

Gene: CSDE1 (cold shock domain containing E1) Sus scrofa

Analyze

Symbol:

CSDE1

Name:

cold shock domain containing E1

RGD ID:

14171185

Description:

ENCODES a protein that exhibits lncRNA binding (inferred); nucleic acid binding (inferred); RISC complex binding (inferred); INVOLVED IN CRD-mediated mRNA stabilization (inferred); IRES-dependent viral translational initiation (inferred); negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (inferred); ASSOCIATED WITH genetic disease (ortholog); hereditary spastic paraplegia 47 (ortholog); RASopathy (ortholog); FOUND IN cytosol (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

cold shock domain containing E1, RNA-binding; cold shock domain-containing protein E1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	105,804,587 - 105,845,733 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	115,990,371 - 116,034,488 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

hereditary spastic paraplegia 47 (ISO)

RASopathy (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

CRD-mediated mRNA stabilization (IEA)

IRES-dependent viral translational initiation (IEA)

negative regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay (IEA)

nuclear-transcribed mRNA catabolic process, no-go decay (IEA)

positive regulation of cytoplasmic translation (IEA)

positive regulation of translation (IEA)

stress granule assembly (IEA)

Cellular Component

CRD-mediated mRNA stability complex (IEA)

cytoplasm (IEA)

cytosol (IEA,ISO)

Golgi apparatus (IEA)

mCRD-mediated mRNA stability complex (IEA)

plasma membrane (IEA)

Molecular Function

lncRNA binding (IEA)

nucleic acid binding (IEA)

protein binding (ISO)

RISC complex binding (IEA)

RNA binding (IEA)

RNA stem-loop binding (IEA)

References

Additional References at PubMed

PMID:22301074

Genomics

Comparative Map Data

CSDE1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	105,804,587 - 105,845,733 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	115,990,371 - 116,034,488 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CSDE1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	114,716,916 - 114,757,984 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	114,716,913 - 114,758,676 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	1	115,259,537 - 115,300,605 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	115,061,060 - 115,102,147 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	1	113,488,779 - 113,529,908 (-)	NCBI		Celera
Cytogenetic Map	1	p13.2	NCBI
HuRef	1	113,117,993 - 113,159,121 (-)	NCBI		HuRef
CHM1_1	1	115,374,336 - 115,415,479 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	114,728,361 - 114,769,423 (-)	NCBI		T2T-CHM13v2.0

Csde1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	102,927,347 - 102,965,502 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	102,927,742 - 102,965,502 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	103,020,431 - 103,058,186 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	103,020,426 - 103,058,186 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	102,824,469 - 102,862,112 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	103,149,692 - 103,187,240 (+)	NCBI		MGSCv36	mm8
Celera	3	105,225,421 - 105,263,064 (+)	NCBI		Celera
Cytogenetic Map	3	F2.2	NCBI
cM Map	3	45.25	NCBI

Csde1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	193,234,546 - 193,271,301 (+)	NCBI		GRCr8
mRatBN7.2	2	190,546,015 - 190,582,787 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	190,554,980 - 190,582,784 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	198,152,478 - 198,180,272 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	196,024,877 - 196,052,699 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	190,842,171 - 190,869,965 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	205,525,194 - 205,552,987 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	205,525,204 - 205,552,991 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	224,955,782 - 224,983,574 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.1	2	198,226,179 - 198,255,228 (+)	NCBI
Celera	2	183,028,421 - 183,056,128 (+)	NCBI		Celera
Cytogenetic Map	2	q34	NCBI

Csde1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955435	18,008,352 - 18,050,329 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955435	18,009,228 - 18,050,329 (-)	NCBI	ChiLan1.0	ChiLan1.0

CSDE1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	107,379,136 - 107,420,513 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	106,973,319 - 107,014,750 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	87,796,518 - 87,837,602 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	122,849,898 - 122,890,959 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	122,849,903 - 122,890,959 (+)	Ensembl	panpan1.1		panPan2

CSDE1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	17	52,418,978 - 52,458,427 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	17	52,420,048 - 52,458,329 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	17	52,069,582 - 52,109,078 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	17	53,296,332 - 53,335,791 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	17	53,296,335 - 53,335,733 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	17	52,330,468 - 52,369,923 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	17	52,372,669 - 52,412,187 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	17	52,945,996 - 52,985,466 (-)	NCBI		UU_Cfam_GSD_1.0

Csde1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	14,366,354 - 14,403,092 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936627	85,894 - 122,592 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CSDE1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	18,913,195 - 18,953,727 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	18,913,230 - 18,953,755 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	21,667,257 - 21,707,843 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Csde1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624772	10,369,447 - 10,406,718 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in CSDE1
889 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003481484	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005655415	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005655416	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005655417	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021090004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021090005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000024	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK348347	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389800	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK389876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391255	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK400125	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU151855	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU393558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01031939	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000044302 ⟹ ENSSSCP00000057604

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	105,804,604 - 105,845,733 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000048448 ⟹ ENSSSCP00000053136

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	105,820,965 - 105,845,350 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000064093 ⟹ ENSSSCP00000050736

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	4	105,804,587 - 105,845,724 (+)	Ensembl

RefSeq Acc Id:

XM_003481484 ⟹ XP_003481532

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI

Sequence:

show sequence

TTCGTGCGCAGGCGTGTTAGGGATACGCTCCACCCCCCCTTCCTGTGCACGCGCTCGGAGCCCG
CAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCT
GGAGAGGGGGCGCTGAGCTGTTGGGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTG
CTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCTCGAAACAACCAACAAGACCAAAGAAGAGT
ACACTTAAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTT
GAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGC
CCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGATAGATCATTTTCTCTCGCTCTTTTTTTT
TTTTTTTTTTTTTTTTTAATACTAGCAACTTTCATCCTTTGAAACGTGTGCTGAAGAAGAAGAA
TCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGCTGTTTGAGATGGAGAACG
TTTTTACTGTGTCATCAGATCCTCATCCCCCTCCTGCAACCCCTCCTTCACTTTCTTTACCTTT
ATCTTCATCTTCTACCTCATCTGGAACTAAAAAACAAAAGAGGACCCCCACCTATCAGAGATCT
ATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAG
CAGCACTGCGTGAAACTGGGGTTATTGAAAAACTGCTAACCTCTTATGGATTTATTCAGTGTTC
AGAACGTCAAGCTAGACTTTTCTTCCACTGTTCGCAGTATAATGGCAACCTGCAGGACTTAAAA
GTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGTAGGACTGGGAAACCCATTGCTGTTA
AACTGGTGAAGATAAAGCAGGAAATCCTCCCTGAAGAACGAATTAATGGACAAGTTGTGTGCGC
TGTTCCTCACAACTTAGAGAGTAAATCTCCAGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTA
TGCTACGAACGTAATGGGGAAGTGTTTTATCTGACTTACACCCCTGAAGATGTCGAAGGGAATG
TTCAGCTGGAAACTGGAGATAAGATAAACTTTGTAATTGATAACAATAAACATACTGGTGCTGT
AAGTGCTCGTAATATTATGCTGTTGAAAAAGAAACAAGCCCGTTGTCAGGGAGTAGTTTGTGCC
ATGAAGGAGGCGTTTGGCTTTATTGAAAGAGGTGATGTTGTAAAGGAGATATTCTTTCACTATA
GTGAATTTAAGGGTGACTTAGAAACCTTACAACCTGGAGATGACGTGGAATTCACAATCAAGGA
CAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACTCTTGCCTCAAGGAACAGTCATTTTTGAA
GATATTAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAA
ACCAGAATGACCCATTGCCAGGACGCATCAAAGTTGATTTTGTGATTCCTAAAGAACTTCCCTT
TGGAGACAAAGATACAAAATCCAAGGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATT
TCAACAGACCGTCGTGACAAATTAGAACGAGCAACCAACATAGAAGTTCTATCAAATACATTTC
AGTTCACTAATGAAGCCAGAGAAATGGGTGTAATTGCTGCCATGAGAGATGGTTTTGGTTTCAT
CAAGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAG
CTCCATATTGCAGATGAAGTAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATC
ATGCTATTAGGATTAAAAAGCTTCCCAAGGGCACGGTTTCATTCCACTCTCATTCAGATCATCG
TTTTCTGGGCACTGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCAAATAAA
GGCAAAGAAAAGGAAGCCGAGGATGGTGTAATTGCTTATGATGATTGTGGGGTGAAGTTGACTA
TTGCTTTTCAAGCCAAGGATGTGGAAGGATCTACTTCTCCTCAAATAGGAGACAAGGTTGAATT
CAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTGCAACTTGTGTACGACTCTTAGGTCGT
AATTCCAACTCCAAGAGGCTCTTGGGTTATGTGGCAACTCTGAAGGATAATTTTGGATTTATTG
AAACAGCCAATCATGATAAGGAAATCTTTTTCCATTACAGTGAGTTCTCTGGTGATGTCGATAG
CCTGGAACTGGGGGACATGGTTGAATACAGCTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCA
GAAAAAGTGAGCAAAACACACTCAGTGAATGGCATTACTGAGGAAGCTGATCCCACCATCTACT
CTGGTAAAGTCATTCGCCCCTTGAGGAGTGTTGATCCAACGCAGACTGAGTACCAAGGAATGAT
TGAGATTGTGGAGGAAGGGGATATGAAGGGTGAGGTCTATCCATTTGGCATAGTTGGGATGGCC
AACAAAGGGGATTGCCTACAGAAAGGGGAGAGTGTCAAGTTCCAATTGTGTGTCTTGGGCCAAA
ATGCACAGACTATGGCCTACAACATCACACCCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGA
TCAGTTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTTTTTTTCCATGTGAAAGAA
GTTCAGGATGGCATTGAGCTGCAGGCAGGAGATGAAGTGGAATTCTCAGTGATTCTTAATCAGC
GCACTGGCAAGTGCAGTGCCTGTAATGTTTGGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGC
TCCACGACCTGATAGGCTGGTCAATCGTTTGAAGAACATCACCCTGGATGATGCCAGTGCTCCT
CGCCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAA
AGATCCGTCAAGCTGGTGTCATTGACTAACCACATCCACAAAGCACATCATTAATCCACTATGA
TCAAGTTGGGGGGATTCTGGTGAAGGGTTCTGAATATCTCCCTTTTCATCCCTCCCAAAATCTG
GAATACTTATTATATTGAGCTATTACACCAGTTTTAACACCTTCCTCGTGTTATGTTTAAAAAA
ATAAATAAATTTAAGAAAACCATTTTAAAATTATGCACAGTTGCAGCCTGGAAAACTTAAGGTG
GCGCCTTATAGTATCAATTTTAGGAGCTTTATTTGGTGCATTTAACGCAACTGGTAATTGCAAA
ATCCACTTCGCCTGTGTAAGTGATACAGACTGTTATCGTGTTGGCCCAATGAAATTCTGCACTT
GGTATTTAGTATATACCTTCATTACTTCTGGCAAGATATTCTGCCTTAGCACTCAGTTGCATTC
TTTTTCCTTTTCTTTTCTTTCCTTTTCATTATGCTTTAATTCTGAGGACTATATGAGGGTAGAA
TACATTAAAAATTACAGAAATTTGTATAGGCAAACCATTTCCTTAAGTTGATGGCCAAATGTTA
AAATGTTATTTTTCATATCATTTATAATCTTGTCAAAAAGTCCACTTAACCAAGTTTGGTTAGA
TTTCAGTGAAAATTATCTTCCAGAGTAGGGTGTTTTTTTGTTTTTTTTCTACCCCCCCACCCCG
GGATTGGGGGGTAACTTTACTACAATTAGTATGTATGGTGCAGAATTTCATGCAAATGAGGTGT
GCCAGCAGTATGATAATTTAAACATATTTAAACAAAAAAAAAGACGAATGCACAAACTTGCTGC
TGCTTAGATCACTGCAGCTTCTAGGACCCAGTTTCTTTTAATGATTTCAAAACAAAACAAGAAA
ATAAAAAAGTTGTGCCTGAAATGAATCTTGTTTTTTTTATAGTAGCCGCCTGGTTCCTGTGTCC
TGTAAAAATACAGGCACTTGACCCTTGGTGTAGCTTATATTCAACTTTATATCACGGGAACGGA
TTGGTCTTGATTTCTTGGCCCTCATCTTGAATTGGCCATATACAGGGTCCCTGGCCAGTGGACT
AAAGGCTTTGTCTTAAGATGACAAGGGTCAGCTCAGGGGATGTGGGGGAGGGTGCTTCTGTCTT
CCCCGTTGTCGTTTGAGGTTTTGATCTTCTCTGGGTAAAGAGGCCGTTTATCTTTGTAAACATA
ACATTTTTGCTTTCTCCGGTTTTCTGTTAATGGCGAAAGAATGGAAGCGAATAAAGTTTTACTG
ATTTTTGAGACACTA

hide sequence

RefSeq Acc Id:

XM_005655415 ⟹ XP_005655472

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI

Sequence:

show sequence

TTCGTGCGCAGGCGTGTTAGGGATACGCTCCACCCCCCCTTCCTGTGCACGCGCTCGGAGCCCG
CAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCT
GGAGAGGGGGCGCTGAGCTGTTGGGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTG
CTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCTCGAAACAACCAACAAGACCAAAGAAGAGT
ACACTTAAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTT
GAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGC
CCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGATAGATCATTTTCTCTCGCTCTTTTTTTT
TTTTTTTTTTTTTTTTTAATACTAGCAACTTTCATCCTTTGAAACGTGTGCTGAAGAAGAAGAA
TCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGCTGTTTGAGATGGAGAACG
TTTTTACTGTGTCATCAGATCCTCATCCCCCTCCTGCAACCCCTCCTTCACTTTCTTTACCTTT
ATCTTCATCTTCTACCTCATCTGGAACTAAAAAACAAAAGAGGACCCCCACCTATCAGAGATCT
ATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAG
CAGCACTGCGTGAAACTGGGGTTATTGAAAAACTGCTAACCTCTTATGGATTTATTCAGTGTTC
AGAACGTCAAGCTAGACTTTTCTTCCACTGTTCGCAGTATAATGGCAACCTGCAGGACTTAAAA
GTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGTAGGACTGGGAAACCCATTGCTGTTA
AACTGGTGAAGATAAAGCAGGAAATCCTCCCTGAAGAACGAATTAATGGACAAGAAGTGTTTTA
TCTGACTTACACCCCTGAAGATGTCGAAGGGAATGTTCAGCTGGAAACTGGAGATAAGATAAAC
TTTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAATATTATGCTGTTGAAAA
AGAAACAAGCCCGTTGTCAGGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCTTTATTGAAAG
AGGTGATGTTGTAAAGGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTA
CAACCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATG
TCAGACTCTTGCCTCAAGGAACAGTCATTTTTGAAGATATTAGCATTGAACATTTTGAAGGAAC
TGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCATTGCCAGGACGCATC
AAAGTTGATTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGATACAAAATCCAAGGTGA
CCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGTCGTGACAAATTAGAACG
AGCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAAATGGGT
GTAATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGT
TCTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAGTAGAGTTTAC
TGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAGCTTCCCAAG
GGCACGGTTTCATTCCACTCTCATTCAGATCATCGTTTTCTGGGCACTGTAGAAAAAGAAGCCA
CTTTTTCCAATCCTAAAACCACTAGCCCAAATAAAGGCAAAGAAAAGGAAGCCGAGGATGGTGT
AATTGCTTATGATGATTGTGGGGTGAAGTTGACTATTGCTTTTCAAGCCAAGGATGTGGAAGGA
TCTACTTCTCCTCAAATAGGAGACAAGGTTGAATTCAGTATTAGTGACAAACAGAGGCCTGGAC
AGCAGATTGCAACTTGTGTACGACTCTTAGGTCGTAATTCCAACTCCAAGAGGCTCTTGGGTTA
TGTGGCAACTCTGAAGGATAATTTTGGATTTATTGAAACAGCCAATCATGATAAGGAAATCTTT
TTCCATTACAGTGAGTTCTCTGGTGATGTCGATAGCCTGGAACTGGGGGACATGGTTGAATACA
GCTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAGCAAAACACACTCAGTGAA
TGGCATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTCATTCGCCCCTTGAGGAGT
GTTGATCCAACGCAGACTGAGTACCAAGGAATGATTGAGATTGTGGAGGAAGGGGATATGAAGG
GTGAGGTCTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGA
GAGTGTCAAGTTCCAATTGTGTGTCTTGGGCCAAAATGCACAGACTATGGCCTACAACATCACA
CCCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGATCAGTTTGGCTTCATTAACTATGAAGTAG
GAGATAGCAAGAAGCTTTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCTGCAGGCAGG
AGATGAAGTGGAATTCTCAGTGATTCTTAATCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTT
TGGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGCTCCACGACCTGATAGGCTGGTCAATCGTT
TGAAGAACATCACCCTGGATGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGG
ACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAA
CCACATCCACAAAGCACATCATTAATCCACTATGATCAAGTTGGGGGGATTCTGGTGAAGGGTT
CTGAATATCTCCCTTTTCATCCCTCCCAAAATCTGGAATACTTATTATATTGAGCTATTACACC
AGTTTTAACACCTTCCTCGTGTTATGTTTAAAAAAATAAATAAATTTAAGAAAACCATTTTAAA
ATTATGCACAGTTGCAGCCTGGAAAACTTAAGGTGGCGCCTTATAGTATCAATTTTAGGAGCTT
TATTTGGTGCATTTAACGCAACTGGTAATTGCAAAATCCACTTCGCCTGTGTAAGTGATACAGA
CTGTTATCGTGTTGGCCCAATGAAATTCTGCACTTGGTATTTAGTATATACCTTCATTACTTCT
GGCAAGATATTCTGCCTTAGCACTCAGTTGCATTCTTTTTCCTTTTCTTTTCTTTCCTTTTCAT
TATGCTTTAATTCTGAGGACTATATGAGGGTAGAATACATTAAAAATTACAGAAATTTGTATAG
GCAAACCATTTCCTTAAGTTGATGGCCAAATGTTAAAATGTTATTTTTCATATCATTTATAATC
TTGTCAAAAAGTCCACTTAACCAAGTTTGGTTAGATTTCAGTGAAAATTATCTTCCAGAGTAGG
GTGTTTTTTTGTTTTTTTTCTACCCCCCCACCCCGGGATTGGGGGGTAACTTTACTACAATTAG
TATGTATGGTGCAGAATTTCATGCAAATGAGGTGTGCCAGCAGTATGATAATTTAAACATATTT
AAACAAAAAAAAAGACGAATGCACAAACTTGCTGCTGCTTAGATCACTGCAGCTTCTAGGACCC
AGTTTCTTTTAATGATTTCAAAACAAAACAAGAAAATAAAAAAGTTGTGCCTGAAATGAATCTT
GTTTTTTTTATAGTAGCCGCCTGGTTCCTGTGTCCTGTAAAAATACAGGCACTTGACCCTTGGT
GTAGCTTATATTCAACTTTATATCACGGGAACGGATTGGTCTTGATTTCTTGGCCCTCATCTTG
AATTGGCCATATACAGGGTCCCTGGCCAGTGGACTAAAGGCTTTGTCTTAAGATGACAAGGGTC
AGCTCAGGGGATGTGGGGGAGGGTGCTTCTGTCTTCCCCGTTGTCGTTTGAGGTTTTGATCTTC
TCTGGGTAAAGAGGCCGTTTATCTTTGTAAACATAACATTTTTGCTTTCTCCGGTTTTCTGTTA
ATGGCGAAAGAATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTA

hide sequence

RefSeq Acc Id:

XM_005655416 ⟹ XP_005655473

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI

Sequence:

show sequence

TTCGTGCGCAGGCGTGTTAGGGATACGCTCCACCCCCCCTTCCTGTGCACGCGCTCGGAGCCCG
CAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCT
GGAGAGGGGGCGCTGAGCTGTTGGGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTG
CTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCTCGAAACAACCAACAAGACCAAAGAAGAGT
ACACTTAAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTT
GAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGC
CCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGATAGATCATTTTCTCTCGCTCTTTTTTTT
TTTTTTTTTTTTTTTTTAATACTAGCAACTTTCATCCTTTGAAACGTGTGCTGAAGAAGAAGAA
TCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGATGAGCTTTGATCCAAACC
TTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAGCAGCACTGCGTGAAACTGG
GGTTATTGAAAAACTGCTAACCTCTTATGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTT
TTCTTCCACTGTTCGCAGTATAATGGCAACCTGCAGGACTTAAAAGTAGGAGATGATGTTGAAT
TTGAAGTATCATCTGACCGTAGGACTGGGAAACCCATTGCTGTTAAACTGGTGAAGATAAAGCA
GGAAATCCTCCCTGAAGAACGAATTAATGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAG
AGTAAATCTCCAGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGG
AAGTGTTTTATCTGACTTACACCCCTGAAGATGTCGAAGGGAATGTTCAGCTGGAAACTGGAGA
TAAGATAAACTTTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAATATTATG
CTGTTGAAAAAGAAACAAGCCCGTTGTCAGGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCT
TTATTGAAAGAGGTGATGTTGTAAAGGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTT
AGAAACCTTACAACCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTT
GCAACAGATGTCAGACTCTTGCCTCAAGGAACAGTCATTTTTGAAGATATTAGCATTGAACATT
TTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCATTGCC
AGGACGCATCAAAGTTGATTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGATACAAAA
TCCAAGGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGTCGTGACA
AATTAGAACGAGCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAG
AGAAATGGGTGTAATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGAT
GCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAG
TAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAA
GCTTCCCAAGGGCACGGTTTCATTCCACTCTCATTCAGATCATCGTTTTCTGGGCACTGTAGAA
AAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCAAATAAAGGCAAAGAAAAGGAAGCCG
AGGATGGTGTAATTGCTTATGATGATTGTGGGGTGAAGTTGACTATTGCTTTTCAAGCCAAGGA
TGTGGAAGGATCTACTTCTCCTCAAATAGGAGACAAGGTTGAATTCAGTATTAGTGACAAACAG
AGGCCTGGACAGCAGATTGCAACTTGTGTACGACTCTTAGGTCGTAATTCCAACTCCAAGAGGC
TCTTGGGTTATGTGGCAACTCTGAAGGATAATTTTGGATTTATTGAAACAGCCAATCATGATAA
GGAAATCTTTTTCCATTACAGTGAGTTCTCTGGTGATGTCGATAGCCTGGAACTGGGGGACATG
GTTGAATACAGCTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAGCAAAACAC
ACTCAGTGAATGGCATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTCATTCGCCC
CTTGAGGAGTGTTGATCCAACGCAGACTGAGTACCAAGGAATGATTGAGATTGTGGAGGAAGGG
GATATGAAGGGTGAGGTCTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTAC
AGAAAGGGGAGAGTGTCAAGTTCCAATTGTGTGTCTTGGGCCAAAATGCACAGACTATGGCCTA
CAACATCACACCCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGATCAGTTTGGCTTCATTAAC
TATGAAGTAGGAGATAGCAAGAAGCTTTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGC
TGCAGGCAGGAGATGAAGTGGAATTCTCAGTGATTCTTAATCAGCGCACTGGCAAGTGCAGTGC
CTGTAATGTTTGGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGCTCCACGACCTGATAGGCTG
GTCAATCGTTTGAAGAACATCACCCTGGATGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTC
AGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGT
CATTGACTAACCACATCCACAAAGCACATCATTAATCCACTATGATCAAGTTGGGGGGATTCTG
GTGAAGGGTTCTGAATATCTCCCTTTTCATCCCTCCCAAAATCTGGAATACTTATTATATTGAG
CTATTACACCAGTTTTAACACCTTCCTCGTGTTATGTTTAAAAAAATAAATAAATTTAAGAAAA
CCATTTTAAAATTATGCACAGTTGCAGCCTGGAAAACTTAAGGTGGCGCCTTATAGTATCAATT
TTAGGAGCTTTATTTGGTGCATTTAACGCAACTGGTAATTGCAAAATCCACTTCGCCTGTGTAA
GTGATACAGACTGTTATCGTGTTGGCCCAATGAAATTCTGCACTTGGTATTTAGTATATACCTT
CATTACTTCTGGCAAGATATTCTGCCTTAGCACTCAGTTGCATTCTTTTTCCTTTTCTTTTCTT
TCCTTTTCATTATGCTTTAATTCTGAGGACTATATGAGGGTAGAATACATTAAAAATTACAGAA
ATTTGTATAGGCAAACCATTTCCTTAAGTTGATGGCCAAATGTTAAAATGTTATTTTTCATATC
ATTTATAATCTTGTCAAAAAGTCCACTTAACCAAGTTTGGTTAGATTTCAGTGAAAATTATCTT
CCAGAGTAGGGTGTTTTTTTGTTTTTTTTCTACCCCCCCACCCCGGGATTGGGGGGTAACTTTA
CTACAATTAGTATGTATGGTGCAGAATTTCATGCAAATGAGGTGTGCCAGCAGTATGATAATTT
AAACATATTTAAACAAAAAAAAAGACGAATGCACAAACTTGCTGCTGCTTAGATCACTGCAGCT
TCTAGGACCCAGTTTCTTTTAATGATTTCAAAACAAAACAAGAAAATAAAAAAGTTGTGCCTGA
AATGAATCTTGTTTTTTTTATAGTAGCCGCCTGGTTCCTGTGTCCTGTAAAAATACAGGCACTT
GACCCTTGGTGTAGCTTATATTCAACTTTATATCACGGGAACGGATTGGTCTTGATTTCTTGGC
CCTCATCTTGAATTGGCCATATACAGGGTCCCTGGCCAGTGGACTAAAGGCTTTGTCTTAAGAT
GACAAGGGTCAGCTCAGGGGATGTGGGGGAGGGTGCTTCTGTCTTCCCCGTTGTCGTTTGAGGT
TTTGATCTTCTCTGGGTAAAGAGGCCGTTTATCTTTGTAAACATAACATTTTTGCTTTCTCCGG
TTTTCTGTTAATGGCGAAAGAATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTA

hide sequence

RefSeq Acc Id:

XM_005655417 ⟹ XP_005655474

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,804,512 - 105,845,735 (+)	NCBI

Sequence:

show sequence

TTCGTGCGCAGGCGTGTTAGGGATACGCTCCACCCCCCCTTCCTGTGCACGCGCTCGGAGCCCG
CAACTCTCGCGAGAGAAGCGAGATTTATTCCTACGTACCGGGCCGTGCTGCTTATGGCGGCGCT
GGAGAGGGGGCGCTGAGCTGTTGGGTATGAAGTGTAACAGAACAGACTTTACCACCTGAAACTG
CTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCTCGAAACAACCAACAAGACCAAAGAAGAGT
ACACTTAAGTTGAAGACACAACACTTGATCTGAAACAAGAAGTTTGTGCCTACTCAACAGCTTT
GAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGC
CCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTGATAGATCATTTTCTCTCGCTCTTTTTTTT
TTTTTTTTTTTTTTTTTAATACTAGCAACTTTCATCCTTTGAAACGTGTGCTGAAGAAGAAGAA
TCAGCAAATACTACTGAAAGTGCAATATTTGATTATCACTGCGAGATGAGCTTTGATCCAAACC
TTCTCCACAACAATGGACATAATGGGTACCCCAATGGTACTTCAGCAGCACTGCGTGAAACTGG
GGTTATTGAAAAACTGCTAACCTCTTATGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTT
TTCTTCCACTGTTCGCAGTATAATGGCAACCTGCAGGACTTAAAAGTAGGAGATGATGTTGAAT
TTGAAGTATCATCTGACCGTAGGACTGGGAAACCCATTGCTGTTAAACTGGTGAAGATAAAGCA
GGAAATCCTCCCTGAAGAACGAATTAATGGACAAGAAGTGTTTTATCTGACTTACACCCCTGAA
GATGTCGAAGGGAATGTTCAGCTGGAAACTGGAGATAAGATAAACTTTGTAATTGATAACAATA
AACATACTGGTGCTGTAAGTGCTCGTAATATTATGCTGTTGAAAAAGAAACAAGCCCGTTGTCA
GGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCTTTATTGAAAGAGGTGATGTTGTAAAGGAG
ATATTCTTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTACAACCTGGAGATGACGTGG
AATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATGTCAGACTCTTGCCTCAAGG
AACAGTCATTTTTGAAGATATTAGCATTGAACATTTTGAAGGAACTGTAACCAAAGTTATCCCA
AAAGTACCCAGTAAAAACCAGAATGACCCATTGCCAGGACGCATCAAAGTTGATTTTGTGATTC
CTAAAGAACTTCCCTTTGGAGACAAAGATACAAAATCCAAGGTGACCCTGCTGGAAGGTGACCA
TGTTAGGTTTAATATTTCAACAGACCGTCGTGACAAATTAGAACGAGCAACCAACATAGAAGTT
CTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAAATGGGTGTAATTGCTGCCATGAGAG
ATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTTCTTCCACTTCAGTGAAAT
TCTGGATGGGAACCAGCTCCATATTGCAGATGAAGTAGAGTTTACTGTGGTTCCTGATATGCTC
TCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAGCTTCCCAAGGGCACGGTTTCATTCCACT
CTCATTCAGATCATCGTTTTCTGGGCACTGTAGAAAAAGAAGCCACTTTTTCCAATCCTAAAAC
CACTAGCCCAAATAAAGGCAAAGAAAAGGAAGCCGAGGATGGTGTAATTGCTTATGATGATTGT
GGGGTGAAGTTGACTATTGCTTTTCAAGCCAAGGATGTGGAAGGATCTACTTCTCCTCAAATAG
GAGACAAGGTTGAATTCAGTATTAGTGACAAACAGAGGCCTGGACAGCAGATTGCAACTTGTGT
ACGACTCTTAGGTCGTAATTCCAACTCCAAGAGGCTCTTGGGTTATGTGGCAACTCTGAAGGAT
AATTTTGGATTTATTGAAACAGCCAATCATGATAAGGAAATCTTTTTCCATTACAGTGAGTTCT
CTGGTGATGTCGATAGCCTGGAACTGGGGGACATGGTTGAATACAGCTTGTCCAAAGGCAAAGG
CAACAAAGTCAGTGCAGAAAAAGTGAGCAAAACACACTCAGTGAATGGCATTACTGAGGAAGCT
GATCCCACCATCTACTCTGGTAAAGTCATTCGCCCCTTGAGGAGTGTTGATCCAACGCAGACTG
AGTACCAAGGAATGATTGAGATTGTGGAGGAAGGGGATATGAAGGGTGAGGTCTATCCATTTGG
CATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAGAGTGTCAAGTTCCAATTG
TGTGTCTTGGGCCAAAATGCACAGACTATGGCCTACAACATCACACCCCTGCGTAGGGCCACAG
TGGAGTGTGTGAAAGATCAGTTTGGCTTCATTAACTATGAAGTAGGAGATAGCAAGAAGCTTTT
TTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCTGCAGGCAGGAGATGAAGTGGAATTCTCA
GTGATTCTTAATCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTTTGGCGAGTCTGCGAGGGCC
CCAAGGCTGTTGCAGCTCCACGACCTGATAGGCTGGTCAATCGTTTGAAGAACATCACCCTGGA
TGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGGACCAGATAACTCAATGGGA
TTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAACCACATCCACAAAGCACAT
CATTAATCCACTATGATCAAGTTGGGGGGATTCTGGTGAAGGGTTCTGAATATCTCCCTTTTCA
TCCCTCCCAAAATCTGGAATACTTATTATATTGAGCTATTACACCAGTTTTAACACCTTCCTCG
TGTTATGTTTAAAAAAATAAATAAATTTAAGAAAACCATTTTAAAATTATGCACAGTTGCAGCC
TGGAAAACTTAAGGTGGCGCCTTATAGTATCAATTTTAGGAGCTTTATTTGGTGCATTTAACGC
AACTGGTAATTGCAAAATCCACTTCGCCTGTGTAAGTGATACAGACTGTTATCGTGTTGGCCCA
ATGAAATTCTGCACTTGGTATTTAGTATATACCTTCATTACTTCTGGCAAGATATTCTGCCTTA
GCACTCAGTTGCATTCTTTTTCCTTTTCTTTTCTTTCCTTTTCATTATGCTTTAATTCTGAGGA
CTATATGAGGGTAGAATACATTAAAAATTACAGAAATTTGTATAGGCAAACCATTTCCTTAAGT
TGATGGCCAAATGTTAAAATGTTATTTTTCATATCATTTATAATCTTGTCAAAAAGTCCACTTA
ACCAAGTTTGGTTAGATTTCAGTGAAAATTATCTTCCAGAGTAGGGTGTTTTTTTGTTTTTTTT
CTACCCCCCCACCCCGGGATTGGGGGGTAACTTTACTACAATTAGTATGTATGGTGCAGAATTT
CATGCAAATGAGGTGTGCCAGCAGTATGATAATTTAAACATATTTAAACAAAAAAAAAGACGAA
TGCACAAACTTGCTGCTGCTTAGATCACTGCAGCTTCTAGGACCCAGTTTCTTTTAATGATTTC
AAAACAAAACAAGAAAATAAAAAAGTTGTGCCTGAAATGAATCTTGTTTTTTTTATAGTAGCCG
CCTGGTTCCTGTGTCCTGTAAAAATACAGGCACTTGACCCTTGGTGTAGCTTATATTCAACTTT
ATATCACGGGAACGGATTGGTCTTGATTTCTTGGCCCTCATCTTGAATTGGCCATATACAGGGT
CCCTGGCCAGTGGACTAAAGGCTTTGTCTTAAGATGACAAGGGTCAGCTCAGGGGATGTGGGGG
AGGGTGCTTCTGTCTTCCCCGTTGTCGTTTGAGGTTTTGATCTTCTCTGGGTAAAGAGGCCGTT
TATCTTTGTAAACATAACATTTTTGCTTTCTCCGGTTTTCTGTTAATGGCGAAAGAATGGAAGC
GAATAAAGTTTTACTGATTTTTGAGACACTA

hide sequence

RefSeq Acc Id:

XM_021090004 ⟹ XP_020945663

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,805,870 - 105,845,735 (+)	NCBI

Sequence:

show sequence

AGGGATGGAGAACGCCCAAAGGCACTGTGATAGTTAAATATTTAAATCTGAAGGACTTAGCTTT
TTACCAGAATGGTTCGAACTGGCAGCTAGCTCTTGGCCAGAGCTTCAAATCAATAAAATTATGA
AGTGTAACAGAACAGACTTTACCACCTGAAACTGCTGCTTCAAGTTCAGATCAGGCAAGGAACA
AACCTCGAAACAACCAACAAGACCAAAGAAGAGTACACTTAAGTTGAAGACACAACACTTGATC
TGAAACAAGAAGTTTGTGCCTACTCAACAGCTTTGAAAGAGCACTTCCCAACGCTGCTAGTAGT
CTTTGTTTTCTTCAGTGCTGTACTGTGAGATTGCCCGGTGCAGCAGCAGTTGTATTCTTTATTA
GCTTGATAGATCATTTTCTCTCGCTCTTTTTTTTTTTTTTTTTTTTTTTTTAATACTAGCAACT
TTCATCCTTTGAAACGTGTGCTGAAGAAGAAGAATCAGCAAATACTACTGAAAGTGCAATATTT
GATTATCACTGCGAGCTGTTTGAGATGGAGAACGTTTTTACTGTGTCATCAGATCCTCATCCCC
CTCCTGCAACCCCTCCTTCACTTTCTTTACCTTTATCTTCATCTTCTACCTCATCTGGAACTAA
AAAACAAAAGAGGACCCCCACCTATCAGAGATCTATGAGCTTTGATCCAAACCTTCTCCACAAC
AATGGACATAATGGGTACCCCAATGGTACTTCAGCAGCACTGCGTGAAACTGGGGTTATTGAAA
AACTGCTAACCTCTTATGGATTTATTCAGTGTTCAGAACGTCAAGCTAGACTTTTCTTCCACTG
TTCGCAGTATAATGGCAACCTGCAGGACTTAAAAGTAGGAGATGATGTTGAATTTGAAGTATCA
TCTGACCGTAGGACTGGGAAACCCATTGCTGTTAAACTGGTGAAGATAAAGCAGGAAATCCTCC
CTGAAGAACGAATTAATGGACAAGTTGTGTGCGCTGTTCCTCACAACTTAGAGAGTAAATCTCC
AGCTGCCCCGGGTCAGAGTCCAACAGGGAGTGTATGCTACGAACGTAATGGGGAAGTGTTTTAT
CTGACTTACACCCCTGAAGATGTCGAAGGGAATGTTCAGCTGGAAACTGGAGATAAGATAAACT
TTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAATATTATGCTGTTGAAAAA
GAAACAAGCCCGTTGTCAGGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCTTTATTGAAAGA
GGTGATGTTGTAAAGGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTTAGAAACCTTAC
AACCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTTGCAACAGATGT
CAGACTCTTGCCTCAAGGAACAGTCATTTTTGAAGATATTAGCATTGAACATTTTGAAGGAACT
GTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCATTGCCAGGACGCATCA
AAGTTGATTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGATACAAAATCCAAGGTGAC
CCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGTCGTGACAAATTAGAACGA
GCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAGAGAAATGGGTG
TAATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGATGCTCGTATGTT
CTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAGTAGAGTTTACT
GTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAAGCTTCCCAAGG
GCACGGTTTCATTCCACTCTCATTCAGATCATCGTTTTCTGGGCACTGTAGAAAAAGAAGCCAC
TTTTTCCAATCCTAAAACCACTAGCCCAAATAAAGGCAAAGAAAAGGAAGCCGAGGATGGTGTA
ATTGCTTATGATGATTGTGGGGTGAAGTTGACTATTGCTTTTCAAGCCAAGGATGTGGAAGGAT
CTACTTCTCCTCAAATAGGAGACAAGGTTGAATTCAGTATTAGTGACAAACAGAGGCCTGGACA
GCAGATTGCAACTTGTGTACGACTCTTAGGTCGTAATTCCAACTCCAAGAGGCTCTTGGGTTAT
GTGGCAACTCTGAAGGATAATTTTGGATTTATTGAAACAGCCAATCATGATAAGGAAATCTTTT
TCCATTACAGTGAGTTCTCTGGTGATGTCGATAGCCTGGAACTGGGGGACATGGTTGAATACAG
CTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAGCAAAACACACTCAGTGAAT
GGCATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTCATTCGCCCCTTGAGGAGTG
TTGATCCAACGCAGACTGAGTACCAAGGAATGATTGAGATTGTGGAGGAAGGGGATATGAAGGG
TGAGGTCTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTACAGAAAGGGGAG
AGTGTCAAGTTCCAATTGTGTGTCTTGGGCCAAAATGCACAGACTATGGCCTACAACATCACAC
CCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGATCAGTTTGGCTTCATTAACTATGAAGTAGG
AGATAGCAAGAAGCTTTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGCTGCAGGCAGGA
GATGAAGTGGAATTCTCAGTGATTCTTAATCAGCGCACTGGCAAGTGCAGTGCCTGTAATGTTT
GGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGCTCCACGACCTGATAGGCTGGTCAATCGTTT
GAAGAACATCACCCTGGATGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTCAGCCAAGGGGA
CCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGTCATTGACTAAC
CACATCCACAAAGCACATCATTAATCCACTATGATCAAGTTGGGGGGATTCTGGTGAAGGGTTC
TGAATATCTCCCTTTTCATCCCTCCCAAAATCTGGAATACTTATTATATTGAGCTATTACACCA
GTTTTAACACCTTCCTCGTGTTATGTTTAAAAAAATAAATAAATTTAAGAAAACCATTTTAAAA
TTATGCACAGTTGCAGCCTGGAAAACTTAAGGTGGCGCCTTATAGTATCAATTTTAGGAGCTTT
ATTTGGTGCATTTAACGCAACTGGTAATTGCAAAATCCACTTCGCCTGTGTAAGTGATACAGAC
TGTTATCGTGTTGGCCCAATGAAATTCTGCACTTGGTATTTAGTATATACCTTCATTACTTCTG
GCAAGATATTCTGCCTTAGCACTCAGTTGCATTCTTTTTCCTTTTCTTTTCTTTCCTTTTCATT
ATGCTTTAATTCTGAGGACTATATGAGGGTAGAATACATTAAAAATTACAGAAATTTGTATAGG
CAAACCATTTCCTTAAGTTGATGGCCAAATGTTAAAATGTTATTTTTCATATCATTTATAATCT
TGTCAAAAAGTCCACTTAACCAAGTTTGGTTAGATTTCAGTGAAAATTATCTTCCAGAGTAGGG
TGTTTTTTTGTTTTTTTTCTACCCCCCCACCCCGGGATTGGGGGGTAACTTTACTACAATTAGT
ATGTATGGTGCAGAATTTCATGCAAATGAGGTGTGCCAGCAGTATGATAATTTAAACATATTTA
AACAAAAAAAAAGACGAATGCACAAACTTGCTGCTGCTTAGATCACTGCAGCTTCTAGGACCCA
GTTTCTTTTAATGATTTCAAAACAAAACAAGAAAATAAAAAAGTTGTGCCTGAAATGAATCTTG
TTTTTTTTATAGTAGCCGCCTGGTTCCTGTGTCCTGTAAAAATACAGGCACTTGACCCTTGGTG
TAGCTTATATTCAACTTTATATCACGGGAACGGATTGGTCTTGATTTCTTGGCCCTCATCTTGA
ATTGGCCATATACAGGGTCCCTGGCCAGTGGACTAAAGGCTTTGTCTTAAGATGACAAGGGTCA
GCTCAGGGGATGTGGGGGAGGGTGCTTCTGTCTTCCCCGTTGTCGTTTGAGGTTTTGATCTTCT
CTGGGTAAAGAGGCCGTTTATCTTTGTAAACATAACATTTTTGCTTTCTCCGGTTTTCTGTTAA
TGGCGAAAGAATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTA

hide sequence

RefSeq Acc Id:

XM_021090005 ⟹ XP_020945664

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	4	105,805,107 - 105,845,735 (+)	NCBI

Sequence:

show sequence

TTTGTGTGATGCTGGAAGAGCCGGAGGCTGAGGAGAGGGGCCTGCTCTGACTCTGGACCCCATA
GTTTCTTGCCACCTTCTGGCTTGGGCATCTGACTACGAGTACCAGAGCGCATTGCGGTAGTGGC
GCCTCCTTTGTGTACGGACTGAGACCTCACTCCACCTAAGTGCTTAGAGACACCCCCTTTCCTC
GGCCACATCTGGCACTGTAGCGCGGCCAAATTGTCGTCCTTCTTTCCATTCACCTAGAGCTGTC
TGTCTTGGGTCTCAACACCCACCTAAGCCTCCCTTAGGTTCTTAAGAAAAGGAACCAACCCCTT
AGGCACATGGCTCTCACCCCCTGTCCTTGGGGTTGGGGCGAACTCTGTGAGAGGTCAATGGAGT
TCTTACCACCTTCTCTTGTTCTTATGGTGCAGGAGCCTGGCCCACATTGTGCAAAGATCGGCTT
GGCTTCATCATTCTAAGTAGAGTTAGTTTTTTCTAGAGCCCTGGTCAGAGACACTTTGGAGGTT
TTTAACCCCCGATGTTTCATCAGTCCGAAATCTTAGTGCCACGGGTGTTTTTGCTTTAAGGTTT
TCCTTTAGAAACATTCAGATGGCTCCTCTCTTGCTTGACTCTCAAGTGAGGCAGGGTATGCTCT
CTAAAACAGATCTCAGACTGCAAATAAAAAATCTGAACATTGTGCGATTGATTTCCTTGTTTTG
CACCTAAAAGAGCAGAATAATGTGGTCCTCTTTTTAAACAGTTGAGGGACAGCGTGGAGAGGGA
TGGAGAACGCCCAAAGGCACTGTGATAGTTAAATATTTAAATCTGAAGGACTTAGCTTTTTACC
AGAATGGTTCGAACTGGCAGCTAGCTCTTGGCCAGAGCTTCAAATCAATAAAATTATGAAGTGT
AACAGAACAGACTTTACCACCTGAAACTGCTGCTTCAAGTTCAGATCAGGCAAGGAACAAACCT
CGAAACAACCAACAAGACCAAAGAAGAGTACACTTAAGTTGAAGACACAACACTTGATCTGAAA
CAAGAAGTTTGTGCCTACTCAACAGCTTTGAAAGAGCACTTCCCAACGCTGCTAGTAGTCTTTG
TTTTCTTCAGTGCTGTACTGTGAGATTGCCCGGTGCAGCAGCAGTTGTATTCTTTATTAGCTTG
ATAGATCATTTTCTCTCGCTCTTTTTTTTTTTTTTTTTTTTTTTTTAATACTAGCAACTTTCAT
CCTTTGAAACGTGTGCTGAAGAAGAAGAATCAGCAAATACTACTGAAAGTGCAATATTTGATTA
TCACTGCGAGATGAGCTTTGATCCAAACCTTCTCCACAACAATGGACATAATGGGTACCCCAAT
GGTACTTCAGCAGCACTGCGTGAAACTGGGGTTATTGAAAAACTGCTAACCTCTTATGGATTTA
TTCAGTGTTCAGAACGTCAAGCTAGACTTTTCTTCCACTGTTCGCAGTATAATGGCAACCTGCA
GGACTTAAAAGTAGGAGATGATGTTGAATTTGAAGTATCATCTGACCGTAGGACTGGGAAACCC
ATTGCTGTTAAACTGGTGAAGATAAAGCAGGAAATCCTCCCTGAAGAACGAATTAATGGACAAG
AAGTGTTTTATCTGACTTACACCCCTGAAGATGTCGAAGGGAATGTTCAGCTGGAAACTGGAGA
TAAGATAAACTTTGTAATTGATAACAATAAACATACTGGTGCTGTAAGTGCTCGTAATATTATG
CTGTTGAAAAAGAAACAAGCCCGTTGTCAGGGAGTAGTTTGTGCCATGAAGGAGGCGTTTGGCT
TTATTGAAAGAGGTGATGTTGTAAAGGAGATATTCTTTCACTATAGTGAATTTAAGGGTGACTT
AGAAACCTTACAACCTGGAGATGACGTGGAATTCACAATCAAGGACAGAAATGGTAAAGAAGTT
GCAACAGATGTCAGACTCTTGCCTCAAGGAACAGTCATTTTTGAAGATATTAGCATTGAACATT
TTGAAGGAACTGTAACCAAAGTTATCCCAAAAGTACCCAGTAAAAACCAGAATGACCCATTGCC
AGGACGCATCAAAGTTGATTTTGTGATTCCTAAAGAACTTCCCTTTGGAGACAAAGATACAAAA
TCCAAGGTGACCCTGCTGGAAGGTGACCATGTTAGGTTTAATATTTCAACAGACCGTCGTGACA
AATTAGAACGAGCAACCAACATAGAAGTTCTATCAAATACATTTCAGTTCACTAATGAAGCCAG
AGAAATGGGTGTAATTGCTGCCATGAGAGATGGTTTTGGTTTCATCAAGTGTGTGGATCGTGAT
GCTCGTATGTTCTTCCACTTCAGTGAAATTCTGGATGGGAACCAGCTCCATATTGCAGATGAAG
TAGAGTTTACTGTGGTTCCTGATATGCTCTCTGCCCAAAGAAATCATGCTATTAGGATTAAAAA
GCTTCCCAAGGGCACGGTTTCATTCCACTCTCATTCAGATCATCGTTTTCTGGGCACTGTAGAA
AAAGAAGCCACTTTTTCCAATCCTAAAACCACTAGCCCAAATAAAGGCAAAGAAAAGGAAGCCG
AGGATGGTGTAATTGCTTATGATGATTGTGGGGTGAAGTTGACTATTGCTTTTCAAGCCAAGGA
TGTGGAAGGATCTACTTCTCCTCAAATAGGAGACAAGGTTGAATTCAGTATTAGTGACAAACAG
AGGCCTGGACAGCAGATTGCAACTTGTGTACGACTCTTAGGTCGTAATTCCAACTCCAAGAGGC
TCTTGGGTTATGTGGCAACTCTGAAGGATAATTTTGGATTTATTGAAACAGCCAATCATGATAA
GGAAATCTTTTTCCATTACAGTGAGTTCTCTGGTGATGTCGATAGCCTGGAACTGGGGGACATG
GTTGAATACAGCTTGTCCAAAGGCAAAGGCAACAAAGTCAGTGCAGAAAAAGTGAGCAAAACAC
ACTCAGTGAATGGCATTACTGAGGAAGCTGATCCCACCATCTACTCTGGTAAAGTCATTCGCCC
CTTGAGGAGTGTTGATCCAACGCAGACTGAGTACCAAGGAATGATTGAGATTGTGGAGGAAGGG
GATATGAAGGGTGAGGTCTATCCATTTGGCATAGTTGGGATGGCCAACAAAGGGGATTGCCTAC
AGAAAGGGGAGAGTGTCAAGTTCCAATTGTGTGTCTTGGGCCAAAATGCACAGACTATGGCCTA
CAACATCACACCCCTGCGTAGGGCCACAGTGGAGTGTGTGAAAGATCAGTTTGGCTTCATTAAC
TATGAAGTAGGAGATAGCAAGAAGCTTTTTTTCCATGTGAAAGAAGTTCAGGATGGCATTGAGC
TGCAGGCAGGAGATGAAGTGGAATTCTCAGTGATTCTTAATCAGCGCACTGGCAAGTGCAGTGC
CTGTAATGTTTGGCGAGTCTGCGAGGGCCCCAAGGCTGTTGCAGCTCCACGACCTGATAGGCTG
GTCAATCGTTTGAAGAACATCACCCTGGATGATGCCAGTGCTCCTCGCCTAATGGTTCTTCGTC
AGCCAAGGGGACCAGATAACTCAATGGGATTTGGTGCAGAAAGAAAGATCCGTCAAGCTGGTGT
CATTGACTAACCACATCCACAAAGCACATCATTAATCCACTATGATCAAGTTGGGGGGATTCTG
GTGAAGGGTTCTGAATATCTCCCTTTTCATCCCTCCCAAAATCTGGAATACTTATTATATTGAG
CTATTACACCAGTTTTAACACCTTCCTCGTGTTATGTTTAAAAAAATAAATAAATTTAAGAAAA
CCATTTTAAAATTATGCACAGTTGCAGCCTGGAAAACTTAAGGTGGCGCCTTATAGTATCAATT
TTAGGAGCTTTATTTGGTGCATTTAACGCAACTGGTAATTGCAAAATCCACTTCGCCTGTGTAA
GTGATACAGACTGTTATCGTGTTGGCCCAATGAAATTCTGCACTTGGTATTTAGTATATACCTT
CATTACTTCTGGCAAGATATTCTGCCTTAGCACTCAGTTGCATTCTTTTTCCTTTTCTTTTCTT
TCCTTTTCATTATGCTTTAATTCTGAGGACTATATGAGGGTAGAATACATTAAAAATTACAGAA
ATTTGTATAGGCAAACCATTTCCTTAAGTTGATGGCCAAATGTTAAAATGTTATTTTTCATATC
ATTTATAATCTTGTCAAAAAGTCCACTTAACCAAGTTTGGTTAGATTTCAGTGAAAATTATCTT
CCAGAGTAGGGTGTTTTTTTGTTTTTTTTCTACCCCCCCACCCCGGGATTGGGGGGTAACTTTA
CTACAATTAGTATGTATGGTGCAGAATTTCATGCAAATGAGGTGTGCCAGCAGTATGATAATTT
AAACATATTTAAACAAAAAAAAAGACGAATGCACAAACTTGCTGCTGCTTAGATCACTGCAGCT
TCTAGGACCCAGTTTCTTTTAATGATTTCAAAACAAAACAAGAAAATAAAAAAGTTGTGCCTGA
AATGAATCTTGTTTTTTTTATAGTAGCCGCCTGGTTCCTGTGTCCTGTAAAAATACAGGCACTT
GACCCTTGGTGTAGCTTATATTCAACTTTATATCACGGGAACGGATTGGTCTTGATTTCTTGGC
CCTCATCTTGAATTGGCCATATACAGGGTCCCTGGCCAGTGGACTAAAGGCTTTGTCTTAAGAT
GACAAGGGTCAGCTCAGGGGATGTGGGGGAGGGTGCTTCTGTCTTCCCCGTTGTCGTTTGAGGT
TTTGATCTTCTCTGGGTAAAGAGGCCGTTTATCTTTGTAAACATAACATTTTTGCTTTCTCCGG
TTTTCTGTTAATGGCGAAAGAATGGAAGCGAATAAAGTTTTACTGATTTTTGAGACACTA

hide sequence

Protein Sequences


Protein RefSeqs	XP_003481532	(Get FASTA)	NCBI Sequence Viewer
	XP_005655472	(Get FASTA)	NCBI Sequence Viewer
	XP_005655473	(Get FASTA)	NCBI Sequence Viewer
	XP_005655474	(Get FASTA)	NCBI Sequence Viewer
	XP_020945663	(Get FASTA)	NCBI Sequence Viewer
	XP_020945664	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000050736
	ENSSSCP00000050736.1
	ENSSSCP00000053136
	ENSSSCP00000053136.2
	ENSSSCP00000057604
	ENSSSCP00000057604.3
	ENSSSCP00015035475.1
	ENSSSCP00015035539.1
	ENSSSCP00015035748.1
	ENSSSCP00015035871.1
	ENSSSCP00025008834.1
	ENSSSCP00025008883.1
	ENSSSCP00025008918.1
	ENSSSCP00025008965.1
	ENSSSCP00030032419.1
	ENSSSCP00030032425.1
	ENSSSCP00030032555.1
	ENSSSCP00030032601.1
	ENSSSCP00035021605.1
	ENSSSCP00035021610.1
	ENSSSCP00035021615.1
	ENSSSCP00035021621.1
	ENSSSCP00040011982.1
	ENSSSCP00040012044.1
	ENSSSCP00040012078.1
	ENSSSCP00040012109.1
	ENSSSCP00045011293.1
	ENSSSCP00045011341.1
	ENSSSCP00045011424.1
	ENSSSCP00045011519.1
	ENSSSCP00050024116.1
	ENSSSCP00050024127.1
	ENSSSCP00050024138.1
	ENSSSCP00050024146.1
	ENSSSCP00055019631.1
	ENSSSCP00055019806.1
	ENSSSCP00055019966.1
	ENSSSCP00055020113.1
	ENSSSCP00060042472.1
	ENSSSCP00060042611.1
	ENSSSCP00060042652.1
	ENSSSCP00060042723.1
	ENSSSCP00065016999.1
	ENSSSCP00065017004.1
	ENSSSCP00065017007.1
	ENSSSCP00065017014.1
	ENSSSCP00065017021.1
	ENSSSCP00070007486.1
	ENSSSCP00070007495.1
	ENSSSCP00070007511.1
	ENSSSCP00070007516.1

RefSeq Acc Id:	XP_003481532 ⟸ XM_003481484
- Peptide Label:	isoform X1
- UniProtKB:	A0A287B2T9 (UniProtKB/TrEMBL), A0A4X1SYQ9 (UniProtKB/TrEMBL), A0A8D1QD54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENVFTVSSDPHPPPATPPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPN GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKP IAVKLVKIKQEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDV EGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKV PSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLS NTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSA QRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGVIAYDDCGV KLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNF GFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVSKTHSVNGITEEADP TIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCV LGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVI LNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFG AERKIRQAGVID hide sequence

RefSeq Acc Id:	XP_005655472 ⟸ XM_005655415
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1U1C4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENVFTVSSDPHPPPATPPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPN GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKP IAVKLVKIKQEILPEERINGQEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIM LLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEV ATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTK SKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRD ARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVE KEATFSNPKTTSPNKGKEKEAEDGVIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQ RPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDM VEYSLSKGKGNKVSAEKVSKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEG DMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFIN YEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRL VNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID hide sequence

RefSeq Acc Id:	XP_005655473 ⟸ XM_005655416
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D1YCF7 (UniProtKB/TrEMBL), A0A8D1H8A2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLK VGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSV CYERNGEVFYLTYTPEDVEGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCA MKEAFGFIERGDVVKEIFFHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFE DISIEHFEGTVTKVIPKVPSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNI STDRRDKLERATNIEVLSNTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQ LHIADEVEFTVVPDMLSAQRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNK GKEKEAEDGVIAYDDCGVKLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGR NSNSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSA EKVSKTHSVNGITEEADPTIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMA NKGDCLQKGESVKFQLCVLGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKE VQDGIELQAGDEVEFSVILNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAP RLMVLRQPRGPDNSMGFGAERKIRQAGVID hide sequence

RefSeq Acc Id:	XP_005655474 ⟸ XM_005655417
- Peptide Label:	isoform X4
- UniProtKB:	A0A4X1SYH9 (UniProtKB/TrEMBL), A0A8D1QNR2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLK VGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQEVFYLTYTPEDVEGNVQLETGDKIN FVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETL QPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRI KVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMG VIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPK GTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGVIAYDDCGVKLTIAFQAKDVEG STSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIF FHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVSKTHSVNGITEEADPTIYSGKVIRPLRS VDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNIT PLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNV WRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID hide sequence

RefSeq Acc Id:	XP_020945664 ⟸ XM_021090005
- Peptide Label:	isoform X4
- UniProtKB:	A0A4X1SYH9 (UniProtKB/TrEMBL), A0A8D1QNR2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSFDPNLLHNNGHNGYPNGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLK VGDDVEFEVSSDRRTGKPIAVKLVKIKQEILPEERINGQEVFYLTYTPEDVEGNVQLETGDKIN FVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGDLETL QPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKVPSKNQNDPLPGRI KVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLSNTFQFTNEAREMG VIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSAQRNHAIRIKKLPK GTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGVIAYDDCGVKLTIAFQAKDVEG STSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNFGFIETANHDKEIF FHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVSKTHSVNGITEEADPTIYSGKVIRPLRS VDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCVLGQNAQTMAYNIT PLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVILNQRTGKCSACNV WRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFGAERKIRQAGVID hide sequence

RefSeq Acc Id:	XP_020945663 ⟸ XM_021090004
- Peptide Label:	isoform X1
- UniProtKB:	A0A287B2T9 (UniProtKB/TrEMBL), A0A4X1SYQ9 (UniProtKB/TrEMBL), A0A8D1QD54 (UniProtKB/TrEMBL)
- Sequence:	show sequence MENVFTVSSDPHPPPATPPSLSLPLSSSSTSSGTKKQKRTPTYQRSMSFDPNLLHNNGHNGYPN GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGNLQDLKVGDDVEFEVSSDRRTGKP IAVKLVKIKQEILPEERINGQVVCAVPHNLESKSPAAPGQSPTGSVCYERNGEVFYLTYTPEDV EGNVQLETGDKINFVIDNNKHTGAVSARNIMLLKKKQARCQGVVCAMKEAFGFIERGDVVKEIF FHYSEFKGDLETLQPGDDVEFTIKDRNGKEVATDVRLLPQGTVIFEDISIEHFEGTVTKVIPKV PSKNQNDPLPGRIKVDFVIPKELPFGDKDTKSKVTLLEGDHVRFNISTDRRDKLERATNIEVLS NTFQFTNEAREMGVIAAMRDGFGFIKCVDRDARMFFHFSEILDGNQLHIADEVEFTVVPDMLSA QRNHAIRIKKLPKGTVSFHSHSDHRFLGTVEKEATFSNPKTTSPNKGKEKEAEDGVIAYDDCGV KLTIAFQAKDVEGSTSPQIGDKVEFSISDKQRPGQQIATCVRLLGRNSNSKRLLGYVATLKDNF GFIETANHDKEIFFHYSEFSGDVDSLELGDMVEYSLSKGKGNKVSAEKVSKTHSVNGITEEADP TIYSGKVIRPLRSVDPTQTEYQGMIEIVEEGDMKGEVYPFGIVGMANKGDCLQKGESVKFQLCV LGQNAQTMAYNITPLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQDGIELQAGDEVEFSVI LNQRTGKCSACNVWRVCEGPKAVAAPRPDRLVNRLKNITLDDASAPRLMVLRQPRGPDNSMGFG AERKIRQAGVID hide sequence

Ensembl Acc Id:

ENSSSCP00000050736 ⟸ ENSSSCT00000064093

Ensembl Acc Id:

ENSSSCP00000053136 ⟸ ENSSSCT00000048448

Ensembl Acc Id:

ENSSSCP00000057604 ⟸ ENSSSCT00000044302

Protein Domains

CSD SUZ-C

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000006752	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015065030	UniProtKB/TrEMBL
	ENSSSCG00025015812	UniProtKB/TrEMBL
	ENSSSCG00030051025	UniProtKB/TrEMBL
	ENSSSCG00035040397	UniProtKB/TrEMBL
	ENSSSCG00040020719	UniProtKB/TrEMBL
	ENSSSCG00045009633	UniProtKB/TrEMBL
	ENSSSCG00050041707	UniProtKB/TrEMBL
	ENSSSCG00055012495	UniProtKB/TrEMBL
	ENSSSCG00060071559	UniProtKB/TrEMBL
	ENSSSCG00065029820	UniProtKB/TrEMBL
	ENSSSCG00070004780	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000044302	ENTREZGENE
	ENSSSCT00000044302.3	UniProtKB/TrEMBL
	ENSSSCT00000048448	ENTREZGENE
	ENSSSCT00000048448.3	UniProtKB/TrEMBL
	ENSSSCT00000064093	ENTREZGENE
	ENSSSCT00000064093.3	UniProtKB/TrEMBL
	ENSSSCT00015087079.1	UniProtKB/TrEMBL
	ENSSSCT00015087236.1	UniProtKB/TrEMBL
	ENSSSCT00015087701.1	UniProtKB/TrEMBL
	ENSSSCT00015087963.1	UniProtKB/TrEMBL
	ENSSSCT00025021488.1	UniProtKB/TrEMBL
	ENSSSCT00025021600.1	UniProtKB/TrEMBL
	ENSSSCT00025021674.1	UniProtKB/TrEMBL
	ENSSSCT00025021770.1	UniProtKB/TrEMBL
	ENSSSCT00030071091.1	UniProtKB/TrEMBL
	ENSSSCT00030071113.1	UniProtKB/TrEMBL
	ENSSSCT00030071400.1	UniProtKB/TrEMBL
	ENSSSCT00030071509.1	UniProtKB/TrEMBL
	ENSSSCT00035053694.1	UniProtKB/TrEMBL
	ENSSSCT00035053719.1	UniProtKB/TrEMBL
	ENSSSCT00035053736.1	UniProtKB/TrEMBL
	ENSSSCT00035053748.1	UniProtKB/TrEMBL
	ENSSSCT00040028507.1	UniProtKB/TrEMBL
	ENSSSCT00040028702.1	UniProtKB/TrEMBL
	ENSSSCT00040028784.1	UniProtKB/TrEMBL
	ENSSSCT00040028869.1	UniProtKB/TrEMBL
	ENSSSCT00045016345.1	UniProtKB/TrEMBL
	ENSSSCT00045016419.1	UniProtKB/TrEMBL
	ENSSSCT00045016559.1	UniProtKB/TrEMBL
	ENSSSCT00045016701.1	UniProtKB/TrEMBL
	ENSSSCT00050056618.1	UniProtKB/TrEMBL
	ENSSSCT00050056634.1	UniProtKB/TrEMBL
	ENSSSCT00050056646.1	UniProtKB/TrEMBL
	ENSSSCT00050056661.1	UniProtKB/TrEMBL
	ENSSSCT00055024731.1	UniProtKB/TrEMBL
	ENSSSCT00055024949.1	UniProtKB/TrEMBL
	ENSSSCT00055025129.1	UniProtKB/TrEMBL
	ENSSSCT00055025317.1	UniProtKB/TrEMBL
	ENSSSCT00060097979.1	UniProtKB/TrEMBL
	ENSSSCT00060098299.1	UniProtKB/TrEMBL
	ENSSSCT00060098368.1	UniProtKB/TrEMBL
	ENSSSCT00060098500.1	UniProtKB/TrEMBL
	ENSSSCT00065040225.1	UniProtKB/TrEMBL
	ENSSSCT00065040234.1	UniProtKB/TrEMBL
	ENSSSCT00065040241.1	UniProtKB/TrEMBL
	ENSSSCT00065040254.1	UniProtKB/TrEMBL
	ENSSSCT00065040271.1	UniProtKB/TrEMBL
	ENSSSCT00070009123.1	UniProtKB/TrEMBL
	ENSSSCT00070009136.1	UniProtKB/TrEMBL
	ENSSSCT00070009156.1	UniProtKB/TrEMBL
	ENSSSCT00070009164.1	UniProtKB/TrEMBL
Gene3D-CATH	2.40.50.140	UniProtKB/TrEMBL
InterPro	Cold-shock_CS	UniProtKB/TrEMBL
	CSD	UniProtKB/TrEMBL
	CSP_DNA-bd	UniProtKB/TrEMBL
	NA-bd_OB-fold	UniProtKB/TrEMBL
	SUZ-C	UniProtKB/TrEMBL
KEGG Report	ssc:100739316	UniProtKB/TrEMBL
NCBI Gene	CSDE1	ENTREZGENE
PANTHER	COLD SHOCK DOMAIN-CONTAINING PROTEIN E1	UniProtKB/TrEMBL
	UNR PROTEIN N-RAS UPSTREAM GENE PROTEIN	UniProtKB/TrEMBL
Pfam	CSD	UniProtKB/TrEMBL
	SUZ-C	UniProtKB/TrEMBL
PROSITE	COLD_SHOCK	UniProtKB/TrEMBL
	CSD_2	UniProtKB/TrEMBL
	SUZ_C	UniProtKB/TrEMBL
SMART	CSP	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50249	UniProtKB/TrEMBL
UniProt	A0A287B2T9	ENTREZGENE, UniProtKB/TrEMBL
	A0A287B9X6_PIG	UniProtKB/TrEMBL
	A0A287BM79_PIG	UniProtKB/TrEMBL
	A0A4X1SYB4_PIG	UniProtKB/TrEMBL
	A0A4X1SYH9	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1SYQ9	ENTREZGENE
	A0A8D0IKZ0_PIG	UniProtKB/TrEMBL
	A0A8D0PLX0_PIG	UniProtKB/TrEMBL
	A0A8D0U9K3_PIG	UniProtKB/TrEMBL
	A0A8D1H8A2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1MGY3_PIG	UniProtKB/TrEMBL
	A0A8D1QD54	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1QNR2	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1U1C4	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1YCF7	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:87029	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - ClinVar