INTS15 (integrator complex subunit 15) - Rat Genome Database

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Gene: INTS15 (integrator complex subunit 15) Sus scrofa
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Symbol: INTS15
Name: integrator complex subunit 15
RGD ID: 14170583
Description: FOUND IN integrator complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: C3H7orf26; chromosome 3 C7orf26 homolog; uncharacterized protein C7orf26 homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,610,700 - 4,626,896 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,610,701 - 4,626,973 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

Genomics

Comparative Map Data
INTS15
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl34,610,700 - 4,626,896 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.134,610,701 - 4,626,973 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
INTS15
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3876,590,021 - 6,608,726 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl76,590,021 - 6,608,726 (+)EnsemblGRCh38hg38GRCh38
GRCh3776,629,652 - 6,648,357 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3676,596,440 - 6,614,880 (+)NCBINCBI36Build 36hg18NCBI36
Build 3476,403,154 - 6,421,595NCBI
Celera76,086,824 - 6,105,263 (-)NCBICelera
Cytogenetic Map7p22.1NCBI
HuRef76,502,397 - 6,520,738 (+)NCBIHuRef
CHM1_176,629,541 - 6,647,974 (+)NCBICHM1_1
T2T-CHM13v2.076,709,194 - 6,727,910 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v276,676,974 - 6,695,409 (+)NCBI
Ints15
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395143,286,827 - 143,301,147 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5143,286,950 - 143,301,115 (-)EnsemblGRCm39 Ensembl
GRCm385143,301,072 - 143,315,387 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5143,301,195 - 143,315,360 (-)EnsemblGRCm38mm10GRCm38
MGSCv375144,062,751 - 144,077,039 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv365143,566,348 - 143,580,500 (-)NCBIMGSCv36mm8
Celera5140,346,063 - 140,360,351 (-)NCBICelera
Cytogenetic Map5G2NCBI
cM Map582.07NCBI
Ints15
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81216,358,644 - 16,373,763 (+)NCBIGRCr8
mRatBN7.21211,245,045 - 11,260,170 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1211,245,842 - 11,260,166 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1212,053,126 - 12,067,490 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01212,676,410 - 12,690,774 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01211,702,786 - 11,716,927 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01213,299,651 - 13,313,733 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1213,299,859 - 13,313,358 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01215,340,436 - 15,354,557 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1213,039,384 - 13,053,326 (+)NCBICelera
Cytogenetic Map12p11NCBI
Ints15
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546013,104,112 - 13,118,530 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495546013,106,906 - 13,118,531 (-)NCBIChiLan1.0ChiLan1.0
INTS15
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2611,063,706 - 11,082,429 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1759,388,416 - 59,407,080 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v076,835,964 - 6,854,628 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.176,782,966 - 6,801,636 (+)NCBIpanpan1.1PanPan1.1panPan2
INTS15
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1611,910,812 - 11,924,915 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl611,893,081 - 11,924,929 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha613,535,776 - 13,549,851 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0611,913,000 - 11,927,095 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl611,913,048 - 11,927,091 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1611,788,667 - 11,802,741 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0611,767,733 - 11,781,834 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0611,995,119 - 12,009,213 (+)NCBIUU_Cfam_GSD_1.0
Ints15
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344140,121,571 - 140,134,654 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936765112,637 - 125,711 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936765112,637 - 125,714 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
INTS15
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12815,805,068 - 15,821,190 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666102214,405 - 237,887 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ints15
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474030,743,068 - 30,757,900 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474030,743,218 - 30,757,931 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in INTS15
434 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 1 2
Below cutoff 4 2 3 4 1 11 1 1 3

Sequence


RefSeq Acc Id: ENSSSCT00000052207   ⟹   ENSSSCP00000036647
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl34,610,700 - 4,626,896 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071066   ⟹   ENSSSCP00000062719
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl34,610,700 - 4,626,876 (-)Ensembl
RefSeq Acc Id: XM_021086073   ⟹   XP_020941732
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.134,610,702 - 4,626,973 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021086074   ⟹   XP_020941733
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.134,610,701 - 4,626,655 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020941733   ⟸   XM_021086074
- Peptide Label: isoform X2
- UniProtKB: A0A8D0MAF6 (UniProtKB/TrEMBL),   A0A8D1Z4A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941732   ⟸   XM_021086073
- Peptide Label: isoform X1
- UniProtKB: A0A4X1TUI7 (UniProtKB/TrEMBL),   A0A0B8S0B2 (UniProtKB/TrEMBL),   A0A286ZYR1 (UniProtKB/TrEMBL),   A0A8D1Z4A6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000036647   ⟸   ENSSSCT00000052207
RefSeq Acc Id: ENSSSCP00000062719   ⟸   ENSSSCT00000071066


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000036192 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015001649 UniProtKB/TrEMBL
  ENSSSCG00025031311 UniProtKB/TrEMBL
  ENSSSCG00030005250 UniProtKB/TrEMBL
  ENSSSCG00035008344 UniProtKB/TrEMBL
  ENSSSCG00040075695 UniProtKB/TrEMBL
  ENSSSCG00045012305 UniProtKB/TrEMBL
  ENSSSCG00050027790 UniProtKB/TrEMBL
  ENSSSCG00055013824 UniProtKB/TrEMBL
  ENSSSCG00060067609 UniProtKB/TrEMBL
  ENSSSCG00065050032 UniProtKB/TrEMBL
  ENSSSCG00070011767 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052207 ENTREZGENE
  ENSSSCT00000052207.3 UniProtKB/TrEMBL
  ENSSSCT00000071066.2 UniProtKB/TrEMBL
  ENSSSCT00015001984.1 UniProtKB/TrEMBL
  ENSSSCT00025042542.1 UniProtKB/TrEMBL
  ENSSSCT00030007162.1 UniProtKB/TrEMBL
  ENSSSCT00035010419.1 UniProtKB/TrEMBL
  ENSSSCT00040105113.1 UniProtKB/TrEMBL
  ENSSSCT00045020935.1 UniProtKB/TrEMBL
  ENSSSCT00050037383.1 UniProtKB/TrEMBL
  ENSSSCT00055027267.1 UniProtKB/TrEMBL
  ENSSSCT00060092247.1 UniProtKB/TrEMBL
  ENSSSCT00065068507.1 UniProtKB/TrEMBL
  ENSSSCT00070022946.1 UniProtKB/TrEMBL
InterPro DUF4507 UniProtKB/TrEMBL
NCBI Gene C3H7orf26 ENTREZGENE
PANTHER PTHR14540 UniProtKB/TrEMBL
  SIMILAR TO PROTEIN C7ORF26 HOMOLOG UniProtKB/TrEMBL
Pfam DUF4507 UniProtKB/TrEMBL
UniProt A0A0B8S0B2 ENTREZGENE
  A0A286ZYR1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1TUI7 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QEU7_PIG UniProtKB/TrEMBL
  A0A8D0MAF6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1Z4A6 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:86026 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-01-10 INTS15  integrator complex subunit 15  C3H7orf26  chromosome 3 C7orf26 homolog  Symbol and/or name change 19259463 PROVISIONAL