SLC39A6 (solute carrier family 39 member 6) - Rat Genome Database

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Gene: SLC39A6 (solute carrier family 39 member 6) Sus scrofa
Analyze
Symbol: SLC39A6
Name: solute carrier family 39 member 6
RGD ID: 14170303
Description: ENCODES a protein that exhibits metal ion transmembrane transporter activity (inferred); zinc ion transmembrane transporter activity (inferred); INVOLVED IN epithelial to mesenchymal transition (inferred); intracellular zinc ion homeostasis (inferred); lymphocyte activation (inferred); ASSOCIATED WITH Breast Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 39 (zinc transporter), member 6 tv1; zinc transporter ZIP6
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,861,846 - 119,885,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,861,853 - 119,885,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26112,387,757 - 112,411,495 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
SLC39A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,861,846 - 119,885,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,861,853 - 119,885,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26112,387,757 - 112,411,495 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381836,108,531 - 36,129,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1836,108,531 - 36,129,385 (-)EnsemblGRCh38hg38GRCh38
GRCh371833,688,494 - 33,709,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,942,492 - 31,963,355 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,943,196 - 31,963,203NCBI
Celera1830,496,380 - 30,517,237 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1830,547,399 - 30,568,273 (-)NCBIHuRef
CHM1_11833,615,574 - 33,636,438 (-)NCBICHM1_1
T2T-CHM13v2.01836,300,097 - 36,320,904 (-)NCBIT2T-CHM13v2.0
Slc39a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,712,938 - 24,736,874 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,712,938 - 24,736,874 (-)EnsemblGRCm39 Ensembl
GRCm381824,579,881 - 24,603,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,579,881 - 24,603,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,738,382 - 24,762,318 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,722,891 - 24,744,582 (-)NCBIMGSCv36mm8
Celera1825,061,823 - 25,085,732 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1813.18NCBI
Slc39a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81816,139,621 - 16,160,163 (-)NCBIGRCr8
mRatBN7.21815,864,874 - 15,885,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,864,875 - 15,885,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1816,052,216 - 16,072,721 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,834,922 - 16,855,427 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01816,123,136 - 16,143,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,523,450 - 16,543,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,522,982 - 16,543,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01816,277,809 - 16,303,318 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,353,725 - 16,374,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,380,371 - 16,400,913 (-)NCBI
Celera1815,793,993 - 15,814,535 (-)NCBICelera
Cytogenetic Map18p12NCBI
Slc39a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,670,437 - 22,698,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,670,598 - 22,698,455 (-)NCBIChiLan1.0ChiLan1.0
SLC39A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21753,504,530 - 53,525,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11839,197,119 - 39,218,011 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01829,361,261 - 29,382,115 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,919,878 - 32,940,703 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,919,878 - 32,940,694 (-)Ensemblpanpan1.1panPan2
SLC39A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,059,193 - 54,080,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,059,193 - 54,080,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,484,787 - 53,506,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,029,546 - 54,050,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,029,546 - 54,051,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1753,712,679 - 53,734,108 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0753,736,059 - 53,757,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,028,706 - 54,049,911 (+)NCBIUU_Cfam_GSD_1.0
Slc39a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494449,839,576 - 49,860,672 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,167,334 - 9,189,345 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,166,989 - 9,188,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11844,681,718 - 44,702,741 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1844,681,508 - 44,702,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,141,804 - 19,163,079 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477910,399,198 - 10,432,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477910,400,581 - 10,433,405 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in SLC39A6
683 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000025953   ⟹   ENSSSCP00000027535
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6119,861,846 - 119,885,378 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000041174   ⟹   ENSSSCP00000031417
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl6119,861,848 - 119,885,802 (-)Ensembl
RefSeq Acc Id: XM_021096271   ⟹   XP_020951930
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16119,861,853 - 119,885,836 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021096272   ⟹   XP_020951931
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.16119,862,414 - 119,885,175 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020951930   ⟸   XM_021096271
- UniProtKB: A0A4X1VCY3 (UniProtKB/TrEMBL),   I3LTT7 (UniProtKB/TrEMBL),   M3V816 (UniProtKB/TrEMBL),   A0A4X1V730 (UniProtKB/TrEMBL),   A0A4X1VCZ0 (UniProtKB/TrEMBL),   A0A8D0HWU4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020951931   ⟸   XM_021096272
- UniProtKB: A0A4X1VCY3 (UniProtKB/TrEMBL),   I3LTT7 (UniProtKB/TrEMBL),   M3V816 (UniProtKB/TrEMBL),   A0A4X1V730 (UniProtKB/TrEMBL),   A0A4X1VCZ0 (UniProtKB/TrEMBL),   A0A8D0HWU4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031417   ⟸   ENSSSCT00000041174
Ensembl Acc Id: ENSSSCP00000027535   ⟸   ENSSSCT00000025953


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000027455 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005003541 UniProtKB/TrEMBL
  ENSSSCG00015019471 UniProtKB/TrEMBL
  ENSSSCG00025054220 UniProtKB/TrEMBL
  ENSSSCG00035021326 UniProtKB/TrEMBL
  ENSSSCG00045021326 UniProtKB/TrEMBL
  ENSSSCG00055010345 UniProtKB/TrEMBL
  ENSSSCG00065014016 UniProtKB/TrEMBL
  ENSSSCG00070023021 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025953 ENTREZGENE
  ENSSSCT00000025953.4 UniProtKB/TrEMBL
  ENSSSCT00005005297.1 UniProtKB/TrEMBL
  ENSSSCT00005005343.1 UniProtKB/TrEMBL
  ENSSSCT00015025699.1 UniProtKB/TrEMBL
  ENSSSCT00025074279.1 UniProtKB/TrEMBL
  ENSSSCT00035027805.1 UniProtKB/TrEMBL
  ENSSSCT00045036543.1 UniProtKB/TrEMBL
  ENSSSCT00055020237.1 UniProtKB/TrEMBL
  ENSSSCT00065018641.1 UniProtKB/TrEMBL
  ENSSSCT00070045825.1 UniProtKB/TrEMBL
  ENSSSCT00070045830.1 UniProtKB/TrEMBL
  ENSSSCT00070045834.1 UniProtKB/TrEMBL
  ENSSSCT00070045836.1 UniProtKB/TrEMBL
  ENSSSCT00070045840.1 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
  ZIP_Transporter UniProtKB/TrEMBL
NCBI Gene SLC39A6 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP6 UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt A0A4X1V716_PIG UniProtKB/TrEMBL
  A0A4X1V730 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VCY3 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VCZ0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0HWU4 ENTREZGENE, UniProtKB/TrEMBL
  I3LTT7 ENTREZGENE
  M3V816 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary I3LTT7 UniProtKB/TrEMBL
VGNC ID VGNC:93107 ENTREZGENE