Slc39a6 (solute carrier family 39 member 6) - Rat Genome Database

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Gene: Slc39a6 (solute carrier family 39 member 6) Chinchilla lanigera
Analyze
Symbol: Slc39a6
Name: solute carrier family 39 member 6
RGD ID: 8959254
Description: ENCODES a protein that exhibits zinc ion transmembrane transporter activity (ortholog); INVOLVED IN epithelial to mesenchymal transition (ortholog); intracellular zinc ion homeostasis (ortholog); lymphocyte activation (ortholog); ASSOCIATED WITH Breast Neoplasms (ortholog); esophagus squamous cell carcinoma (ortholog); Experimental Liver Cirrhosis (ortholog); FOUND IN apical plasma membrane (ortholog); endoplasmic reticulum (ortholog); lamellipodium membrane (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: solute carrier family 39 (zinc transporter), member 6; zinc transporter ZIP6
RGD Orthologs
Human
Mouse
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChiLan1.0 - Chinchilla ChiLan1.0 Assembly
Position:
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,670,437 - 22,698,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,670,598 - 22,698,455 (-)NCBIChiLan1.0ChiLan1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Transitive Annotation Pipeline Automated assignment of GO, PW and RDO ISO annotations across species
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
Slc39a6
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540222,670,437 - 22,698,591 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540222,670,598 - 22,698,455 (-)NCBIChiLan1.0ChiLan1.0
SLC39A6
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381836,108,531 - 36,129,340 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1836,108,531 - 36,129,385 (-)EnsemblGRCh38hg38GRCh38
GRCh371833,688,494 - 33,709,303 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361831,942,492 - 31,963,355 (-)NCBINCBI36Build 36hg18NCBI36
Build 341831,943,196 - 31,963,203NCBI
Celera1830,496,380 - 30,517,237 (-)NCBICelera
Cytogenetic Map18q12.2NCBI
HuRef1830,547,399 - 30,568,273 (-)NCBIHuRef
CHM1_11833,615,574 - 33,636,438 (-)NCBICHM1_1
T2T-CHM13v2.01836,300,097 - 36,320,904 (-)NCBIT2T-CHM13v2.0
Slc39a6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391824,712,938 - 24,736,874 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1824,712,938 - 24,736,874 (-)EnsemblGRCm39 Ensembl
GRCm381824,579,881 - 24,603,817 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1824,579,881 - 24,603,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv371824,738,382 - 24,762,318 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361824,722,891 - 24,744,582 (-)NCBIMGSCv36mm8
Celera1825,061,823 - 25,085,732 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1813.18NCBI
Slc39a6
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81816,139,621 - 16,160,163 (-)NCBIGRCr8
mRatBN7.21815,864,874 - 15,885,417 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1815,864,875 - 15,885,417 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1816,052,216 - 16,072,721 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01816,834,922 - 16,855,427 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01816,123,136 - 16,143,636 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01816,523,450 - 16,543,992 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1816,522,982 - 16,543,992 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01816,277,809 - 16,303,318 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41816,353,725 - 16,374,267 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11816,380,371 - 16,400,913 (-)NCBI
Celera1815,793,993 - 15,814,535 (-)NCBICelera
Cytogenetic Map18p12NCBI
SLC39A6
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21753,504,530 - 53,525,425 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11839,197,119 - 39,218,011 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01829,361,261 - 29,382,115 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11832,919,878 - 32,940,703 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1832,919,878 - 32,940,694 (-)Ensemblpanpan1.1panPan2
SLC39A6
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1754,059,193 - 54,080,582 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl754,059,193 - 54,080,582 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha753,484,787 - 53,506,210 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0754,029,546 - 54,050,763 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl754,029,546 - 54,051,203 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1753,712,679 - 53,734,108 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0753,736,059 - 53,757,253 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0754,028,706 - 54,049,911 (+)NCBIUU_Cfam_GSD_1.0
Slc39a6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494449,839,576 - 49,860,672 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365179,167,334 - 9,189,345 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365179,166,989 - 9,188,114 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC39A6
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6119,861,846 - 119,885,378 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16119,861,853 - 119,885,836 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26112,387,757 - 112,411,495 (-)NCBISscrofa10.2Sscrofa10.2susScr3
SLC39A6
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11844,681,718 - 44,702,741 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1844,681,508 - 44,702,754 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605019,141,804 - 19,163,079 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc39a6
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477910,399,198 - 10,432,869 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477910,400,581 - 10,433,405 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSCLAT00000015782   ⟹   ENSCLAP00000015620
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0 EnsemblNW_00495540222,670,437 - 22,698,591 (-)Ensembl
RefSeq Acc Id: XM_005372806   ⟹   XP_005372863
Type: CODING
Position:
Chinchilla AssemblyChrPosition (strand)Source
ChiLan1.0NW_00495540222,670,598 - 22,698,455 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_005372863 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCLAP00000015620
  ENSCLAP00000015620.1
Reference Protein Sequences
RefSeq Acc Id: XP_005372863   ⟸   XM_005372806
- UniProtKB: A0A8C2VJJ2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSCLAP00000015620   ⟸   ENSCLAT00000015782


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCLAG00000010738 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCLAT00000015782 ENTREZGENE
  ENSCLAT00000015782.1 UniProtKB/TrEMBL
InterPro ZIP UniProtKB/TrEMBL
NCBI Gene Slc39a6 ENTREZGENE
PANTHER SOLUTE CARRIER FAMILY 39 UniProtKB/TrEMBL
  ZINC TRANSPORTER ZIP6 UniProtKB/TrEMBL
Pfam Zip UniProtKB/TrEMBL
UniProt A0A8C2VJJ2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-08-03 Slc39a6  solute carrier family 39 member 6    solute carrier family 39 (zinc transporter), member 6  Symbol and/or name change 5135510 APPROVED