ZC3H7B (zinc finger CCCH-type containing 7B) - Rat Genome Database

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Gene: ZC3H7B (zinc finger CCCH-type containing 7B) Sus scrofa
Analyze
Symbol: ZC3H7B
Name: zinc finger CCCH-type containing 7B
RGD ID: 14165658
Description: ENCODES a protein that exhibits metal ion binding (inferred); miRNA binding (inferred); zinc ion binding (inferred); INVOLVED IN miRNA processing (inferred); post-transcriptional regulation of gene expression (inferred); ASSOCIATED WITH adenylosuccinase lyase deficiency (ortholog); common variable immunodeficiency 4 (ortholog); nephronophthisis-like nephropathy 1 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: zinc finger CCCH domain-containing protein 7B
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,148,627 - 7,201,059 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,148,624 - 7,201,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZC3H7BPigadenylosuccinase lyase deficiency  ISOZC3H7B (Homo sapiens)8554872ClinVar Annotator: match by term: Adenylosuccinate lyase deficiencyClinVarPMID:28492532
ZC3H7BPigcommon variable immunodeficiency 4  ISOZC3H7B (Homo sapiens)8554872ClinVar Annotator: match by term: Immunodeficiency more ...ClinVarPMID:19666484 and PMID:28492532
ZC3H7BPignephronophthisis-like nephropathy 1  ISOZC3H7B (Homo sapiens)8554872ClinVar Annotator: match by term: Nephronophthisis-like nephropathy 1ClinVarPMID:28492532
ZC3H7BPigRubinstein-Taybi syndrome  ISOZC3H7B (Homo sapiens)8554872ClinVar Annotator: match by term: Rubinstein-Taybi syndrome 2ClinVarPMID:28492532


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZC3H7BPigmiRNA processing involved_inIBAPANTHER:PTN001029180 more ...150520179 GO_CentralGO_REF:0000033
ZC3H7BPigmiRNA processing involved_inIEAUniProtKB:Q9UGR2 and ensembl:ENSP00000345793150520179 EnsemblGO_REF:0000107
ZC3H7BPigpost-transcriptional regulation of gene expression acts_upstream_of_positive_effectIEAUniProtKB:Q9UGR2 and ensembl:ENSP00000345793150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ZC3H7BPigmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043
ZC3H7BPigmetal ion binding enablesIEAInterPro:IPR000571 and InterPro:IPR036855150520179 InterProGO_REF:0000002
ZC3H7BPigmiRNA binding enablesIBAPANTHER:PTN001029180 more ...150520179 GO_CentralGO_REF:0000033
ZC3H7BPigmiRNA binding enablesIEAUniProtKB:Q9UGR2 and ensembl:ENSP00000345793150520179 EnsemblGO_REF:0000107
ZC3H7BPigmiRNA binding enablesIEAInterPro:IPR039691150520179 InterProGO_REF:0000002
ZC3H7BPigprotein binding enablesISOUniProtKB:Q007219068941 PMID:15047801IntActPMID:15047801
ZC3H7BPigzinc ion binding enablesIEAUniProtKB-KW:KW-0863150520179 UniProtGO_REF:0000043

PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  



ZC3H7B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl57,148,627 - 7,201,059 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.157,148,624 - 7,201,429 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
ZC3H7B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382241,301,525 - 41,360,147 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2241,301,525 - 41,360,147 (+)EnsemblGRCh38hg38GRCh38
GRCh372241,697,529 - 41,756,151 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362240,027,513 - 40,086,097 (+)NCBINCBI36Build 36hg18NCBI36
Celera2225,503,966 - 25,562,550 (+)NCBICelera
Cytogenetic Map22q13.2NCBI
HuRef2224,664,610 - 24,722,657 (+)NCBIHuRef
CHM1_12241,657,425 - 41,716,067 (+)NCBICHM1_1
T2T-CHM13v2.02241,780,357 - 41,838,975 (+)NCBIT2T-CHM13v2.0
Zc3h7b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391581,629,299 - 81,680,470 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1581,629,258 - 81,680,461 (+)EnsemblGRCm39 Ensembl
GRCm381581,745,098 - 81,796,269 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1581,745,057 - 81,796,260 (+)EnsemblGRCm38mm10GRCm38
MGSCv371581,575,278 - 81,626,699 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361581,572,103 - 81,623,524 (+)NCBIMGSCv36mm8
Celera1583,863,483 - 83,915,077 (+)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1538.23NCBI
Zc3h7b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87115,142,245 - 115,190,513 (+)NCBIGRCr8
mRatBN7.27113,262,142 - 113,310,399 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7113,262,165 - 113,310,399 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx7115,045,600 - 115,073,001 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07117,269,099 - 117,296,498 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07117,238,532 - 117,265,933 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.07122,978,999 - 123,027,166 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7122,979,021 - 123,027,150 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.07122,955,708 - 123,003,695 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.47120,117,097 - 120,144,776 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.17120,130,538 - 120,178,249 (+)NCBI
Celera7109,602,056 - 109,629,292 (+)NCBICelera
Cytogenetic Map7q34NCBI
Zc3h7b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541326,925,943 - 26,951,040 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541326,907,883 - 26,951,352 (+)NCBIChiLan1.0ChiLan1.0
ZC3H7B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22351,134,145 - 51,192,172 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12253,834,000 - 53,892,019 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02222,198,403 - 22,256,455 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12240,286,098 - 40,343,159 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2240,286,098 - 40,343,159 (+)Ensemblpanpan1.1panPan2
ZC3H7B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11023,882,379 - 23,944,850 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1023,884,981 - 23,920,131 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1023,814,502 - 23,876,996 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01024,626,532 - 24,689,038 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1024,626,546 - 24,688,967 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11024,343,251 - 24,405,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01024,664,137 - 24,726,628 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01024,838,614 - 24,901,106 (-)NCBIUU_Cfam_GSD_1.0
Zc3h7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049457,522,466 - 7,573,972 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936492532,632 - 584,574 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936492532,883 - 584,142 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZC3H7B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11923,840,088 - 23,902,575 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1923,862,120 - 23,902,665 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666045101,517,891 - 101,582,618 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zc3h7b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247527,193,846 - 7,216,469 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247527,191,287 - 7,233,982 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ZC3H7B
1083 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000052441   ⟹   ENSSSCP00000040533
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl57,148,627 - 7,201,059 (-)Ensembl
RefSeq Acc Id: XM_021091458   ⟹   XP_020947117
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.157,148,624 - 7,201,429 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021091459   ⟹   XP_020947118
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.157,148,624 - 7,178,549 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020947117   ⟸   XM_021091458
- UniProtKB: A0A287AGX7 (UniProtKB/TrEMBL),   A0A8D0VCT1 (UniProtKB/TrEMBL),   A0A8D1XXV2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020947118   ⟸   XM_021091459
- UniProtKB: A0A287AGX7 (UniProtKB/TrEMBL),   A0A8D0VCT1 (UniProtKB/TrEMBL),   A0A8D1XXV2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000040533   ⟸   ENSSSCT00000052441
C3H1-type



1 to 40 of 48 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000033036 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015011166 UniProtKB/TrEMBL
  ENSSSCG00025012124 UniProtKB/TrEMBL
  ENSSSCG00030006951 UniProtKB/TrEMBL
  ENSSSCG00035049744 UniProtKB/TrEMBL
  ENSSSCG00045031056 UniProtKB/TrEMBL
  ENSSSCG00055017665 UniProtKB/TrEMBL
  ENSSSCG00060051904 UniProtKB/TrEMBL
  ENSSSCG00065023869 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000052441 ENTREZGENE
  ENSSSCT00000052441.3 UniProtKB/TrEMBL
  ENSSSCT00015014694.1 UniProtKB/TrEMBL
  ENSSSCT00025016024.1 UniProtKB/TrEMBL
  ENSSSCT00025016056.1 UniProtKB/TrEMBL
  ENSSSCT00030009320.1 UniProtKB/TrEMBL
  ENSSSCT00030009327.1 UniProtKB/TrEMBL
  ENSSSCT00035066287.1 UniProtKB/TrEMBL
  ENSSSCT00045052952.1 UniProtKB/TrEMBL
  ENSSSCT00055035114.1 UniProtKB/TrEMBL
  ENSSSCT00055035263.1 UniProtKB/TrEMBL
  ENSSSCT00060070644.1 UniProtKB/TrEMBL
  ENSSSCT00065031776.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro TPR-like_helical_dom_sf UniProtKB/TrEMBL
  TPR_repeat UniProtKB/TrEMBL
  ZC3H7A/B UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/TrEMBL
  Znf_CCCH UniProtKB/TrEMBL
  Znf_CCCH_sf UniProtKB/TrEMBL
NCBI Gene ZC3H7B ENTREZGENE
PANTHER PTHR14928 UniProtKB/TrEMBL
  ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 7B UniProtKB/TrEMBL
Pfam TPR_8 UniProtKB/TrEMBL
  zf-CCCH UniProtKB/TrEMBL
PROSITE TPR UniProtKB/TrEMBL
  ZF_C3H1 UniProtKB/TrEMBL
SMART TPR UniProtKB/TrEMBL
  ZnF_C3H1 UniProtKB/TrEMBL
Superfamily-SCOP SSF48452 UniProtKB/TrEMBL
1 to 40 of 48 rows