LOC100513415 (putative tripartite motif-containing protein 75) - Rat Genome Database

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Gene: LOC100513415 (putative tripartite motif-containing protein 75) Sus scrofa
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Symbol: LOC100513415
Name: putative tripartite motif-containing protein 75
RGD ID: 14157473
Description: ENCODES a protein that exhibits metal ion binding (inferred); zinc ion binding (inferred); INVOLVED IN female meiosis I (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Bonobo
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1844,145,897 - 44,147,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2846,150,117 - 46,151,644 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
cytosol  (IBA)

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100513415
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1844,145,897 - 44,147,246 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2846,150,117 - 46,151,644 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TRIM75
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384165,053,866 - 165,060,554 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4165,053,866 - 165,060,554 (+)EnsemblGRCh38hg38GRCh38
GRCh374165,975,018 - 165,981,706 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 364166,199,750 - 166,201,156 (+)NCBINCBI36Build 36hg18NCBI36
Celera4163,311,477 - 163,313,071 (+)NCBICelera
Cytogenetic Map4q32.3NCBI
HuRef4161,733,390 - 161,734,984 (+)NCBIHuRef
CHM1_14165,956,622 - 165,958,216 (+)NCBICHM1_1
T2T-CHM13v2.04168,401,350 - 168,408,038 (+)NCBIT2T-CHM13v2.0
Trim75
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39865,434,303 - 65,440,296 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl865,433,536 - 65,440,483 (-)EnsemblGRCm39 Ensembl
GRCm38864,981,651 - 64,987,644 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl864,980,884 - 64,987,831 (-)EnsemblGRCm38mm10GRCm38
MGSCv37867,505,550 - 67,511,543 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36867,910,640 - 67,916,635 (-)NCBIMGSCv36mm8
Celera867,543,020 - 67,549,012 (-)NCBICelera
Cytogenetic Map8B3.1NCBI
cM Map832.48NCBI
Trim75l-ps1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81629,502,480 - 29,503,363 (+)NCBIGRCr8
mRatBN7.21624,736,009 - 24,737,192 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01626,615,219 - 26,618,601 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01626,498,362 - 26,501,313 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41626,476,901 - 26,478,239 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1624,819,959 - 24,823,341 (+)NCBICelera
Cytogenetic Map16p13NCBI
TRIM75
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23162,804,607 - 162,806,013 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14163,162,692 - 163,164,098 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04157,250,198 - 157,253,032 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14169,302,587 - 169,303,993 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4169,302,587 - 169,303,993 (+)Ensemblpanpan1.1panPan2

Variants

.
Variants in LOC100513415
29 total Variants

Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003128995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: XM_003128995   ⟹   XP_003129043
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1844,145,897 - 44,147,246 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003129043   ⟸   XM_003128995
- UniProtKB: A0A5G2QWY1 (UniProtKB/TrEMBL),   A0A8D1CSL6 (UniProtKB/TrEMBL),   A0A8D1TUJ0 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
B box-type   B30.2/SPRY   RING-type


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000051162 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015031825 UniProtKB/TrEMBL
  ENSSSCG00025065690 UniProtKB/TrEMBL
  ENSSSCG00035032700 UniProtKB/TrEMBL
  ENSSSCG00040038726 UniProtKB/TrEMBL
  ENSSSCG00045006745 UniProtKB/TrEMBL
  ENSSSCG00050077196 UniProtKB/TrEMBL
  ENSSSCG00055003119 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000079579 ENTREZGENE
  ENSSSCT00000079579.1 UniProtKB/TrEMBL
  ENSSSCT00015042112.1 UniProtKB/TrEMBL
  ENSSSCT00025090147.1 UniProtKB/TrEMBL
  ENSSSCT00035043311.1 UniProtKB/TrEMBL
  ENSSSCT00040051759.1 UniProtKB/TrEMBL
  ENSSSCT00045011192.1 UniProtKB/TrEMBL
  ENSSSCT00050106222.1 UniProtKB/TrEMBL
  ENSSSCT00055006026.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin_SPRY UniProtKB/TrEMBL
  ConA-like_dom_sf UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY/PRY_TRIM75 UniProtKB/TrEMBL
  SPRY_dom UniProtKB/TrEMBL
  TRIM/RBCC UniProtKB/TrEMBL
  Znf_B-box UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report ssc:100513415 UniProtKB/TrEMBL
NCBI Gene LOC100513415 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE TRIM UniProtKB/TrEMBL
  TRIPARTITE MOTIF-CONTAINING PROTEIN 75-RELATED UniProtKB/TrEMBL
Pfam PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  zf-B_box UniProtKB/TrEMBL
  zf-C3HC4_4 UniProtKB/TrEMBL
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  ZF_BBOX UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
SMART BBOX UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  RING UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP B-box zinc-binding domain UniProtKB/TrEMBL
  RING/U-box UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
UniProt A0A5G2QWY1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0NG11_PIG UniProtKB/TrEMBL
  A0A8D0T046_PIG UniProtKB/TrEMBL
  A0A8D1CSL6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TUJ0 ENTREZGENE, UniProtKB/TrEMBL