OLFML1 (olfactomedin like 1) - Rat Genome Database

Name: OLFML1
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: OLFML1 (olfactomedin like 1) Sus scrofa

Analyze

Symbol:

OLFML1

Name:

olfactomedin like 1

RGD ID:

14153247

Description:

INVOLVED IN signal transduction (inferred); ASSOCIATED WITH genetic disease (ortholog); FOUND IN extracellular space (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

olfactomedin-like protein 1

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	OLFML1 (olfactomedin like 1)	HGNC	Ensembl, NCBI, OrthoDB
Mus musculus (house mouse):	Olfml1 (olfactomedin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus norvegicus (Norway rat):	Olfml1 (olfactomedin-like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Olfml1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	OLFML1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	OLFML1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Olfml1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	OLFML1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Olfml1 (olfactomedin like 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	2,145,678 - 2,171,875 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	2,617,008 - 2,654,701 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

signal transduction (IEA)

Cellular Component

extracellular space (IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

OLFML1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	9	2,145,678 - 2,171,875 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	2,617,008 - 2,654,701 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

OLFML1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	7,485,506 - 7,511,377 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	7,485,388 - 7,511,377 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	11	7,506,737 - 7,532,608 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	7,463,331 - 7,489,140 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	11	7,463,573 - 7,489,137	NCBI
Celera	11	7,625,730 - 7,651,738 (+)	NCBI		Celera
Cytogenetic Map	11	p15.4	NCBI
HuRef	11	7,165,129 - 7,191,140 (+)	NCBI		HuRef
CHM1_1	11	7,505,519 - 7,531,529 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	7,543,862 - 7,569,737 (+)	NCBI		T2T-CHM13v2.0

Olfml1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	107,166,640 - 107,190,572 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	107,166,653 - 107,190,301 (+)	Ensembl		GRCm39 Ensembl
GRCm38	7	107,567,433 - 107,591,365 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	107,567,446 - 107,591,094 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	114,710,947 - 114,734,879 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	107,358,623 - 107,382,271 (+)	NCBI		MGSCv36	mm8
Celera	7	107,543,398 - 107,567,221 (+)	NCBI		Celera
Cytogenetic Map	7	E3	NCBI
cM Map	7	57.21	NCBI

Olfml1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	170,889,912 - 170,914,300 (+)	NCBI		GRCr8
mRatBN7.2	1	161,478,129 - 161,502,541 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	161,478,242 - 161,502,537 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	169,747,308 - 169,771,491 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	176,933,303 - 176,957,486 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	169,618,081 - 169,642,351 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	171,793,782 - 171,818,074 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	171,793,782 - 171,818,068 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	178,792,340 - 178,816,636 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	164,953,064 - 164,977,360 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	165,048,540 - 165,072,958 (+)	NCBI
Celera	1	159,382,450 - 159,406,508 (+)	NCBI		Celera
Cytogenetic Map	1	q33	NCBI

Olfml1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955414	23,240,205 - 23,269,620 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955414	23,240,469 - 23,267,380 (+)	NCBI	ChiLan1.0	ChiLan1.0

OLFML1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	9,880,047 - 9,912,924 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	9,843,463 - 9,876,040 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	7,580,561 - 7,606,630 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	7,261,192 - 7,288,514 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	7,261,192 - 7,288,508 (+)	Ensembl	panpan1.1		panPan2

OLFML1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	21	31,136,218 - 31,162,405 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	21	30,986,521 - 31,162,414 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	21	30,706,146 - 30,732,298 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	21	32,001,461 - 32,027,657 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	21	31,737,706 - 32,027,664 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	21	31,273,734 - 31,299,861 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	21	31,436,581 - 31,462,743 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	21	31,732,238 - 31,758,591 (+)	NCBI		UU_Cfam_GSD_1.0

Olfml1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	54,340,466 - 54,362,975 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936841	724,386 - 747,592 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936841	724,410 - 747,518 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

OLFML1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	57,327,951 - 57,354,150 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	57,329,146 - 57,353,471 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666038	155,059,123 - 155,085,516 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Olfml1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624817	9,196,381 - 9,219,125 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in OLFML1
1291 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1
Low	10	4	1	4	2	2	2	2	1
Below cutoff			2			6		1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_021062306	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU861932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01126734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_021062306 ⟹ XP_020917965

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	9	2,145,678 - 2,171,875 (-)	NCBI

Sequence:

show sequence

CCGCCCCCGCCCCCCACCCCACCCCACGCACACCCACCCAGGCCTGCAAGAGGGTGCAGCCGCT
GGCCTGGGGAGGGTCTGCGGGTGCCAAAGGTGACAGCAGCAGATGCTGGACCCCGGGAGCTCTC
TGCCCCAAGTCGCCTGCAAGGCCTCTGGGGACTGGCCTGCCCACAGCTGGACCTGATCACCAGC
TCGCAAAGTGAGATCACGCAGCTGGCGGCGTAACCAGACGCGCAGACCTTGCTCGCTGGTGGTT
TTTTTTTTTTTGGTGGGTTTTCTCTGCAGCGGCTAGGAAGCGGGAGGCCTCCACCTGGCCCCTT
GGGCCGACTTCGAGGAGCCAGAGCAGAGAGATTCCCGCCCGGGGTGGCGTGCAGGACGATGCTG
GCTCTTACGCGAGCTTCTGCCTTCAGGGTTCTGGTCCTCACCGCCCTTCTGCCCCCGCCGCGGT
GCGCCCAGGACCCGGGCATGGTGCATTACATCTATCAGCGCTTCCAGGTCTTGGAGCAAGGACT
GCAGAAATGCACCCAAGCCACGAGGGCGTACATCCAAGAATTCCAAGAGTTCTCGAAAAACATA
TCCACGCTGCTGGGCCGGTGTCAGAGCCACACGAGTGAGTACAAGAGCGCGGTGCATAACCTCG
CCCTGAGGGTCGAGCGTGCCCAGCGCGAGATCGACTACCTGGAGTACCTGCGGGAAGCCGACGC
CTGCGTCGAATCGGAGGACAAGACGCTGGCAGAGAATCTCATCCAAGACGCTGAGGAAAAGAAG
AAGATCCGGACGCTGCTGAACGCAAGCTGTGACAACATGCTGATGGGCATAAAGTCTCTGAAAA
TAGTGAAGAAGACGGTGGACACAGACGGCTCTTGGATGAAAGACGCTGCCGGTGACTCTCCAAA
GGTTTATTTCTTCCCTGGGCCCCGGAGCAACACGGTCTGGGAATTTGCCAACATGCGGGCATTC
ACGGAGGACAGCACCAAGCCCGGCCCCCGGAAGCTGATCCTCACACACTCCTGGNCAGGCACAG
GCCAAGTGATCTACCAAGGTTTCCTGTTTTTTCACAACCACGGGACCCCCAATGAGATAGTCAA
GTACAACCTGCACAAGAGGAGCCTGGAAGACCGAATGCTGCTCTCGGGAGGGGTCGGCAGAGCC
CCGGTCTACCAGCACTCCGCCGCCACGTACATTGACCTGGCCGTGGACGAGCACGGGCTCTGGG
CCATCCACTCGGGGCCAGGCATCCAGGGCCACTTGGTTCTCACGAAAATCGCGGCCGACACCCT
GGGTGTGGAACACTCCTGGGACACTCCGTGCCGAAGCCAGGACGCCGAAGCCTCGTTCCTCGTG
TGTGGGGTGCTCTACGTGGTCTACAGTTCTGGGGGCCACGGCCCGCATCGCATCACCTGCNGTT
ACGACCCGCTGGGCACTGTCACGGAGGACAGTCTGCCCAGCCTGTTCTTCCCCAGGCGGCCGAG
AAGTCACTCTGTGATCCATTACAACCCCAGAGATAAGCAACTCTATGCCTGGAACGATGGGAAC
CAGATCATTTACAGACTCCAGACAAAGAGAAAGCAGCCTCTGGAGTGACGCGTCCCAGCTGGGA
GGGGGAGTGCCAGGAGCGCTGCTCTCCGGGACAGGGAGCCACGGCCCCTCGCAAGACAGCACCC
TCCTGATCACACACGGAGGGGGGCTGGAAGTGGGAAGGCACCCGCATCCTTATCGGATGGCACC
GCTGTAGGTATCTTTCCGGAGCTCAGATAAGAGTCAGGAATTTTCAACACCGTCCACGCCCCAT
CCAAACCTCCCGGTGCTCAAGGCCCTCCACTACTGACCCAGCTTCTTCCTTTCTTCGCATTTAC
TCCACCTCCCCTCGCCCCCGCCCCTTCCCCACCCTCCCAGCCCTTAGAAATGCAGGCAACCTTC
TAATACTGGGGTTTCTCTCCTCCCGCCTTTGCTCAGGCTCCTTGCTCTTTCTCGAATGCCCATT
GAGGTGCCTCCATGTTTCACGGCCCAGCTGCTGTGCTCTTTCTTATTGATGTTTAATCTCACTT
TCTTATTGATGTTTCTCATTGAGGTTAATCCCTGGTTCTGGAGCTCCACCACGCTAGGCGATGT
TCTAATAAAGTGAAGACGTTACCTTCTGAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_020917965	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000036604.1

RefSeq Acc Id:

XP_020917965 ⟸ XM_021062306

- UniProtKB:

A0A481D9A4 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MLALTRASAFRVLVLTALLPPPRCAQDPGMVHYIYQRFQVLEQGLQKCTQATRAYIQEFQEFSK
NISTLLGRCQSHTSEYKSAVHNLALRVERAQREIDYLEYLREADACVESEDKTLAENLIQDAEE
KKKIRTLLNASCDNMLMGIKSLKIVKKTVDTDGSWMKDAAGDSPKVYFFPGPRSNTVWEFANMR
AFTEDSTKPGPRKLILTHSWXGTGQVIYQGFLFFHNHGTPNEIVKYNLHKRSLEDRMLLSGGVG
RAPVYQHSAATYIDLAVDEHGLWAIHSGPGIQGHLVLTKIAADTLGVEHSWDTPCRSQDAEASF
LVCGVLYVVYSSGGHGPHRITCXYDPLGTVTEDSLPSLFFPRRPRSHSVIHYNPRDKQLYAWND
GNQIIYRLQTKRKQPLE

hide sequence

Protein Domains

Olfactomedin-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000038540	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000066003.3	UniProtKB/TrEMBL
InterPro	Olfac-like_dom	UniProtKB/TrEMBL
NCBI Gene	OLFML1	ENTREZGENE
PANTHER	OLFACTOMEDIN-RELATED	UniProtKB/TrEMBL
	PTHR23192:SF13	UniProtKB/TrEMBL
Pfam	OLF	UniProtKB/TrEMBL
PROSITE	OLF	UniProtKB/TrEMBL
SMART	OLF	UniProtKB/TrEMBL
UniProt	A0A286ZY90_PIG	UniProtKB/TrEMBL
	A0A481D9A4	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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