ARHGEF3 (Rho guanine nucleotide exchange factor 3) - Rat Genome Database

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Gene: ARHGEF3 (Rho guanine nucleotide exchange factor 3) Sus scrofa
Analyze
Symbol: ARHGEF3
Name: Rho guanine nucleotide exchange factor 3
RGD ID: 14127779
Description: ENCODES a protein that exhibits guanyl-nucleotide exchange factor activity (inferred); INVOLVED IN intracellular signal transduction (inferred); FOUND IN cytoplasm (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1338,581,574 - 38,657,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11338,582,618 - 38,925,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21342,429,458 - 42,455,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model



Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARHGEF3Pigintracellular signal transduction involved_inIEAInterPro:IPR001331150520179 InterProGO_REF:0000002
ARHGEF3Pigpositive regulation of Rho protein signal transduction involved_inIBAFB:FBgn0035574 and PANTHER:PTN000517811150520179 GO_CentralGO_REF:0000033

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
ARHGEF3Pigcytoplasm located_inIEAUniProtKB-SubCell:SL-0086150520179 UniProtGO_REF:0000044

Molecular Function

  

PMID:22301074   PMID:30032202  



ARHGEF3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1338,581,574 - 38,657,128 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11338,582,618 - 38,925,599 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21342,429,458 - 42,455,396 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ARHGEF3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38356,727,420 - 57,079,268 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl356,727,418 - 57,079,329 (-)EnsemblGRCh38hg38GRCh38
GRCh37356,761,448 - 57,113,296 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36356,736,486 - 56,810,993 (-)NCBINCBI36Build 36hg18NCBI36
Build 34356,736,485 - 56,810,993NCBI
Celera356,727,164 - 57,078,931 (-)NCBICelera
Cytogenetic Map3p14.3NCBI
HuRef356,809,905 - 57,161,427 (-)NCBIHuRef
CHM1_1356,712,114 - 57,063,671 (-)NCBICHM1_1
T2T-CHM13v2.0356,767,765 - 57,119,568 (-)NCBIT2T-CHM13v2.0
Arhgef3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391426,836,418 - 27,125,873 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1426,836,856 - 27,125,868 (+)EnsemblGRCm39 Ensembl
GRCm381427,114,461 - 27,403,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1427,114,899 - 27,403,911 (+)EnsemblGRCm38mm10GRCm38
MGSCv371428,051,225 - 28,217,090 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361426,064,923 - 26,230,788 (+)NCBIMGSCv36mm8
Celera1423,496,924 - 23,635,464 (+)NCBICelera
Cytogenetic Map14A3NCBI
cM Map1416.09NCBI
Arhgef3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8162,308,311 - 2,588,634 (+)NCBIGRCr8
mRatBN7.2162,301,573 - 2,581,951 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl162,300,138 - 2,581,945 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx162,519,162 - 2,588,620 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0163,664,854 - 3,734,303 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0162,523,968 - 2,593,442 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0162,743,714 - 3,026,768 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl162,743,823 - 3,026,760 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0162,716,264 - 2,994,163 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4162,595,636 - 2,665,051 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1162,473,664 - 2,663,130 (+)NCBI
Celera162,477,340 - 2,546,773 (+)NCBICelera
Cytogenetic Map16p16NCBI
Arhgef3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554306,513,765 - 6,834,892 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554306,515,949 - 6,837,997 (-)NCBIChiLan1.0ChiLan1.0
ARHGEF3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2256,714,391 - 57,058,722 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1356,719,160 - 57,063,481 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0356,663,382 - 57,012,955 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1357,878,054 - 58,223,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl357,878,054 - 58,179,339 (-)Ensemblpanpan1.1panPan2
ARHGEF3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12033,318,255 - 33,625,364 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2033,311,630 - 33,623,704 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2033,245,620 - 33,552,246 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02033,590,514 - 33,894,766 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2033,590,505 - 33,895,184 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12033,039,576 - 33,340,539 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02033,398,192 - 33,701,068 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02033,569,536 - 33,873,906 (+)NCBIUU_Cfam_GSD_1.0
Arhgef3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118173,981,524 - 174,282,332 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364737,119,501 - 7,291,495 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364737,120,097 - 7,387,797 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARHGEF3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12218,059,377 - 18,398,742 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2218,058,302 - 18,398,213 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666041148,467,024 - 148,812,742 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arhgef3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624822347,001 - 539,196 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624822226,276 - 536,381 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in ARHGEF3
8567 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000022976   ⟹   ENSSSCP00000019522
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1338,582,631 - 38,776,643 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000038289   ⟹   ENSSSCP00000050906
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1338,582,622 - 38,925,571 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000055049   ⟹   ENSSSCP00000042742
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1338,582,622 - 38,629,816 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000057110   ⟹   ENSSSCP00000058174
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1338,581,574 - 38,657,128 (-)Ensembl
RefSeq Acc Id: XM_021068991   ⟹   XP_020924650
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11338,582,618 - 38,776,658 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068992   ⟹   XP_020924651
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11338,582,618 - 38,925,599 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068993   ⟹   XP_020924652
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11338,582,618 - 38,889,188 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068994   ⟹   XP_020924653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11338,582,618 - 38,925,579 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021068995   ⟹   XP_020924654
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11338,582,618 - 38,657,152 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020924651   ⟸   XM_021068992
- Peptide Label: isoform X2
- UniProtKB: A0A287B368 (UniProtKB/TrEMBL),   A0A4X1VMH0 (UniProtKB/TrEMBL),   A0A287AFI5 (UniProtKB/TrEMBL),   A0A4X1VK27 (UniProtKB/TrEMBL),   A0A8D0X1K2 (UniProtKB/TrEMBL),   A0A8D1C9Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924653   ⟸   XM_021068994
- Peptide Label: isoform X2
- UniProtKB: A0A287B368 (UniProtKB/TrEMBL),   A0A4X1VMH0 (UniProtKB/TrEMBL),   A0A287AFI5 (UniProtKB/TrEMBL),   A0A4X1VK27 (UniProtKB/TrEMBL),   A0A8D0X1K2 (UniProtKB/TrEMBL),   A0A8D1C9Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924652   ⟸   XM_021068993
- Peptide Label: isoform X2
- UniProtKB: A0A287B368 (UniProtKB/TrEMBL),   A0A4X1VMH0 (UniProtKB/TrEMBL),   A0A287AFI5 (UniProtKB/TrEMBL),   A0A4X1VK27 (UniProtKB/TrEMBL),   A0A8D0X1K2 (UniProtKB/TrEMBL),   A0A8D1C9Q4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924650   ⟸   XM_021068991
- Peptide Label: isoform X1
- UniProtKB: A0A4X1VMH5 (UniProtKB/TrEMBL),   A0A8D0X215 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020924654   ⟸   XM_021068995
- Peptide Label: isoform X3
- UniProtKB: A0A287BP24 (UniProtKB/TrEMBL),   A0A4X1VFN5 (UniProtKB/TrEMBL),   A0A287AFI5 (UniProtKB/TrEMBL),   A0A4X1VK27 (UniProtKB/TrEMBL),   A0A8D1C9Q4 (UniProtKB/TrEMBL),   A0A8D1X1W4 (UniProtKB/TrEMBL)
- Sequence:
DH   PH



1 to 40 of 94 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000030359 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015070127 UniProtKB/TrEMBL
  ENSSSCG00025026828 UniProtKB/TrEMBL
  ENSSSCG00030045005 UniProtKB/TrEMBL
  ENSSSCG00035057428 UniProtKB/TrEMBL
  ENSSSCG00040061468 UniProtKB/TrEMBL
  ENSSSCG00045026200 UniProtKB/TrEMBL
  ENSSSCG00050005142 UniProtKB/TrEMBL
  ENSSSCG00055009269 UniProtKB/TrEMBL
  ENSSSCG00060076303 UniProtKB/TrEMBL
  ENSSSCG00065012563 UniProtKB/TrEMBL
  ENSSSCG00070024982 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000055049.3 UniProtKB/TrEMBL
  ENSSSCT00000057110 ENTREZGENE
  ENSSSCT00000057110.3 UniProtKB/TrEMBL
  ENSSSCT00015093923.1 UniProtKB/TrEMBL
  ENSSSCT00015093971.1 UniProtKB/TrEMBL
  ENSSSCT00015094015.1 UniProtKB/TrEMBL
  ENSSSCT00025036314.1 UniProtKB/TrEMBL
  ENSSSCT00025036470.1 UniProtKB/TrEMBL
  ENSSSCT00025036583.1 UniProtKB/TrEMBL
  ENSSSCT00030062774.1 UniProtKB/TrEMBL
  ENSSSCT00030062794.1 UniProtKB/TrEMBL
  ENSSSCT00030062812.1 UniProtKB/TrEMBL
  ENSSSCT00030062829.1 UniProtKB/TrEMBL
  ENSSSCT00035076808.1 UniProtKB/TrEMBL
  ENSSSCT00035076817.1 UniProtKB/TrEMBL
  ENSSSCT00035076823.1 UniProtKB/TrEMBL
  ENSSSCT00040083656.1 UniProtKB/TrEMBL
  ENSSSCT00040083809.1 UniProtKB/TrEMBL
  ENSSSCT00040083903.1 UniProtKB/TrEMBL
  ENSSSCT00045044544.1 UniProtKB/TrEMBL
  ENSSSCT00045044656.1 UniProtKB/TrEMBL
  ENSSSCT00045044758.1 UniProtKB/TrEMBL
  ENSSSCT00045044890.1 UniProtKB/TrEMBL
  ENSSSCT00045045033.1 UniProtKB/TrEMBL
  ENSSSCT00050007042.1 UniProtKB/TrEMBL
  ENSSSCT00050007048.1 UniProtKB/TrEMBL
  ENSSSCT00050007053.1 UniProtKB/TrEMBL
  ENSSSCT00055018069.1 UniProtKB/TrEMBL
1 to 40 of 94 rows