ATOH7 (atonal bHLH transcription factor 7) - Rat Genome Database

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Gene: ATOH7 (atonal bHLH transcription factor 7) Sus scrofa
Analyze
Symbol: ATOH7
Name: atonal bHLH transcription factor 7
RGD ID: 14097652
Description: ENCODES a protein that exhibits protein dimerization activity (inferred); sequence-specific double-stranded DNA binding (inferred); transcription cis-regulatory region binding (inferred); INVOLVED IN circadian rhythm (ortholog); entrainment of circadian clock (ortholog); neural retina development (ortholog); ASSOCIATED WITH Autosomal Dominant Intellectual Developmental Disorder 70 (ortholog); Foveal Hypoplasia (ortholog); Persistent Hyperplastic Primary Vitreous, Autosomal Recessive (ortholog); FOUND IN axon (inferred); cell projection (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atonal homolog 7; protein atonal homolog 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,400,980 - 71,401,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,398,939 - 71,402,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,410,544 - 77,412,605 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ATOH7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1471,400,980 - 71,401,447 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11471,398,939 - 71,402,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21477,410,544 - 77,412,605 (-)NCBISscrofa10.2Sscrofa10.2susScr3
ATOH7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381068,230,595 - 68,232,113 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1068,230,595 - 68,232,113 (-)EnsemblGRCh38hg38GRCh38
GRCh371069,990,352 - 69,991,870 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361069,660,387 - 69,661,861 (-)NCBINCBI36Build 36hg18NCBI36
Build 341069,660,389 - 69,661,861NCBI
Celera1063,264,910 - 63,266,384 (-)NCBICelera
Cytogenetic Map10q21.3NCBI
HuRef1063,990,057 - 63,991,575 (-)NCBIHuRef
CHM1_11070,272,108 - 70,273,626 (-)NCBICHM1_1
T2T-CHM13v2.01069,099,395 - 69,100,913 (-)NCBIT2T-CHM13v2.0
Atoh7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391062,935,564 - 62,937,059 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1062,935,430 - 62,937,058 (+)EnsemblGRCm39 Ensembl
GRCm381063,099,785 - 63,101,280 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1063,099,651 - 63,101,279 (+)EnsemblGRCm38mm10GRCm38
MGSCv371062,562,904 - 62,563,353 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361062,495,513 - 62,495,962 (+)NCBIMGSCv36mm8
Celera1064,200,808 - 64,201,424 (+)NCBICelera
Cytogenetic Map10B4NCBI
cM Map1032.54NCBI
Atoh7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82025,529,528 - 25,529,977 (-)NCBIGRCr8
mRatBN7.22025,530,826 - 25,531,275 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2025,530,826 - 25,531,275 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2026,223,655 - 26,224,104 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02025,576,679 - 25,577,128 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02026,163,308 - 26,163,757 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02027,082,961 - 27,083,410 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2027,082,961 - 27,083,410 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02028,923,499 - 28,923,948 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42025,448,296 - 25,448,745 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12025,462,095 - 25,462,545 (+)NCBI
Celera2026,826,801 - 26,827,250 (-)NCBICelera
Cytogenetic Map20p11NCBI
Atoh7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495542520,559,466 - 20,560,275 (-)NCBIChiLan1.0ChiLan1.0
ATOH7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2880,393,599 - 80,395,396 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11080,398,922 - 80,400,717 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01064,714,546 - 64,716,341 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11067,025,107 - 67,026,148 (-)NCBIpanpan1.1PanPan1.1panPan2
ATOH7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1419,466,476 - 19,479,279 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl419,478,694 - 19,479,152 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha419,597,398 - 19,611,478 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0419,734,560 - 19,748,678 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl419,748,220 - 19,748,678 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1419,617,322 - 19,631,402 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0419,839,420 - 19,853,518 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0420,182,700 - 20,196,804 (-)NCBIUU_Cfam_GSD_1.0
Atoh7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721361,545,616 - 61,546,620 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493652110,038,765 - 10,039,223 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493652110,038,345 - 10,039,345 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATOH7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1963,155,182 - 63,158,935 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl963,157,638 - 63,158,096 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604823,925,365 - 23,927,147 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atoh7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247542,605,173 - 2,650,354 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247542,606,689 - 2,610,231 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATOH7
42 total Variants

Expression

RNA-SEQ Expression

ectoderm
nervous system
5 5

Sequence


Ensembl Acc Id: ENSSSCT00000023617   ⟹   ENSSSCP00000023438
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1471,400,980 - 71,401,447 (-)Ensembl
RefSeq Acc Id: XM_005671039   ⟹   XP_005671096
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11471,398,939 - 71,402,479 (-)NCBI
Sequence:
RefSeq Acc Id: XP_005671096   ⟸   XM_005671039
- UniProtKB: I3LH93 (UniProtKB/TrEMBL),   A0A4X1TLW1 (UniProtKB/TrEMBL),   A0A8D1RS11 (UniProtKB/TrEMBL),   A0A8D1M7S1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000023438   ⟸   ENSSSCT00000023617
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000021995 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005010630 UniProtKB/TrEMBL
  ENSSSCG00015043235 UniProtKB/TrEMBL
  ENSSSCG00025077659 UniProtKB/TrEMBL
  ENSSSCG00030024022 UniProtKB/TrEMBL
  ENSSSCG00035025707 UniProtKB/TrEMBL
  ENSSSCG00040023217 UniProtKB/TrEMBL
  ENSSSCG00045020139 UniProtKB/TrEMBL
  ENSSSCG00050034202 UniProtKB/TrEMBL
  ENSSSCG00055026416 UniProtKB/TrEMBL
  ENSSSCG00065071912 UniProtKB/TrEMBL
  ENSSSCG00070010631 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000023617 ENTREZGENE
  ENSSSCT00000023617.2 UniProtKB/TrEMBL
  ENSSSCT00005016362.1 UniProtKB/TrEMBL
  ENSSSCT00015057542.1 UniProtKB/TrEMBL
  ENSSSCT00025108077.1 UniProtKB/TrEMBL
  ENSSSCT00030033399.1 UniProtKB/TrEMBL
  ENSSSCT00035033851.1 UniProtKB/TrEMBL
  ENSSSCT00040031091.1 UniProtKB/TrEMBL
  ENSSSCT00045034321.1 UniProtKB/TrEMBL
  ENSSSCT00050045855.1 UniProtKB/TrEMBL
  ENSSSCT00055052218.1 UniProtKB/TrEMBL
  ENSSSCT00065098817.1 UniProtKB/TrEMBL
  ENSSSCT00070020609.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro Atoh7 UniProtKB/TrEMBL
  bHLH_dom UniProtKB/TrEMBL
  bHLH_transcription_factors UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report ssc:100624800 UniProtKB/TrEMBL
NCBI Gene ATOH7 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF99 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A4X1TLW1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1M7S1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1RS11 ENTREZGENE, UniProtKB/TrEMBL
  I3LH93 ENTREZGENE
UniProt Secondary I3LH93 UniProtKB/TrEMBL
VGNC ID VGNC:85632 ENTREZGENE