COIL (coilin) - Rat Genome Database

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Gene: COIL (coilin) Sus scrofa
Analyze
Symbol: COIL
Name: coilin
RGD ID: 14097287
Description: ENCODES a protein that exhibits disulfide oxidoreductase activity (ortholog); ASSOCIATED WITH hereditary breast ovarian cancer syndrome (ortholog); Joubert syndrome 1 (ortholog); FOUND IN female germ cell nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,234,437 - 33,254,342 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,231,842 - 33,254,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,038,175 - 34,061,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:30032202  


Genomics

Comparative Map Data
COIL
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1233,234,437 - 33,254,342 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11233,231,842 - 33,254,357 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21234,038,175 - 34,061,197 (+)NCBISscrofa10.2Sscrofa10.2susScr3
COIL
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381756,938,199 - 56,961,050 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1756,938,199 - 56,961,050 (-)EnsemblGRCh38hg38GRCh38
GRCh371755,015,560 - 55,038,411 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361752,370,559 - 52,393,410 (-)NCBINCBI36Build 36hg18NCBI36
Build 341752,370,561 - 52,393,410NCBI
Celera1751,477,125 - 51,499,976 (-)NCBICelera
Cytogenetic Map17q22NCBI
HuRef1750,376,180 - 50,399,432 (-)NCBIHuRef
CHM1_11755,080,769 - 55,103,619 (-)NCBICHM1_1
T2T-CHM13v2.01757,815,838 - 57,838,690 (-)NCBIT2T-CHM13v2.0
Coil
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391188,864,761 - 88,882,439 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1188,861,078 - 88,882,439 (+)EnsemblGRCm39 Ensembl
GRCm381188,973,935 - 88,991,613 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1188,970,252 - 88,991,613 (+)EnsemblGRCm38mm10GRCm38
MGSCv371188,835,249 - 88,852,927 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361188,790,040 - 88,807,703 (+)NCBIMGSCv36mm8
Celera1198,590,249 - 98,608,066 (+)NCBICelera
Cytogenetic Map11CNCBI
cM Map1154.34NCBI
Coil
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81074,286,279 - 74,307,597 (+)NCBIGRCr8
mRatBN7.21073,789,077 - 73,810,378 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1073,789,488 - 73,810,393 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1078,412,522 - 78,427,977 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01077,917,447 - 77,932,904 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01073,380,611 - 73,396,068 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01076,320,676 - 76,336,169 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1076,320,041 - 76,341,418 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01073,772,233 - 73,792,449 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41077,435,834 - 77,452,170 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11077,450,203 - 77,466,538 (+)NCBI
Celera1072,695,262 - 72,710,398 (+)NCBICelera
Cytogenetic Map10q26NCBI
Coil
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554515,884,233 - 5,898,525 (+)NCBIChiLan1.0ChiLan1.0
COIL
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21973,111,130 - 73,134,002 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11777,922,063 - 77,944,941 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01751,015,403 - 51,038,276 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11755,876,226 - 55,898,862 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1755,877,098 - 55,898,827 (-)Ensemblpanpan1.1panPan2
COIL
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1931,745,456 - 31,762,289 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl931,746,137 - 31,762,270 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha930,985,202 - 31,001,963 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0932,553,135 - 32,569,904 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl932,553,135 - 32,569,893 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1931,338,241 - 31,341,654 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0931,622,461 - 31,639,220 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0931,705,861 - 31,722,626 (-)NCBIUU_Cfam_GSD_1.0
Coil
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560231,106,367 - 31,124,937 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364905,950,034 - 5,962,095 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364905,950,215 - 5,968,772 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
COIL
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11636,450,064 - 36,473,294 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1636,450,102 - 36,469,493 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660777,269,233 - 7,292,676 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Coil
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462479511,994,541 - 12,006,912 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462479511,994,664 - 12,006,594 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in COIL
755 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000019175   ⟹   ENSSSCP00000018668
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1233,234,437 - 33,254,342 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000041196   ⟹   ENSSSCP00000056218
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1233,234,437 - 33,254,342 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000052693   ⟹   ENSSSCP00000040475
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1233,146,921 - 33,254,319 (-)Ensembl
RefSeq Acc Id: XM_003131625   ⟹   XP_003131673
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11233,231,842 - 33,254,357 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003131673   ⟸   XM_003131625
- UniProtKB: A0A8D0R5U0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000018668   ⟸   ENSSSCT00000019175
Ensembl Acc Id: ENSSSCP00000056218   ⟸   ENSSSCT00000041196
Ensembl Acc Id: ENSSSCP00000040475   ⟸   ENSSSCT00000052693
Protein Domains
Coilin N-terminal


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000017613 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025017391 UniProtKB/TrEMBL
  ENSSSCG00040014253 UniProtKB/TrEMBL
  ENSSSCG00045022757 UniProtKB/TrEMBL
  ENSSSCG00055016529 UniProtKB/TrEMBL
  ENSSSCG00060024402 UniProtKB/TrEMBL
  ENSSSCG00065032703 UniProtKB/TrEMBL
  ENSSSCG00070000878 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000019175 ENTREZGENE
  ENSSSCT00000019175.5 UniProtKB/TrEMBL
  ENSSSCT00000041196.3 UniProtKB/TrEMBL
  ENSSSCT00025023485.1 UniProtKB/TrEMBL
  ENSSSCT00025023523.1 UniProtKB/TrEMBL
  ENSSSCT00025023544.1 UniProtKB/TrEMBL
  ENSSSCT00040019032.1 UniProtKB/TrEMBL
  ENSSSCT00040019095.1 UniProtKB/TrEMBL
  ENSSSCT00040019111.1 UniProtKB/TrEMBL
  ENSSSCT00045038830.1 UniProtKB/TrEMBL
  ENSSSCT00045038922.1 UniProtKB/TrEMBL
  ENSSSCT00055032615.1 UniProtKB/TrEMBL
  ENSSSCT00055032737.1 UniProtKB/TrEMBL
  ENSSSCT00060033089.1 UniProtKB/TrEMBL
  ENSSSCT00060033091.1 UniProtKB/TrEMBL
  ENSSSCT00065044372.1 UniProtKB/TrEMBL
  ENSSSCT00065044377.1 UniProtKB/TrEMBL
  ENSSSCT00070001697.1 UniProtKB/TrEMBL
  ENSSSCT00070001711.1 UniProtKB/TrEMBL
InterPro Coilin UniProtKB/TrEMBL
  Coilin_N UniProtKB/TrEMBL
KEGG Report ssc:100525713 UniProtKB/TrEMBL
NCBI Gene COIL ENTREZGENE
PANTHER COILIN UniProtKB/TrEMBL
  PTHR15197 UniProtKB/TrEMBL
Pfam Coilin_N UniProtKB/TrEMBL
UniProt A0A287BIM0_PIG UniProtKB/TrEMBL
  A0A4X1SGQ0_PIG UniProtKB/TrEMBL
  A0A4X1SGQ9_PIG UniProtKB/TrEMBL
  A0A8D0R5U0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1I1E2_PIG UniProtKB/TrEMBL
  A0A8D1QXG4_PIG UniProtKB/TrEMBL
  F1RSD6_PIG UniProtKB/TrEMBL
VGNC ID VGNC:86860 ENTREZGENE