LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) - Rat Genome Database

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Advanced Search (OLGA)
Gene: LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Sus scrofa
Analyze
Symbol: LFNG
Name: LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase
RGD ID: 14096981
Description: ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (inferred); INVOLVED IN compartment pattern specification (ortholog); ovarian follicle development (ortholog); positive regulation of meiotic cell cycle (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH cervical cancer (ortholog); colon adenocarcinoma (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: beta-1,3-N-acetylglucosaminyltransferase lunatic fringe
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,810,892 - 1,820,048 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.131,721,044 - 1,819,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,208,304 - 2,267,857 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074  


Genomics

Comparative Map Data
LFNG
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl31,810,892 - 1,820,048 (+)EnsemblSscrofa11.1 EnsemblsusScr11Sscrofa11.1
Sscrofa11.131,721,044 - 1,819,426 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.232,208,304 - 2,267,857 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LFNG
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3872,512,529 - 2,529,177 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl72,512,529 - 2,529,177 (+)EnsemblGRCh38.p14 Ensemblhg38GRCh38
GRCh3772,552,163 - 2,568,811 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3672,526,005 - 2,535,337 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3472,330,737 - 2,341,302NCBI
Celera72,521,470 - 2,538,114 (+)NCBICelera
Cytogenetic Map7p22.3NCBI
HuRef72,469,979 - 2,486,577 (+)NCBIHuRef
CHM1_172,551,728 - 2,568,392 (+)NCBICHM1_1
T2T-CHM13v2.072,625,971 - 2,642,596 (+)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v272,600,032 - 2,616,654 (+)NCBI
Lfng
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395140,593,096 - 140,601,300 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5140,593,075 - 140,601,300 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385140,607,341 - 140,615,545 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5140,607,320 - 140,615,545 (+)EnsemblGRCm38.p6 Ensemblmm10GRCm38
MGSCv375141,083,295 - 141,091,499 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365140,859,841 - 140,866,960 (+)NCBIMGSCv36mm8
Celera5137,667,846 - 137,675,959 (+)NCBICelera
Cytogenetic Map5G2NCBI
cM Map579.15NCBI
Lfng
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81219,144,474 - 19,152,951 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1219,124,662 - 19,152,918 (-)EnsemblGRCr8
mRatBN7.21214,030,551 - 14,038,996 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1214,018,333 - 14,039,008 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1214,839,113 - 14,847,134 (-)NCBIUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01215,462,384 - 15,470,633 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01214,489,324 - 14,497,345 (-)NCBIUTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd1220,619,618 - 20,627,638 (-)NCBI
Lyon_Normotensive1220,544,718 - 20,552,738 (-)NCBI
Lyon_Hypertensive1219,404,671 - 19,412,692 (-)NCBI
F344_StmMcwi1229,993,126 - 30,001,144 (-)NCBI
Rnor_6.01216,117,767 - 16,126,211 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1216,118,634 - 16,126,953 (-)EnsemblRnor_6.0 Ensemblrn6Rnor6.0
Rnor_5.01218,113,805 - 18,123,172 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41214,497,704 - 14,505,723 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1215,790,243 - 15,798,262 (-)NCBICelera
RGSC_v3.11214,527,632 - 14,535,651 (-)NCBI
Cytogenetic Map12q11NCBI
Lfng
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546012,773,975 - 12,784,512 (-)EnsemblChiLan1.0 Ensembl
ChiLan1.0NW_00495546012,773,975 - 12,784,512 (-)NCBIChiLan1.0ChiLan1.0
LFNG
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v267,477,996 - 7,487,441 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1755,802,701 - 55,812,142 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v072,781,493 - 2,790,936 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.172,876,721 - 2,884,926 (+)NCBIPanPan1.1PanPan1.1panPan2
LFNG
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1614,631,638 - 14,640,147 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl614,632,691 - 14,635,485 (-)EnsemblCanFam3.1 EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha616,094,444 - 16,103,246 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0614,757,824 - 14,766,634 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl614,757,836 - 14,766,900 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1614,561,780 - 14,570,581 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0614,490,186 - 14,498,963 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0614,776,050 - 14,784,860 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lfng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mIctTri1.hap110105,493,223 - 105,501,228 (+)NCBImIctTri1.hap1
HiC_Itri_2NW_024409344142,760,468 - 142,768,231 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936823283,205 - 290,986 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936823283,207 - 290,970 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LFNG
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mChlSab1.0.hap12819,140,037 - 19,149,026 (-)NCBImChlSab1.0.hap1
Vero_WHO_p1.0NW_0236660902,679,194 - 2,686,982 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
ChlSab1.12819,084,527 - 19,092,305 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Lfng
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474030,392,342 - 30,404,003 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
HetGla_female_1.0 EnsemblNW_00462474030,392,079 - 30,404,068 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
Lfng
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11612,589,628 - 12,598,066 (-)NCBIRrattus_CSIRO_v1Rrattus_CSIRO_v1

Variants

.
Variants in LFNG
5016 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000008308   ⟹   ENSSSCP00000008089
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl31,810,892 - 1,819,422 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000074192   ⟹   ENSSSCP00000062257
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl31,810,892 - 1,820,048 (+)Ensembl
RefSeq Acc Id: XM_021085994   ⟹   XP_020941653
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,759,987 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085995   ⟹   XP_020941654
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,721,050 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085997   ⟹   XP_020941656
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,721,044 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085998   ⟹   XP_020941657
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,721,050 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021085999   ⟹   XP_020941658
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,800,919 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086000   ⟹   XP_020941659
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,721,076 - 1,819,426 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021086001   ⟹   XP_020941660
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.131,788,698 - 1,819,426 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020941660 (Get FASTA)   NCBI Sequence Viewer  
  XP_084872518 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000008089.2
  ENSSSCP00000062257.1
RefSeq Acc Id: XP_020941656   ⟸   XM_021085997
- Sequence:
RefSeq Acc Id: XP_020941654   ⟸   XM_021085995
- Sequence:
RefSeq Acc Id: XP_020941657   ⟸   XM_021085998
- Sequence:
RefSeq Acc Id: XP_020941659   ⟸   XM_021086000
- Sequence:
RefSeq Acc Id: XP_020941653   ⟸   XM_021085994
- Sequence:
RefSeq Acc Id: XP_020941660   ⟸   XM_021086001
- UniProtKB: F1RI57 (UniProtKB/TrEMBL),   A0A5G2QJN1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020941658   ⟸   XM_021085999
- Sequence:
Ensembl Acc Id: ENSSSCP00000062257   ⟸   ENSSSCT00000074192
Ensembl Acc Id: ENSSSCP00000008089   ⟸   ENSSSCT00000008308
Protein Domains
Fringe-like glycosyltransferase


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007572 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008308.3 UniProtKB/TrEMBL
  ENSSSCT00000074192.1 UniProtKB/TrEMBL
Gene3D-CATH 3.90.550.50 UniProtKB/TrEMBL
InterPro Fringe UniProtKB/TrEMBL
  Fringe-like UniProtKB/TrEMBL
KEGG Report ssc:100524978 UniProtKB/TrEMBL
NCBI Gene LFNG ENTREZGENE
PANTHER FRINGE-RELATED UniProtKB/TrEMBL
Pfam Fringe UniProtKB/TrEMBL
PIRSF B-acetylgalactosaminyltfrase UniProtKB/TrEMBL
PROSITE PROKAR_LIPOPROTEIN UniProtKB/TrEMBL
UniProt A0A5G2QJN1 ENTREZGENE, UniProtKB/TrEMBL
  F1RI57 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:89690 ENTREZGENE