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Gene: LFNG (LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase) Canis lupus familiaris

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Symbol:

LFNG

Name:

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

RGD ID:

12141029

Description:

ENCODES a protein that exhibits glycosyltransferase activity (inferred); metal ion binding (inferred); O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (inferred); INVOLVED IN compartment pattern specification (ortholog); ovarian follicle development (ortholog); positive regulation of meiotic cell cycle (ortholog); PARTICIPATES IN Notch signaling pathway; ASSOCIATED WITH cervical cancer (ortholog); colon adenocarcinoma (ortholog); genetic disease (ortholog); FOUND IN Golgi apparatus (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

beta-1,3-N-acetylglucosaminyltransferase lunatic fringe

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

CanFam3.1 - Dog CanFam3.1 Assembly

Position:

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	14,631,638 - 14,640,147 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	14,632,691 - 14,635,485 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	16,094,444 - 16,103,246 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	14,757,824 - 14,766,634 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	14,757,836 - 14,766,900 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	14,561,780 - 14,570,581 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	14,490,186 - 14,498,963 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	14,776,050 - 14,784,860 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

cervical cancer (ISO)

colon adenocarcinoma (ISO)

genetic disease (ISO)

lung cancer (ISO)

melanoma (ISO)

ovarian serous cystadenocarcinoma (ISO)

spondylocostal dysostosis 3 (ISO)

Spondylocostal Dysostosis, Autosomal Recessive (ISO)

stomach cancer (ISO)

urinary bladder cancer (ISO)

uterine corpus endometrial carcinoma (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

compartment pattern specification (ISO)

marginal zone B cell differentiation (IEA)

negative regulation of Notch signaling pathway (IEA)

ovarian follicle development (ISO)

pattern specification process (IEA)

positive regulation of meiotic cell cycle (ISO)

positive regulation of Notch signaling pathway (ISO)

regulation of Notch signaling pathway (IBA,IEA)

regulation of somitogenesis (ISO)

somitogenesis (ISO)

T cell differentiation (IEA)

Cellular Component

Golgi apparatus (ISO)

Golgi membrane (IEA)

membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

metal ion binding (IEA)

O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase activity (IBA,IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

Notch signaling pathway (ISO)

References

Additional References at PubMed

PMID:22301074	PMID:30032202

Genomics

Comparative Map Data

LFNG
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	6	14,631,638 - 14,640,147 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	6	14,632,691 - 14,635,485 (-)	Ensembl		CanFam3.1 Ensembl	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	6	16,094,444 - 16,103,246 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	6	14,757,824 - 14,766,634 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	6	14,757,836 - 14,766,900 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	6	14,561,780 - 14,570,581 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	6	14,490,186 - 14,498,963 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	6	14,776,050 - 14,784,860 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LFNG
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	2,512,529 - 2,529,177 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	2,512,529 - 2,529,177 (+)	Ensembl		GRCh38.p14 Ensembl	hg38	GRCh38
GRCh37	7	2,552,163 - 2,568,811 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	2,526,005 - 2,535,337 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	7	2,330,737 - 2,341,302	NCBI
Celera	7	2,521,470 - 2,538,114 (+)	NCBI		Celera
Cytogenetic Map	7	p22.3	NCBI
HuRef	7	2,469,979 - 2,486,577 (+)	NCBI		HuRef
CHM1_1	7	2,551,728 - 2,568,392 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	2,625,971 - 2,642,596 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	2,600,032 - 2,616,654 (+)	NCBI

Lfng
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	140,593,096 - 140,601,300 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	140,593,075 - 140,601,300 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	5	140,607,341 - 140,615,545 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	140,607,320 - 140,615,545 (+)	Ensembl		GRCm38.p6 Ensembl	mm10	GRCm38
MGSCv37	5	141,083,295 - 141,091,499 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	5	140,859,841 - 140,866,960 (+)	NCBI		MGSCv36	mm8
Celera	5	137,667,846 - 137,675,959 (+)	NCBI		Celera
Cytogenetic Map	5	G2	NCBI
cM Map	5	79.15	NCBI

Lfng
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	12	19,144,474 - 19,152,951 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	12	19,124,662 - 19,152,918 (-)	Ensembl				GRCr8
mRatBN7.2	12	14,030,551 - 14,038,996 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	12	14,018,333 - 14,039,008 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	12	14,839,113 - 14,847,134 (-)	NCBI	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	12	15,462,384 - 15,470,633 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	12	14,489,324 - 14,497,345 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0
Dahl_SR_JrHsd	12	20,619,618 - 20,627,638 (-)	NCBI
Lyon_Normotensive	12	20,544,718 - 20,552,738 (-)	NCBI
Lyon_Hypertensive	12	19,404,671 - 19,412,692 (-)	NCBI
F344_StmMcwi	12	29,993,126 - 30,001,144 (-)	NCBI
Rnor_6.0	12	16,117,767 - 16,126,211 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	12	16,118,634 - 16,126,953 (-)	Ensembl		Rnor_6.0 Ensembl	rn6	Rnor6.0
Rnor_5.0	12	18,113,805 - 18,123,172 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	12	14,497,704 - 14,505,723 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	12	15,790,243 - 15,798,262 (-)	NCBI		Celera
RGSC_v3.1	12	14,527,632 - 14,535,651 (-)	NCBI
Cytogenetic Map	12	q11	NCBI

Lfng
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955460	12,773,975 - 12,784,512 (-)	Ensembl		ChiLan1.0 Ensembl
ChiLan1.0	NW_004955460	12,773,975 - 12,784,512 (-)	NCBI	ChiLan1.0	ChiLan1.0

LFNG
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	7,477,996 - 7,487,441 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	55,802,701 - 55,812,142 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	2,781,493 - 2,790,936 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	2,876,721 - 2,884,926 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2

Lfng
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mIctTri1.hap1	10	105,493,223 - 105,501,228 (+)	NCBI		mIctTri1.hap1
HiC_Itri_2	NW_024409344	142,760,468 - 142,768,231 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936823	283,205 - 290,986 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936823	283,207 - 290,970 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LFNG
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	1,810,892 - 1,820,048 (+)	Ensembl		Sscrofa11.1 Ensembl	susScr11	Sscrofa11.1
Sscrofa11.1	3	1,721,044 - 1,819,426 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	2,208,304 - 2,267,857 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LFNG
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mChlSab1.0.hap1	28	19,140,037 - 19,149,026 (-)	NCBI		mChlSab1.0.hap1
Vero_WHO_p1.0	NW_023666090	2,679,194 - 2,686,982 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0
ChlSab1.1	28	19,084,527 - 19,092,305 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2

Lfng
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624740	30,392,342 - 30,404,003 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2
HetGla_female_1.0 Ensembl	NW_004624740	30,392,079 - 30,404,068 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl

Lfng
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	16	12,589,628 - 12,598,066 (-)	NCBI	Rrattus_CSIRO_v1	Rrattus_CSIRO_v1

Variants

Variants in LFNG
133 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

adipose tissue	alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	reproductive system	respiratory system
6	5	5	23	22	16	6	6	6	6	33	22	12	14	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_038478364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038539620	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038603703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_038668420	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_547009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AAEX04000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAHUQ010000069	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAQRD010000090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAAUVH010000065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	REHQ01000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSCAFT00000025998 ⟹ ENSCAFP00000024136

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1 Ensembl	6	14,632,691 - 14,635,485 (-)	Ensembl

Ensembl Acc Id:

ENSCAFT00845011155 ⟹ ENSCAFP00845008698

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0 Ensembl	6	14,757,836 - 14,766,900 (-)	Ensembl

RefSeq Acc Id:

XM_038478364 ⟹ XP_038334292

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UMICH_Zoey_3.1	6	14,561,780 - 14,570,581 (-)	NCBI

RefSeq Acc Id:

XM_038539620 ⟹ XP_038395548

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UU_Cfam_GSD_1.0	6	14,776,050 - 14,784,860 (-)	NCBI

RefSeq Acc Id:

XM_038603703 ⟹ XP_038459631

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
UNSW_CanFamBas_1.0	6	14,490,186 - 14,498,963 (-)	NCBI

RefSeq Acc Id:

XM_038668420 ⟹ XP_038524348

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
ROS_Cfam_1.0	6	14,757,824 - 14,766,634 (-)	NCBI

RefSeq Acc Id:

XM_547009 ⟹ XP_547009

Type:

CODING

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	14,631,638 - 14,640,147 (-)	NCBI
Dog10K_Boxer_Tasha	6	16,094,444 - 16,103,246 (-)	NCBI

Sequence:

show sequence

GCGCCACAAGGAGATGACGTTCATTTTCACCGACGGGGAAGATGAAGCCCTGGCCAGGCGCACG
GGCAACGTGGTCAACACCAACTGCTCGGCTGCCCACAGCCGCCAGGCCCTGTCCTGCAAGATGG
CCGTGGAGTATGACCACTTCATTGAATCGGGGAGGAAGTGGTTCTGTCATGTGGACGATGACAA
CTATGTCAACGTCAGGGCTTTGCTGCGACTGCTGGCCAGCTACCCGCACACGCAGGATGTGTAC
ATCGGCAAGCCCAGTCTGGACAGGCCCATCCAGGCCACAGAGAGGGTCAGCGAGAACAAGGTGC
GCCCTGTCCACTTCTGGTTTGCCACCGGCGGGGCTGGCTTCTGCATCAGCCGTGGGCTGGCCCT
GAAGATGAGCCCGTGGGCCAGCAGGGGCCACTTCATGAGCACGGCCGAGCGGATCCGCCTGCCG
GATGACTGCACCGTAGGCTACATCGTGGAGGCCCTGCTGGGTGTGCCCCTCATCCGCAGCGGCC
TCTTTCACTCCCACCTGGAGAACCTGCAGCAGGTGCCAGCATCGGAGCTCCGGGAGCAGGTGAC
CCTCAGCTATGGCATGTTCGAGAACAAGCGGAATGCCATCCACATGAAGGGGCCCTTCTCAGTG
GAGGCTGACCCGTCCAGGTTCCGCTCCATCCACTGCCACCTGTACCCGGACACACCCTGGTGTC
CCCGCACCACCGTCTTCTAGCAGCCGTGGTTGAGACCCCGTCCTCGGGCGCCCCTGGTATCCAA
AGGGCCCGGGGACCTGTGTTGTGCCGCCCTGGCCTTGGCATTCGAGGCTCCCTCAGGGCCGTGC
CTGCGTGTGTGTGCTCTGTGCCTGTGTGCAGCAGGCTGCTGGGCAGTTCTGCTCTGCCAAGGAA
CAGGCCAAAGTGCCACTTGTCTGCCTTTCCATGCCCCGTGGGTCAGCAGGCTCTGGTGCCCCAT
CCCAGGATGTGAGTCAGAGGTCACTGTGGGCCTTTTTATTATTTTGGGGTCTTTCGACAGCATG
AGGACCAGGGGCTGCTCTGCAGGGATATGCAGGTGCCTCTCCCTTCCTGTCGGGTGCAGGCTCT
GTGCCAGGGGGGCCCTGCCTCCGAGCCCCTTTTCCCACACACTGCGCTCAGAGGAACAGCAGCC
AGCACCTGGGCGCAGCCACCCCATGAAGCCCCTTGCGACCATGTGGCCAGGTGAATAGCAGCTC
CCCTCCCAACCATCCTGGGTGGGGTGTCTTTCCAGTCCTTGCGGAGGTCTTCTCTTTGTCTCCC
CATGATGGGAAGACAGAGCTGAGCATATTATCTCCTCTCTGAAGTAGAGAGAAAGTCGCCCATA
ATGGGCGTGTCTGTAAATATTGTGACAGTATTTTTTTACTGTGCTTGTTTCTCATAAGGGGGTG
GGTAAAAGGTAAGGTGTTCTTGTTTTGGGGGGTGGGTGGGGCGGGTGTTATTTTATCTTTTCTG
TGGATCAGAAAAAGCAGAAGCCAAAATTGAGATGATCTTTGTTGTTCAAGCTGATGGAAATGTC
TACTGCTCCATATATTTATATGTCCCAGCATCTGGACCACCCTTGCCCCCTCCTGTACCGTACC
TGTCCCCCGCAGGCCCAGCTTGGCACACCTGGCCCGTGGGGTGTGTTTTGTCTTCTGTTTTTCT
TTCTGCAAAGACATAGCTAGGAAAGCCACCGATAATGGAAAAGTTCTCAGGGAATTGAAGTGTG
GTTACTATGGTGACGTCCTTTGCTGTGAATAAAGTGCTCTTTGGGGCAA

hide sequence

Protein Sequences


Protein RefSeqs	XP_038334292	(Get FASTA)	NCBI Sequence Viewer
	XP_038395548	(Get FASTA)	NCBI Sequence Viewer
	XP_038459631	(Get FASTA)	NCBI Sequence Viewer
	XP_038524348	(Get FASTA)	NCBI Sequence Viewer
	XP_547009	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSCAFP00845008698
	ENSCAFP00845008698.1

RefSeq Acc Id:

XP_547009 ⟸ XM_547009

- UniProtKB:

A0A8C0R4Y6 (UniProtKB/TrEMBL), A0A8I3N2B1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MTFIFTDGEDEALARRTGNVVNTNCSAAHSRQALSCKMAVEYDHFIESGRKWFCHVDDDNYVNV
RALLRLLASYPHTQDVYIGKPSLDRPIQATERVSENKVRPVHFWFATGGAGFCISRGLALKMSP
WASRGHFMSTAERIRLPDDCTVGYIVEALLGVPLIRSGLFHSHLENLQQVPASELREQVTLSYG
MFENKRNAIHMKGPFSVEADPSRFRSIHCHLYPDTPWCPRTTVF

hide sequence

Ensembl Acc Id:

ENSCAFP00000024136 ⟸ ENSCAFT00000025998

RefSeq Acc Id:

XP_038334292 ⟸ XM_038478364

RefSeq Acc Id:

XP_038459631 ⟸ XM_038603703

RefSeq Acc Id:	XP_038524348 ⟸ XM_038668420
- UniProtKB:	A0A8C0R4Y6 (UniProtKB/TrEMBL), A0A8I3N2B1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038395548 ⟸ XM_038539620
- UniProtKB:	A0A8C0R4Y6 (UniProtKB/TrEMBL), A0A8I3N2B1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSCAFP00845008698 ⟸ ENSCAFT00845011155

Protein Domains

Fringe-like glycosyltransferase

Promoters

RGD ID:

13683580

Promoter ID:

EPDNEW_C1648

Type:

single initiation site

Name:

LFNG_1

Description:

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C1649

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	14,634,963 - 14,635,023	EPDNEW

RGD ID:

13683583

Promoter ID:

EPDNEW_C1649

Type:

single initiation site

Name:

LFNG_2

Description:

LFNG O-fucosylpeptide 3-beta-N-acetylglucosaminyltransferase

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Alternative Promoters:

null; see alsoEPDNEW_C1648

Experiment Methods:

Single-end sequencing.

Position:

Dog Assembly	Chr	Position (strand)	Source
CanFam3.1	6	14,640,118 - 14,640,178	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSCAFG00000016399	Ensembl
	ENSCAFG00845006270	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSCAFT00845011155	ENTREZGENE
	ENSCAFT00845011155.1	UniProtKB/TrEMBL
Gene3D-CATH	3.90.550.50	UniProtKB/TrEMBL
InterPro	Fringe	UniProtKB/TrEMBL
	Fringe-like	UniProtKB/TrEMBL
KEGG Report	cfa:489891	UniProtKB/TrEMBL
NCBI Gene	LFNG	ENTREZGENE
PANTHER	FRINGE-RELATED	UniProtKB/TrEMBL
Pfam	Fringe	UniProtKB/TrEMBL
PIRSF	B-acetylgalactosaminyltfrase	UniProtKB/TrEMBL
PROSITE	PROKAR_LIPOPROTEIN	UniProtKB/TrEMBL
UniProt	A0A8C0R4Y6	ENTREZGENE
	A0A8I3N2B1	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:42645	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

RGD Manual Annotations