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Gene: CD200R1 (CD200 receptor 1) Sus scrofa

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Symbol:

CD200R1

Name:

CD200 receptor 1

RGD ID:

14096420

Description:

ENCODES a protein that exhibits signaling receptor activity (inferred); INVOLVED IN regulation of neuroinflammatory response (inferred); ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN plasma membrane (ortholog); receptor complex (ortholog)

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cell surface glycoprotein CD200 receptor 1; cell surface glycoprotein receptor CD200

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	146,953,149 - 146,995,323 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	146,953,135 - 146,994,325 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	156,554,561 - 156,593,722 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of neuroinflammatory response (IEA)

Cellular Component

cell surface (IEA)

membrane (IEA)

plasma membrane (ISO)

receptor complex (ISO)

Molecular Function

protein binding (ISO)

signaling receptor activity (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:30032202

Genomics

Comparative Map Data

CD200R1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	146,953,149 - 146,995,323 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	13	146,953,135 - 146,994,325 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	156,554,561 - 156,593,722 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CD200R1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	112,921,205 - 112,975,103 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	112,921,205 - 112,975,103 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	3	112,640,052 - 112,693,950 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	114,124,222 - 114,176,627 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	3	111,049,870 - 111,102,275 (-)	NCBI		Celera
Cytogenetic Map	3	q13.2	NCBI
HuRef	3	110,025,071 - 110,077,471 (-)	NCBI		HuRef
CHM1_1	3	112,605,064 - 112,657,469 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	115,642,153 - 115,696,046 (-)	NCBI		T2T-CHM13v2.0

Cd200r1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	16	44,586,141 - 44,615,341 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	16	44,586,099 - 44,615,341 (+)	Ensembl		GRCm39 Ensembl
GRCm38	16	44,765,736 - 44,794,977 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	16	44,765,736 - 44,794,978 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	16	44,765,849 - 44,795,090 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	16	44,685,124 - 44,714,310 (+)	NCBI		MGSCv36	mm8
Celera	16	45,131,563 - 45,160,813 (+)	NCBI		Celera
Cytogenetic Map	16	B4	NCBI
cM Map	16	29.08	NCBI

Cd200r1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	11	69,392,943 - 69,427,213 (-)	NCBI		GRCr8
mRatBN7.2	11	55,886,937 - 55,921,217 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	11	55,887,717 - 55,921,285 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	11	64,701,896 - 64,734,611 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	11	57,363,755 - 57,396,462 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	11	56,434,097 - 56,466,769 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	11	60,848,161 - 60,882,470 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	11	60,848,131 - 60,882,379 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	11	64,962,558 - 64,994,987 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	11	57,427,237 - 57,459,716 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	11	57,484,825 - 57,517,305 (-)	NCBI
Celera	11	55,452,759 - 55,484,520 (-)	NCBI		Celera
Cytogenetic Map	11	q21	NCBI

Cd200r1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955427	13,143,695 - 13,148,743 (-)	NCBI	ChiLan1.0	ChiLan1.0

LOC487977
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	33	17,332,986 - 17,357,301 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	33	17,436,279 - 17,460,591 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	33	17,577,294 - 17,601,611 (-)	NCBI		ROS_Cfam_1.0
UMICH_Zoey_3.1	33	17,381,692 - 17,406,001 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	33	17,429,158 - 17,453,448 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	33	17,978,760 - 18,003,078 (-)	NCBI		UU_Cfam_GSD_1.0

LOC103228312
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	67,862,368 - 67,902,875 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	67,862,783 - 67,901,872 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666041	98,576,511 - 98,618,733 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in CD200R1
558 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	5	3	2	5	14	12	5	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001243546	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230545	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK230725	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391383	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK391406	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01032349	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000013049 ⟹ ENSSSCP00000012706

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	146,953,369 - 146,994,302 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000032815 ⟹ ENSSSCP00000028917

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	146,953,149 - 146,995,323 (+)	Ensembl

Ensembl Acc Id:

ENSSSCT00000069428 ⟹ ENSSSCP00000071746

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	13	146,953,149 - 146,995,337 (+)	Ensembl

RefSeq Acc Id:

NM_001243546 ⟹ NP_001230475

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	13	146,953,135 - 146,994,325 (+)	NCBI

Sequence:

show sequence

CTGTGTCAAGTTCCAGAGAAGAGTTTCTTCTGTTCCAAGTTACTAATCAGGCTGAAACACATAG
AATTGAAGGAAGGGGGTAGGAGGAAAAGAGTATCATGTTGCTAATGGGCTAAGAGGATCCAGCA
CTTCCTGGAGAAGTCGACCAAAGAAAGCCTCACCATGTCCATAGCTCTTTTTACACCTGTGTGG
AGGAACAGTGTTGAGTGAAGGTCAGAAAATAAGAAAACAGAAATGCCCTGCACTTGGGTAACTT
CTGATCTTCAGCTACTACTGAGTTTGACTCTCTTCTTAGTTGCTGGACGTTCAAGTGCAGGAAC
GGAAGGTCCTTTTACATCAAACAACTCAATAATGCCACAGATTCACCAGGACAAATACAGTTTG
GCTTCAACAATTACTTCATCTACATACAGAAAACAGAGCACTGTAACACCTCTTGCGGAAGTTA
ATATTTCACTACCTGTACTGGTGGATACAACGGCTGAGCTCTATTGCCCTCCTGTGCTGTGGAC
AACTGTGGTGGTAGCAACATGGGAAATAGTCCTCAGAGACAAGGCCCCCTGCTTCAGAGCCTAC
AGGGCTGATACAAATGAGACCACATCAGGAAACTGTACTGATGAGAGAATAATCTGGTCCTCCA
GACTTGACCAGAATCCTGCCCTTCAGATTGGTCCAGTGGCCATCACTCATGATGGGTATTACAG
GTGTCAAAAGGTAGCACCAAATGGGAATTTCCATCGTGGCTATCACCTCCAAGTATTAGTACCC
CCTGAGGTGGCCCTGGTTCAAAGCGAGAATGGAACTGTGGTGTGCAAGGCGGTCGCAGGGAAGC
CGGCTGCTCAGATTTCCTGGACCCCTGAGGGGGACTGTGTCACTGAGCAAAACCCTCACGGGGG
CAATGGCACAGTGACTGTCTGGAGTATGTGCTACTGGAAGGCCCGTCATGTACCTAATGTGTCC
TGCACTGTCTCCCACGTGACTGGCAACAAGAGTCTCTTCTTAGAGCTGAATCAAGTTGATAATT
ACAAAAGAATGTACTTAAGAATTCTATATATCATCCCTCCTATTTTTATTATCTTGGTCATCGT
GGGATCCATTTGGCTTTTGAAAATCCTTGGCTGCAGAAAATGTAAATTGAAAAAAACAGAACCT
ACTCCAGTTGTCGAGGAGGATGAAATGCAGCCCTATGCCAGCTACACGGAGAAGAATAATCCAC
TTTACGATACCACAAACAGAGTGAAGACATCTCAGGTGTTAAATGAAGTTGATGGGATAAATCT
CCATACTATATATGTTTTTGGCATCTCCCACGAGGACAAATGAATCAAGATACAGTATGGATCC
TGTTTTGATTTTCTTAGAGTTCTAGAATGGAAGGTCTATTTGGAAACAAGTTTTTCAAAGATTC
TTAGAAGACAGAGACATTCTAGAGGATTTTCATTCATTTCCTTATACGATTGAAATTTTAGAAT
TTTAGCTGTTACTACCCAGTCCTGTGAAAAATGGATATTATTACAAAGATAGCACATACTCATG
ATGAAATATTCAAATTGTTCAGTACAGTAGATGATGAAAACGGAGTTACTTCAAATAACTCTGC
AGAAGGAACAATTACCAACACTTTTTTTTATAATTTTCTAGAAAATTCTTATGTGCCTATGTCA
TATCTGTATGTGCATAGTATATGTATACATTCATACACATATCCTTGTCAAGACACAAATAGGA
ACATACTGTAATTCTGTACTTACAGAAAGCTAATATATCTTGGAGATCTTTTATATGAATACAA
GCAGAGCTACCTCATTTTTCTTAATGGTTACATAAAATTCCATTGTGTGTAATGGAATTTAACT
TAATTAACCAAAACCCTAGTGGTGGACATTTGGTTTAAGTTTCGTTTATTTTGCTGTTATAAAC
AATACTACATAGAATGTTTCTTGTGGATCTATCTCTTCGTATGTGCTTGGATATATTTGTAAGA
TAATTTCCTTGAGAGAAATTGCCAGGTCAAAGGGTTTGTGCATTTTTATTATTGATTTATATAT
CAAATTGTATCATTTATGTTCCCTCCAACCCTCTTTGAAGTGCTTTTCCTTTTATTTTAATATC
TGTAGGATGCCAACCTCATGTTAGCTAATATAAGATTATAATAAGAATTTAACTATTTAATAAA
ACTGAATTTATATTTTTCTTTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001230475	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000012706.4
	ENSSSCP00000028917
	ENSSSCP00000028917.2
	ENSSSCP00015013326.1
	ENSSSCP00025030153.1
	ENSSSCP00030034344.1
	ENSSSCP00035035128.1
	ENSSSCP00045037822.1
	ENSSSCP00055010327.1
	ENSSSCP00060004778.1
	ENSSSCP00065046243.1
	ENSSSCP00070006545.1

RefSeq Acc Id:	NP_001230475 ⟸ NM_001243546
- Peptide Label:	precursor
- UniProtKB:	A0A4X1SUJ9 (UniProtKB/TrEMBL), K7GM29 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPCTWVTSDLQLLLSLTLFLVAGRSSAGTEGPFTSNNSIMPQIHQDKYSLASTITSSTYRKQST VTPLAEVNISLPVLVDTTAELYCPPVLWTTVVVATWEIVLRDKAPCFRAYRADTNETTSGNCTD ERIIWSSRLDQNPALQIGPVAITHDGYYRCQKVAPNGNFHRGYHLQVLVPPEVALVQSENGTVV CKAVAGKPAAQISWTPEGDCVTEQNPHGGNGTVTVWSMCYWKARHVPNVSCTVSHVTGNKSLFL ELNQVDNYKRMYLRILYIIPPIFIILVIVGSIWLLKILGCRKCKLKKTEPTPVVEEDEMQPYAS YTEKNNPLYDTTNRVKTSQVLNEVDGINLHTIYVFGISHEDK hide sequence

Ensembl Acc Id:

ENSSSCP00000071746 ⟸ ENSSSCT00000069428

Ensembl Acc Id:

ENSSSCP00000012706 ⟸ ENSSSCT00000013049

Ensembl Acc Id:

ENSSSCP00000028917 ⟸ ENSSSCT00000032815

Protein Domains

Ig-like

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011925	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015025123	UniProtKB/TrEMBL
	ENSSSCG00025050884	UniProtKB/TrEMBL
	ENSSSCG00030053859	UniProtKB/TrEMBL
	ENSSSCG00035062804	UniProtKB/TrEMBL
	ENSSSCG00045031669	UniProtKB/TrEMBL
	ENSSSCG00055006798	UniProtKB/TrEMBL
	ENSSSCG00060009770	UniProtKB/TrEMBL
	ENSSSCG00065075606	UniProtKB/TrEMBL
	ENSSSCG00070004213	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000013049.5	UniProtKB/TrEMBL
	ENSSSCT00000032815	ENTREZGENE
	ENSSSCT00000032815.4	UniProtKB/TrEMBL
	ENSSSCT00015033522.1	UniProtKB/TrEMBL
	ENSSSCT00025069919.1	UniProtKB/TrEMBL
	ENSSSCT00030075125.1	UniProtKB/TrEMBL
	ENSSSCT00035084439.1	UniProtKB/TrEMBL
	ENSSSCT00045054317.1	UniProtKB/TrEMBL
	ENSSSCT00055013152.1	UniProtKB/TrEMBL
	ENSSSCT00060012646.1	UniProtKB/TrEMBL
	ENSSSCT00065104362.1	UniProtKB/TrEMBL
	ENSSSCT00070007954.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.40.10	UniProtKB/TrEMBL
InterPro	CD200R	UniProtKB/TrEMBL
	CD80_C2-set	UniProtKB/TrEMBL
	Ig-like_dom	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
NCBI Gene	CD200R1	ENTREZGENE
PANTHER	CELL SURFACE GLYCOPROTEIN CD200 RECEPTOR 1	UniProtKB/TrEMBL
	PTHR21462	UniProtKB/TrEMBL
Pfam	C2-set_2	UniProtKB/TrEMBL
PROSITE	IG_LIKE	UniProtKB/TrEMBL
Superfamily-SCOP	SSF48726	UniProtKB/TrEMBL
UniProt	A0A4X1SUJ9	ENTREZGENE, UniProtKB/TrEMBL
	F1SLU1_PIG	UniProtKB/TrEMBL
	K7GM29	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD