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Gene: LOC100520491 (killer cell lectin-like receptor subfamily B member 1B) Sus scrofa

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Symbol:

LOC100520491

Name:

killer cell lectin-like receptor subfamily B member 1B

RGD ID:

14057414

Description:

ENCODES a protein that exhibits carbohydrate binding (inferred); INVOLVED IN B cell adhesion (ortholog); positive regulation of interleukin-4 production (ortholog); positive regulation of T cell proliferation (ortholog); FOUND IN plasma membrane (ortholog)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

killer cell lectin-like receptor subfamily B member 1B allele B

RGD Orthologs

Human

Bonobo

Green Monkey

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	5	62,106,699 - 62,121,394 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	64,938,921 - 64,956,629 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

B cell adhesion (ISO)

positive regulation of interleukin-4 production (ISO)

positive regulation of T cell proliferation (ISO)

Cellular Component

membrane (IEA)

plasma membrane (IBA,ISO)

Molecular Function

carbohydrate binding (IEA)

References

Genomics

Comparative Map Data

LOC100520491
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	5	62,106,699 - 62,121,394 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	64,938,921 - 64,956,629 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CLECL1P
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	9,712,973 - 9,733,296 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	9,722,644 - 9,733,030 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	9,865,569 - 9,885,892 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	9,766,358 - 9,777,127 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	15,036,506 - 15,047,277 (-)	NCBI		Celera
Cytogenetic Map	12	p13.31	NCBI
HuRef	12	9,611,420 - 9,628,860 (-)	NCBI		HuRef
CHM1_1	12	9,837,411 - 9,854,860 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	12	9,599,172 - 9,619,492 (-)	NCBI		T2T-CHM13v2.0

CLECL1P
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	15,209,058 - 15,223,952 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	15,203,923 - 15,220,711 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	9,763,581 - 9,781,308 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	10,013,032 - 10,030,553 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	10,015,860 - 10,030,553 (-)	Ensembl	panpan1.1		panPan2

CLECL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	9,621,790 - 9,634,611 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666089	1,703,410 - 1,719,627 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in LOC100520491
364 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_003481689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01104492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

XM_003481689 ⟹ XP_003481737

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	62,106,699 - 62,121,394 (+)	NCBI

Sequence:

show sequence

TTCTCTAATGAGTTAGTGCACAGTGATAAGCAAAGAAAGTTCTCAAACATCTATTTTCCCTCTA
GAGTAAGGTTTAGTGTCTATCAATTCTTTCTATTCCACTCACAATAGTATCTCTCTCTCTTTTT
TTGTTGTTCTCTCCCTCAAATTGCCATTCTGCTTTGAAGAAAATACTAGAAGGTCATAGAGTTT
CTGCCGGAGAGCGTGTCTAAGAAAAAAGAGGAAGTGGTTCATAGTTAAGTAGAACAATATCTTC
TGTAATATCATTAAAGATTAAAATGATTCCAAACATAGGCGGAATACTAACTGTAGAGCAAAAA
ACTACGGCTTAAATAGTCCTTTTCTTCTATGACATGCAAGGGTTCAAAAATCTATTACCTTGAT
TAATAAGGCTGAACACATTGCTTTTGAGTGTTATTCATCGGAGAAACAAACCAAACTCGGGAGA
GGGGAAGAAAATCATCCTTATCAATTTATCTAACTTACAGGAAGTTTGCCAACATATGGGACTC
CCTTCAGCAGAATATCACTAGTGGGCTTCTCTCTCGTTTTAACATAGGCAATGGCTGGAGATAT
AGTCTATGCTGACATCAACATTGCCAGGACTCTTTCTTCGGAACATTCCTCTTCAGTACAGAGA
TCCGATTCTCACCACCATGGAATTTTCTTGAGAGTTGGATGTGCAATGATTGTCATTCTTCTTG
TAATAGTAATTGTGCTGAGCATTTTTGTTATCCAGTTCAAATCTGCAAGACATATTAAAGGGGA
TAATGAATCAAAGGAGAAAAACTGTGCCAGGCAAAATGAATCTGAAACACTCACCTCAACAGTT
TCTTCCAATTCTTCTACCACTCATAAACCATGCCCCTTCAAAGACTGGAAGCTACATGGGGGGA
AATGTTACTGGGTTGCAGAAAAAAAGAAATCTTGGAATGAAAGTAAAAATGACTGTGCCCAGAA
AGAGTCACATCTCATGGTGATCCGAGACTTCACTGATATGAGTTTCCTATGGCGGAACCTGAAT
ATATCGGAGTTTTATTGGGTTGGTTTGAACATTCCTTCTGGAGGGAAATCATGGACCTGGGTGG
ACAACAACACTTTTGACCCCCATCTGTTTTCAATAGAAGAAAATAAACCACGGACCCGGAGCAT
GAAATGTGCCAAGGTGTCTTATACTGAGATAGCTAAAGAAAATTGTGCAGAAAATAATCATTGG
ATTTGTCAACTGTAATCCACTGGGCAGAAAATTGGTCTATTTTTGTCTGACTGAGAGACACCAC
GTGAAGTTTGAGCTCCGGTCATAAGAAAGTTCAGAGAGTTGCATGTGTCCTAGAGGGCTGTGCA
TGCATATGTATGTGTGTCCATTTATGATTCATGTGGGTAAAGTACTATTTCCCAGAAGTGACAG
AGAAAATAAAGTGTTTTAGAAATTGATGGATAGATTTTTACATCTG

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Protein Sequences


Protein RefSeqs	XP_003481737	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000037389
	ENSSSCP00000037389.1
	ENSSSCP00015037536.1
	ENSSSCP00025002192.1
	ENSSSCP00035028833.1
	ENSSSCP00040030559.1
	ENSSSCP00045018937.1
	ENSSSCP00050034355.1
	ENSSSCP00055018944.1
	ENSSSCP00065018563.1
	ENSSSCP00070024874.1

RefSeq Acc Id:

XP_003481737 ⟸ XM_003481689

- UniProtKB:

A0A286ZNW8 (UniProtKB/TrEMBL), A0A4X1U9L6 (UniProtKB/TrEMBL), A0A8D0UAE9 (UniProtKB/TrEMBL), A0A8D0LZL6 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAGDIVYADINIARTLSSEHSSSVQRSDSHHHGIFLRVGCAMIVILLVIVIVLSIFVIQFKSAR
HIKGDNESKEKNCARQNESETLTSTVSSNSSTTHKPCPFKDWKLHGGKCYWVAEKKKSWNESKN
DCAQKESHLMVIRDFTDMSFLWRNLNISEFYWVGLNIPSGGKSWTWVDNNTFDPHLFSIEENKP
RTRSMKCAKVSYTEIAKENCAENNHWICQL

hide sequence

Protein Domains

C-type lectin

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000034555	ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015068463	UniProtKB/TrEMBL
	ENSSSCG00025004220	UniProtKB/TrEMBL
	ENSSSCG00035053208	UniProtKB/TrEMBL
	ENSSSCG00040052998	UniProtKB/TrEMBL
	ENSSSCG00045016125	UniProtKB/TrEMBL
	ENSSSCG00050058635	UniProtKB/TrEMBL
	ENSSSCG00055012218	UniProtKB/TrEMBL
	ENSSSCG00065032225	UniProtKB/TrEMBL
	ENSSSCG00070015185	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000043848	ENTREZGENE
	ENSSSCT00000043848.2	UniProtKB/TrEMBL
	ENSSSCT00015091703.1	UniProtKB/TrEMBL
	ENSSSCT00025005592.1	UniProtKB/TrEMBL
	ENSSSCT00035070997.1	UniProtKB/TrEMBL
	ENSSSCT00040071618.1	UniProtKB/TrEMBL
	ENSSSCT00045027412.1	UniProtKB/TrEMBL
	ENSSSCT00050079927.1	UniProtKB/TrEMBL
	ENSSSCT00055023933.1	UniProtKB/TrEMBL
	ENSSSCT00065043642.1	UniProtKB/TrEMBL
	ENSSSCT00070029833.1	UniProtKB/TrEMBL
Gene3D-CATH	3.10.100.10	UniProtKB/TrEMBL
InterPro	C-type_lectin-like	UniProtKB/TrEMBL
	C-type_lectin-like/link_sf	UniProtKB/TrEMBL
	C-type_Lectin_Receptor_IMM	UniProtKB/TrEMBL
	CTDL_fold	UniProtKB/TrEMBL
	NKR-like_CTLD	UniProtKB/TrEMBL
KEGG Report	ssc:100520491	UniProtKB/TrEMBL
NCBI Gene	LOC100520491	ENTREZGENE
PANTHER	C-TYPE LECTIN DOMAIN-CONTAINING PROTEIN-RELATED	UniProtKB/TrEMBL
	KILLER CELL LECTIN-LIKE RECEPTOR SUBFAMILY F MEMBER 2	UniProtKB/TrEMBL
Pfam	Lectin_C	UniProtKB/TrEMBL
PROSITE	C_TYPE_LECTIN_2	UniProtKB/TrEMBL
SMART	CLECT	UniProtKB/TrEMBL
Superfamily-SCOP	SSF56436	UniProtKB/TrEMBL
UniProt	A0A286ZNW8	ENTREZGENE, UniProtKB/TrEMBL
	A0A4X1U9L6	ENTREZGENE
	A0A8D0LZL6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UAE9	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1U9L6	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-01-25	LOC100520491	killer cell lectin-like receptor subfamily B member 1B	LOC100520491	killer cell lectin-like receptor subfamily B member 1B allele B	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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