PRR7 (proline rich 7, synaptic) - Rat Genome Database

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Gene: PRR7 (proline rich 7, synaptic) Sus scrofa
Analyze
Symbol: PRR7
Name: proline rich 7, synaptic
RGD ID: 14036659
Description: ENCODES a protein that exhibits protein-containing complex binding (ortholog); INVOLVED IN positive regulation of cysteine-type endopeptidase activity (ortholog); ASSOCIATED WITH Ehlers-Danlos syndrome dermatosparaxis type (ortholog); Ehlers-Danlos syndrome spondylodysplastic type 2 (ortholog); Marfanoid Mental Retardation Syndrome, Autosomal (ortholog); FOUND IN glutamatergic synapse (ortholog); neuron projection (ortholog); nucleus (ortholog); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: proline-rich protein 7
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,496,106 - 80,505,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,496,105 - 80,508,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712  


Genomics

Comparative Map Data
PRR7
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,496,106 - 80,505,430 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1280,496,105 - 80,508,825 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PRR7
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,445,995 - 177,456,286 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,446,445 - 177,456,286 (+)EnsemblGRCh38hg38GRCh38
GRCh375176,872,996 - 176,883,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,806,400 - 176,815,889 (+)NCBINCBI36Build 36hg18NCBI36
Build 345176,806,401 - 176,815,889NCBI
Celera5171,618,357 - 171,627,632 (-)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,794,261 - 171,803,535 (+)NCBIHuRef
CHM1_15176,307,202 - 176,316,315 (+)NCBICHM1_1
T2T-CHM13v2.05177,989,257 - 177,999,332 (+)NCBIT2T-CHM13v2.0
Prr7
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,612,080 - 55,620,968 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,612,080 - 55,620,967 (+)EnsemblGRCm39 Ensembl
GRCm381355,464,267 - 55,473,162 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,464,267 - 55,473,154 (+)EnsemblGRCm38mm10GRCm38
MGSCv371355,565,628 - 55,574,516 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361355,481,647 - 55,482,774 (+)NCBIMGSCv36mm8
Celera1356,518,298 - 56,527,198 (+)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Prr7
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,170,405 - 9,178,814 (-)NCBIGRCr8
mRatBN7.2179,164,375 - 9,173,669 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,165,269 - 9,172,536 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx179,181,390 - 9,182,514 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,711,423 - 10,712,547 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,177,778 - 9,178,902 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,693,274 - 9,702,795 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,694,168 - 9,695,292 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01711,803,146 - 11,811,418 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41715,209,243 - 15,210,367 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera179,243,777 - 9,244,901 (-)NCBICelera
Cytogenetic Map17p14NCBI
Prr7
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,692,004 - 29,695,113 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540829,685,254 - 29,695,113 (+)NCBIChiLan1.0ChiLan1.0
PRR7
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,530,012 - 172,540,600 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,669,548 - 170,680,144 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,748,020 - 172,757,989 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,818,184 - 179,820,471 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,818,184 - 179,821,479 (+)Ensemblpanpan1.1panPan2
PRR7
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1435,913,300 - 35,923,823 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl435,913,472 - 35,943,221 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha435,880,991 - 35,882,194 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0436,280,009 - 36,281,212 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,280,090 - 36,281,075 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,105,275 - 36,106,470 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,291,229 - 36,292,426 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,800,703 - 36,801,904 (-)NCBIUU_Cfam_GSD_1.0
Prr7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,701,213 - 122,710,382 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,726,070 - 1,735,343 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,726,143 - 1,735,295 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PRR7
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,458,347 - 79,467,421 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,466,186 - 79,467,257 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607510,650,015 - 10,659,071 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Prr7
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,632,309 - 12,633,729 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473312,632,297 - 12,633,521 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in PRR7
49 total Variants

Expression

RNA-SEQ Expression

ectoderm
nervous system
5 5

Sequence


Ensembl Acc Id: ENSSSCT00000045845   ⟹   ENSSSCP00000031845
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl280,496,106 - 80,505,430 (-)Ensembl
RefSeq Acc Id: XM_021084393   ⟹   XP_020940052
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1280,496,105 - 80,508,825 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084394   ⟹   XP_020940053
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1280,496,105 - 80,505,126 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021084395   ⟹   XP_020940054
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1280,496,105 - 80,505,126 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020940052   ⟸   XM_021084393
- UniProtKB: A0A286ZJV2 (UniProtKB/TrEMBL),   A0A4X1SEN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940054   ⟸   XM_021084395
- UniProtKB: A0A286ZJV2 (UniProtKB/TrEMBL),   A0A4X1SEN0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020940053   ⟸   XM_021084394
- UniProtKB: A0A286ZJV2 (UniProtKB/TrEMBL),   A0A4X1SEN0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031845   ⟸   ENSSSCT00000045845


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000040698 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015035474 UniProtKB/TrEMBL
  ENSSSCG00025064168 UniProtKB/TrEMBL
  ENSSSCG00030074359 UniProtKB/TrEMBL
  ENSSSCG00035008260 UniProtKB/TrEMBL
  ENSSSCG00040053525 UniProtKB/TrEMBL
  ENSSSCG00045037507 UniProtKB/TrEMBL
  ENSSSCG00050052542 UniProtKB/TrEMBL
  ENSSSCG00055014481 UniProtKB/TrEMBL
  ENSSSCG00060072917 UniProtKB/TrEMBL
  ENSSSCG00065072050 UniProtKB/TrEMBL
  ENSSSCG00070000303 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000045845 ENTREZGENE
  ENSSSCT00000045845.1 UniProtKB/TrEMBL
  ENSSSCT00015047080.1 UniProtKB/TrEMBL
  ENSSSCT00025087962.1 UniProtKB/TrEMBL
  ENSSSCT00030104331.1 UniProtKB/TrEMBL
  ENSSSCT00035010292.1 UniProtKB/TrEMBL
  ENSSSCT00040072355.1 UniProtKB/TrEMBL
  ENSSSCT00045064725.1 UniProtKB/TrEMBL
  ENSSSCT00050071562.1 UniProtKB/TrEMBL
  ENSSSCT00055028558.1 UniProtKB/TrEMBL
  ENSSSCT00060099672.1 UniProtKB/TrEMBL
  ENSSSCT00065099002.1 UniProtKB/TrEMBL
  ENSSSCT00065099013.1 UniProtKB/TrEMBL
  ENSSSCT00070000537.1 UniProtKB/TrEMBL
InterPro WW_domain-binding UniProtKB/TrEMBL
NCBI Gene PRR7 ENTREZGENE
PANTHER PROLINE-RICH PROTEIN 7 UniProtKB/TrEMBL
  PTHR16209 UniProtKB/TrEMBL
UniProt A0A286ZJV2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SEN0 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:91863 ENTREZGENE