ATOH8 (atonal bHLH transcription factor 8) - Rat Genome Database

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Gene: ATOH8 (atonal bHLH transcription factor 8) Sus scrofa
Analyze
Symbol: ATOH8
Name: atonal bHLH transcription factor 8
RGD ID: 14034652
Description: ENCODES a protein that exhibits DNA-binding transcription factor activity (inferred); DNA-binding transcription factor binding (inferred); E-box binding (inferred); INVOLVED IN formation of primary germ layer (inferred); myoblast proliferation (inferred); negative regulation of DNA-templated transcription (inferred); ASSOCIATED WITH Chemical and Drug Induced Liver Injury (ortholog); hereditary spastic paraplegia 31 (ortholog); FOUND IN cytoplasm (inferred); nucleoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: atonal homolog 8; protein atonal homolog 8
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,964,550 - 59,001,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,964,541 - 59,001,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,023,957 - 62,037,650 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
ATOH8
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl358,964,550 - 59,001,145 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1358,964,541 - 59,001,620 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2362,023,957 - 62,037,650 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ATOH8
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38285,753,991 - 85,791,383 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl285,751,344 - 85,791,383 (+)EnsemblGRCh38hg38GRCh38
GRCh37285,981,114 - 86,018,506 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36285,834,531 - 85,868,700 (+)NCBINCBI36Build 36hg18NCBI36
Build 34285,892,679 - 85,926,843NCBI
Celera285,808,992 - 85,846,589 (+)NCBICelera
Cytogenetic Map2p11.2NCBI
HuRef285,877,969 - 85,915,872 (+)NCBIHuRef
CHM1_1285,910,490 - 85,948,082 (+)NCBICHM1_1
T2T-CHM13v2.0285,755,861 - 85,793,443 (+)NCBIT2T-CHM13v2.0
Atoh8
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39672,183,158 - 72,212,765 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl672,183,161 - 72,212,561 (-)EnsemblGRCm39 Ensembl
GRCm38672,206,174 - 72,235,780 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl672,206,177 - 72,235,577 (-)EnsemblGRCm38mm10GRCm38
MGSCv37672,156,171 - 72,185,571 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36672,135,686 - 72,165,086 (-)NCBIMGSCv36mm8
Celera674,294,593 - 74,323,803 (-)NCBICelera
Cytogenetic Map6C1NCBI
cM Map632.27NCBI
Atoh8
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84105,818,203 - 105,850,379 (-)NCBIGRCr8
mRatBN7.24104,259,992 - 104,292,168 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4104,259,992 - 104,292,168 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4109,640,293 - 109,672,441 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04105,415,413 - 105,447,561 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04104,029,666 - 104,061,840 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04100,067,341 - 100,099,517 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4100,067,341 - 100,099,517 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04164,837,904 - 164,870,076 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44105,499,942 - 105,532,118 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera493,414,104 - 93,446,186 (-)NCBICelera
Cytogenetic Map4q32NCBI
Atoh8
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554241,776,127 - 1,802,763 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554241,775,139 - 1,803,106 (-)NCBIChiLan1.0ChiLan1.0
ATOH8
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21240,597,630 - 40,632,032 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A40,600,391 - 40,634,756 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A85,803,414 - 85,837,858 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A87,352,506 - 87,386,824 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A87,352,904 - 87,362,938 (+)Ensemblpanpan1.1panPan2
ATOH8
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11739,255,725 - 39,280,022 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1738,932,055 - 38,963,215 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01739,981,570 - 40,012,736 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1739,981,579 - 40,013,544 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11739,148,617 - 39,179,776 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01739,184,692 - 39,215,881 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01739,571,458 - 39,602,641 (-)NCBIUU_Cfam_GSD_1.0
Atoh8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629279,306,296 - 79,327,333 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367121,529,420 - 1,552,185 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367121,529,508 - 1,552,148 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ATOH8
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11421,368,197 - 21,402,650 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604591,066,989 - 91,112,617 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Atoh8
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474917,399,111 - 17,428,893 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474917,397,332 - 17,428,980 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ATOH8
937 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 19 3 5 14 12 19 3 6 1

Sequence


Ensembl Acc Id: ENSSSCT00000009013   ⟹   ENSSSCP00000008787
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl358,964,550 - 59,001,145 (-)Ensembl
RefSeq Acc Id: XM_013995991   ⟹   XP_013851445
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1358,964,541 - 59,001,620 (-)NCBI
Sequence:
RefSeq Acc Id: XP_013851445   ⟸   XM_013995991
- UniProtKB: A0A8D0TSC9 (UniProtKB/TrEMBL),   F1SVB9 (UniProtKB/TrEMBL),   A0A4X1W650 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000008787   ⟸   ENSSSCT00000009013
Protein Domains
bHLH


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000008230 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025076536 UniProtKB/TrEMBL
  ENSSSCG00035010661 UniProtKB/TrEMBL
  ENSSSCG00045028553 UniProtKB/TrEMBL
  ENSSSCG00055020733 UniProtKB/TrEMBL
  ENSSSCG00060048176 UniProtKB/TrEMBL
  ENSSSCG00065040602 UniProtKB/TrEMBL
  ENSSSCG00070029039 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000009013 ENTREZGENE
  ENSSSCT00000009013.5 UniProtKB/TrEMBL
  ENSSSCT00025106030.1 UniProtKB/TrEMBL
  ENSSSCT00035013333.1 UniProtKB/TrEMBL
  ENSSSCT00045048624.1 UniProtKB/TrEMBL
  ENSSSCT00055040641.1 UniProtKB/TrEMBL
  ENSSSCT00060065417.1 UniProtKB/TrEMBL
  ENSSSCT00065055502.1 UniProtKB/TrEMBL
  ENSSSCT00070058236.1 UniProtKB/TrEMBL
Gene3D-CATH 4.10.280.10 UniProtKB/TrEMBL
InterPro ATOH8 UniProtKB/TrEMBL
  bHLH_dom UniProtKB/TrEMBL
  bHLH_transcription_factors UniProtKB/TrEMBL
  HLH_DNA-bd_sf UniProtKB/TrEMBL
NCBI Gene ATOH8 ENTREZGENE
PANTHER BASIC HELIX-LOOP-HELIX PROTEIN NEUROGENIN-RELATED UniProtKB/TrEMBL
  PTHR19290:SF102 UniProtKB/TrEMBL
Pfam HLH UniProtKB/TrEMBL
PROSITE BHLH UniProtKB/TrEMBL
SMART HLH UniProtKB/TrEMBL
Superfamily-SCOP SSF47459 UniProtKB/TrEMBL
UniProt A0A4X1W650 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TSC9 ENTREZGENE, UniProtKB/TrEMBL
  F1SVB9 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:85633 ENTREZGENE