FAM174A (family with sequence similarity 174 member A) - Rat Genome Database

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Gene: FAM174A (family with sequence similarity 174 member A) Sus scrofa
Analyze
Symbol: FAM174A
Name: family with sequence similarity 174 member A
RGD ID: 14028864
Description: ASSOCIATED WITH familial adenomatous polyposis 1 (ortholog); Hereditary Neoplastic Syndromes (ortholog); Neurodevelopmental Disorders (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: membrane protein FAM174A
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2106,555,289 - 106,583,694 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12106,555,242 - 106,581,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22110,536,597 - 110,563,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

Genomics

Comparative Map Data
FAM174A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2106,555,289 - 106,583,694 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12106,555,242 - 106,581,912 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22110,536,597 - 110,563,200 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FAM174A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385100,535,374 - 100,586,741 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5100,535,338 - 100,586,741 (+)EnsemblGRCh38hg38GRCh38
GRCh37599,871,078 - 99,922,445 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36599,899,023 - 99,950,339 (+)NCBINCBI36Build 36hg18NCBI36
Celera595,818,712 - 95,870,036 (+)NCBICelera
Cytogenetic Map5q21.1NCBI
HuRef595,054,071 - 95,105,396 (+)NCBIHuRef
CHM1_1599,303,131 - 99,354,447 (+)NCBICHM1_1
T2T-CHM13v2.05101,043,697 - 101,095,060 (+)NCBIT2T-CHM13v2.0
Fam174a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,241,353 - 95,263,009 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,241,348 - 95,263,009 (+)EnsemblGRCm39 Ensembl
GRCm38195,313,628 - 95,335,284 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,313,623 - 95,335,284 (+)EnsemblGRCm38mm10GRCm38
MGSCv37197,210,205 - 97,231,861 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36197,144,150 - 97,165,471 (+)NCBIMGSCv36mm8
Celera198,172,416 - 98,194,072 (+)NCBICelera
Cytogenetic Map1DNCBI
cM Map147.76NCBI
Fam174a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr89103,190,144 - 103,208,419 (+)NCBIGRCr8
mRatBN7.2995,742,815 - 95,761,083 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl995,742,927 - 95,761,081 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx9104,167,440 - 104,185,594 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.09109,295,426 - 109,313,580 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.09107,638,792 - 107,656,946 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.09102,862,761 - 102,881,046 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl9102,862,890 - 102,881,038 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.09102,475,439 - 102,493,703 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4994,575,773 - 94,593,929 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1994,785,252 - 94,803,406 (+)NCBI
Celera993,215,983 - 93,234,139 (+)NCBICelera
Cytogenetic Map9q36NCBI
Fam174a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541812,877,982 - 12,911,864 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541812,877,465 - 12,912,096 (-)NCBIChiLan1.0ChiLan1.0
FAM174A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2495,786,824 - 95,838,530 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1593,940,472 - 93,992,177 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0595,863,985 - 95,915,633 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15101,533,818 - 101,585,468 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5101,533,818 - 101,585,468 (+)Ensemblpanpan1.1panPan2
FAM174A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.139,974,049 - 10,009,405 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl39,986,930 - 10,009,244 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha311,317,501 - 11,353,058 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.039,866,584 - 9,902,093 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl39,879,467 - 9,901,755 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.139,805,499 - 9,841,180 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.039,827,750 - 9,863,476 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.039,981,515 - 10,023,349 (-)NCBIUU_Cfam_GSD_1.0
Fam174a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213165,387,008 - 165,434,757 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365233,572,913 - 3,620,252 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365233,572,959 - 3,620,127 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM174A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1234,056,450 - 4,100,550 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl234,056,430 - 4,100,600 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603610,292,124 - 10,336,239 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam174a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474318,960,960 - 18,997,925 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474318,961,538 - 18,997,110 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM174A
629 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000015491   ⟹   ENSSSCP00000015081
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2106,555,289 - 106,583,694 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000074212   ⟹   ENSSSCP00000063207
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl2106,555,369 - 106,768,595 (+)Ensembl
RefSeq Acc Id: XM_003123804   ⟹   XP_003123852
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12106,555,242 - 106,581,912 (+)NCBI
Sequence:
RefSeq Acc Id: XM_005661558   ⟹   XP_005661615
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.12106,555,340 - 106,568,457 (+)NCBI
Sequence:
RefSeq Acc Id: XP_003123852   ⟸   XM_003123804
- Peptide Label: isoform X1
- UniProtKB: F1RN64 (UniProtKB/TrEMBL),   A0A8D1TYT3 (UniProtKB/TrEMBL),   A0A8D1TYT2 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005661615   ⟸   XM_005661558
- Peptide Label: isoform X2
- UniProtKB: F1RN64 (UniProtKB/TrEMBL),   A0A8D1TYT3 (UniProtKB/TrEMBL),   A0A8D1TYT2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000015081   ⟸   ENSSSCT00000015491
Ensembl Acc Id: ENSSSCP00000063207   ⟸   ENSSSCT00000074212


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000014179 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005030462 UniProtKB/TrEMBL
  ENSSSCG00015005436 UniProtKB/TrEMBL
  ENSSSCG00025054197 UniProtKB/TrEMBL
  ENSSSCG00030060744 UniProtKB/TrEMBL
  ENSSSCG00035032164 UniProtKB/TrEMBL
  ENSSSCG00040008289 UniProtKB/TrEMBL
  ENSSSCG00045020894 UniProtKB/TrEMBL
  ENSSSCG00050067754 UniProtKB/TrEMBL
  ENSSSCG00055009153 UniProtKB/TrEMBL
  ENSSSCG00060015870 UniProtKB/TrEMBL
  ENSSSCG00065029650 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000015491 ENTREZGENE
  ENSSSCT00000015491.5 UniProtKB/TrEMBL
  ENSSSCT00005048439.1 UniProtKB/TrEMBL
  ENSSSCT00005048465.1 UniProtKB/TrEMBL
  ENSSSCT00015007253.1 UniProtKB/TrEMBL
  ENSSSCT00025074063.1 UniProtKB/TrEMBL
  ENSSSCT00025074148.1 UniProtKB/TrEMBL
  ENSSSCT00025074215.1 UniProtKB/TrEMBL
  ENSSSCT00025074294.1 UniProtKB/TrEMBL
  ENSSSCT00030084846.1 UniProtKB/TrEMBL
  ENSSSCT00035042598.1 UniProtKB/TrEMBL
  ENSSSCT00035042606.1 UniProtKB/TrEMBL
  ENSSSCT00035042611.1 UniProtKB/TrEMBL
  ENSSSCT00035042616.1 UniProtKB/TrEMBL
  ENSSSCT00040010838.1 UniProtKB/TrEMBL
  ENSSSCT00045035595.1 UniProtKB/TrEMBL
  ENSSSCT00045035655.1 UniProtKB/TrEMBL
  ENSSSCT00045035680.1 UniProtKB/TrEMBL
  ENSSSCT00045035723.1 UniProtKB/TrEMBL
  ENSSSCT00050092402.1 UniProtKB/TrEMBL
  ENSSSCT00055017855.1 UniProtKB/TrEMBL
  ENSSSCT00055017901.1 UniProtKB/TrEMBL
  ENSSSCT00055017934.1 UniProtKB/TrEMBL
  ENSSSCT00055017972.1 UniProtKB/TrEMBL
  ENSSSCT00060021117.1 UniProtKB/TrEMBL
  ENSSSCT00065039991.1 UniProtKB/TrEMBL
  ENSSSCT00065039996.1 UniProtKB/TrEMBL
InterPro DUF1180 UniProtKB/TrEMBL
KEGG Report ssc:100525564 UniProtKB/TrEMBL
NCBI Gene FAM174A ENTREZGENE
PANTHER MEMBRANE PROTEIN FAM174A UniProtKB/TrEMBL
  PTHR28607 UniProtKB/TrEMBL
Pfam DUF1180 UniProtKB/TrEMBL
UniProt A0A8D0LSE8_PIG UniProtKB/TrEMBL
  A0A8D0SH16_PIG UniProtKB/TrEMBL
  A0A8D0SQ31_PIG UniProtKB/TrEMBL
  A0A8D0ZKM1_PIG UniProtKB/TrEMBL
  A0A8D1Q5N2_PIG UniProtKB/TrEMBL
  A0A8D1TYS8_PIG UniProtKB/TrEMBL
  A0A8D1TYT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1TYT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D2C4H8_PIG UniProtKB/TrEMBL
  F1RN64 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:87931 ENTREZGENE