CENPV (centromere protein V) - Rat Genome Database

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Gene: CENPV (centromere protein V) Sus scrofa
Analyze
Symbol: CENPV
Name: centromere protein V
RGD ID: 14025037
Description: ENCODES a protein that exhibits carbon-sulfur lyase activity (inferred); metal ion binding (inferred); INVOLVED IN ameboidal-type cell migration (ortholog); centromere complex assembly (ortholog); ASSOCIATED WITH genetic disease (ortholog); FOUND IN cytosol (ortholog); microtubule cytoskeleton (ortholog); midbody (ortholog)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,200,020 - 59,210,033 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,200,041 - 59,215,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,327,525 - 62,334,769 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
CENPV
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1259,200,020 - 59,210,033 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11259,200,041 - 59,215,941 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21262,327,525 - 62,334,769 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CENPV
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381716,342,537 - 16,353,469 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1716,342,534 - 16,353,656 (-)EnsemblGRCh38hg38GRCh38
GRCh371716,245,851 - 16,256,783 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361716,186,573 - 16,197,537 (-)NCBINCBI36Build 36hg18NCBI36
Build 341716,186,573 - 16,197,537NCBI
Celera1716,148,781 - 16,159,756 (-)NCBICelera
Cytogenetic Map17p11.2NCBI
HuRef1716,112,444 - 16,123,547 (-)NCBIHuRef
CHM1_11716,255,595 - 16,266,571 (-)NCBICHM1_1
T2T-CHM13v2.01716,244,860 - 16,255,803 (-)NCBIT2T-CHM13v2.0
Cenpv
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391162,415,770 - 62,430,695 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1162,415,772 - 62,430,087 (-)EnsemblGRCm39 Ensembl
GRCm381162,524,944 - 62,539,869 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1162,524,946 - 62,539,261 (-)EnsemblGRCm38mm10GRCm38
MGSCv371162,338,446 - 62,352,763 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361162,341,134 - 62,355,456 (-)NCBIMGSCv36mm8
Celera1169,444,365 - 69,458,682 (-)NCBICelera
Cytogenetic Map11B2NCBI
cM Map1138.43NCBI
Cenpv
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81047,713,778 - 47,746,800 (-)NCBIGRCr8
mRatBN7.21047,214,479 - 47,228,552 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1047,214,490 - 47,228,761 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1051,918,252 - 51,932,191 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01051,408,802 - 51,422,741 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01046,912,210 - 46,926,150 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01048,846,513 - 48,861,893 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1048,846,728 - 48,860,902 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01048,632,735 - 48,646,443 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41048,705,067 - 48,718,758 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1046,461,841 - 46,476,590 (-)NCBICelera
Cytogenetic Map10q23NCBI
Cenpv
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554671,657,765 - 1,669,758 (-)NCBIChiLan1.0ChiLan1.0
CENPV
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21956,281,996 - 56,292,948 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11761,093,709 - 61,104,652 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01735,247,664 - 35,258,656 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A110,540,206 - 110,551,110 (-)NCBIpanpan1.1PanPan1.1panPan2
CENPV
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1539,568,115 - 39,582,900 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl539,567,790 - 39,582,897 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha539,714,833 - 39,729,331 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0539,678,720 - 39,693,227 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl539,678,694 - 39,692,981 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1539,650,419 - 39,664,916 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0539,595,691 - 39,610,178 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0539,787,890 - 39,802,374 (+)NCBIUU_Cfam_GSD_1.0
Cenpv
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560259,535,523 - 59,545,066 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936821267,178 - 276,401 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936821267,137 - 276,969 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CENPV
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11615,315,939 - 15,326,732 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1615,316,028 - 15,326,445 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660595,640,613 - 5,651,518 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cenpv
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248774,075,315 - 4,101,885 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248774,075,029 - 4,102,164 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CENPV
667 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 2 1
Low 10 4 3 3 1 22 2 3 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000019629   ⟹   ENSSSCP00000019109
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1259,200,031 - 59,209,664 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000091310   ⟹   ENSSSCP00000073255
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1259,200,020 - 59,210,033 (+)Ensembl
RefSeq Acc Id: XM_021066286   ⟹   XP_020921945
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11259,200,041 - 59,209,670 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021066287   ⟹   XP_020921946
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11259,200,041 - 59,215,941 (+)NCBI
Sequence:
RefSeq Acc Id: XP_020921946   ⟸   XM_021066287
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_020921945   ⟸   XM_021066286
- Peptide Label: isoform X1
- UniProtKB: A0A8D1ALJ6 (UniProtKB/TrEMBL),   F1SDE3 (UniProtKB/TrEMBL),   A0A8D1ETP1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000019109   ⟸   ENSSSCT00000019629
RefSeq Acc Id: ENSSSCP00000073255   ⟸   ENSSSCT00000091310
Protein Domains
CENP-V/GFA


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000018034 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00025070487 UniProtKB/TrEMBL
  ENSSSCG00030026993 UniProtKB/TrEMBL
  ENSSSCG00035064773 UniProtKB/TrEMBL
  ENSSSCG00040048977 UniProtKB/TrEMBL
  ENSSSCG00045028410 UniProtKB/TrEMBL
  ENSSSCG00050077346 UniProtKB/TrEMBL
  ENSSSCG00055024889 UniProtKB/TrEMBL
  ENSSSCG00060074748 UniProtKB/TrEMBL
  ENSSSCG00065032079 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000091310.2 UniProtKB/TrEMBL
  ENSSSCT00025096766.1 UniProtKB/TrEMBL
  ENSSSCT00030037731.1 UniProtKB/TrEMBL
  ENSSSCT00030037740.1 UniProtKB/TrEMBL
  ENSSSCT00035087204.1 UniProtKB/TrEMBL
  ENSSSCT00040066002.1 UniProtKB/TrEMBL
  ENSSSCT00040066074.1 UniProtKB/TrEMBL
  ENSSSCT00045048423.1 UniProtKB/TrEMBL
  ENSSSCT00050106438.1 UniProtKB/TrEMBL
  ENSSSCT00055049101.1 UniProtKB/TrEMBL
  ENSSSCT00060102266.1 UniProtKB/TrEMBL
  ENSSSCT00065043458.1 UniProtKB/TrEMBL
Gene3D-CATH 2.170.150.70 UniProtKB/TrEMBL
InterPro GFA/CENP-V UniProtKB/TrEMBL
  Mss4-like_sf UniProtKB/TrEMBL
NCBI Gene CENPV ENTREZGENE
PANTHER CENTROMERE PROTEIN V UniProtKB/TrEMBL
  CENTROMERE PROTEIN V UniProtKB/TrEMBL
Pfam GFA UniProtKB/TrEMBL
PROSITE CENP_V_GFA UniProtKB/TrEMBL
Superfamily-SCOP SSF51316 UniProtKB/TrEMBL
UniProt A0A5G2R844_PIG UniProtKB/TrEMBL
  A0A8D1ALJ6 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1ETP1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EV05_PIG UniProtKB/TrEMBL
  A0A8D1IM07_PIG UniProtKB/TrEMBL
  F1SDE3 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:98981 ENTREZGENE