CFAP58 (cilia and flagella associated protein 58) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: CFAP58 (cilia and flagella associated protein 58) Sus scrofa
Analyze
Symbol: CFAP58
Name: cilia and flagella associated protein 58
RGD ID: 14010053
Description: INVOLVED IN flagellated sperm motility (ortholog); sperm axoneme assembly (ortholog); ASSOCIATED WITH desmoplastic/nodular medulloblastoma (ortholog); oligoasthenoteratozoospermia (ortholog); spermatogenic failure 49 (ortholog); FOUND IN centrosome (inferred); motile cilium (inferred); sperm flagellum (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CCDC147; cilia- and flagella-associated protein 58; coiled-coil domain containing 147
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14115,285,979 - 115,410,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114115,292,386 - 115,410,852 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214125,263,625 - 125,381,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
CFAP58
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl14115,285,979 - 115,410,481 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.114115,292,386 - 115,410,852 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.214125,263,625 - 125,381,599 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CFAP58
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3810104,338,520 - 104,455,102 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl10104,353,833 - 104,455,102 (+)EnsemblGRCh38hg38GRCh38
GRCh3710106,098,278 - 106,214,860 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3610106,103,512 - 106,204,838 (+)NCBINCBI36Build 36hg18NCBI36
Build 3410106,103,511 - 106,204,838NCBI
Celera1099,854,331 - 99,955,667 (+)NCBICelera
Cytogenetic Map10q25.1NCBI
HuRef1099,745,240 - 99,846,554 (+)NCBIHuRef
CHM1_110106,397,331 - 106,498,658 (+)NCBICHM1_1
T2T-CHM13v2.010105,226,654 - 105,343,247 (+)NCBIT2T-CHM13v2.0
Cfap58
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391947,926,151 - 48,023,818 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1947,926,114 - 48,023,826 (+)EnsemblGRCm39 Ensembl
GRCm381947,937,712 - 48,035,379 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1947,937,675 - 48,035,387 (+)EnsemblGRCm38mm10GRCm38
MGSCv371948,012,202 - 48,109,869 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361947,991,023 - 48,088,690 (+)NCBIMGSCv36mm8
Celera1948,698,683 - 48,796,374 (+)NCBICelera
Cytogenetic Map19D1NCBI
cM Map1940.6NCBI
Cfap58
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81256,743,971 - 256,852,633 (+)NCBIGRCr8
mRatBN7.21246,802,691 - 246,911,363 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,802,665 - 246,911,374 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01267,689,258 - 267,798,291 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1271,292,390 - 271,400,597 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1267,689,328 - 267,798,059 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01275,121,111 - 275,228,613 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1242,566,673 - 242,673,552 (+)NCBICelera
Cytogenetic Map1q54-q55NCBI
Cfap58
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554856,213,542 - 6,319,376 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554856,208,412 - 6,319,367 (-)NCBIChiLan1.0ChiLan1.0
CFAP58
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v28116,192,127 - 116,343,369 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan110116,197,456 - 116,348,641 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v010100,905,434 - 101,056,560 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.110104,403,971 - 104,514,920 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl10104,412,171 - 104,514,920 (+)Ensemblpanpan1.1panPan2
CFAP58
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12816,653,212 - 16,752,229 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2816,653,208 - 16,751,838 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2816,825,614 - 16,924,778 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02817,131,371 - 17,228,860 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12816,678,840 - 16,777,928 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02816,707,588 - 16,812,819 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02816,846,275 - 16,945,449 (+)NCBIUU_Cfam_GSD_1.0
Cfap58
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440721330,166,018 - 30,259,707 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366001,769,851 - 1,862,876 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366001,769,243 - 1,861,341 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CFAP58
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1997,400,284 - 97,510,489 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl997,409,380 - 97,510,661 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604858,507,377 - 58,634,452 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cfap58
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248313,418,036 - 3,508,971 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248313,418,104 - 3,509,769 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in CFAP58
3831 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
3 12 3 3 1 12 3 5

Sequence


Ensembl Acc Id: ENSSSCT00000011610   ⟹   ENSSSCP00000011308
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14115,292,212 - 115,410,481 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000066848   ⟹   ENSSSCP00000063448
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14115,285,979 - 115,321,591 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000082871   ⟹   ENSSSCP00000071048
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl14115,285,979 - 115,410,481 (+)Ensembl
RefSeq Acc Id: XM_005671442   ⟹   XP_005671499
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.114115,292,386 - 115,410,852 (+)NCBI
Sequence:
RefSeq Acc Id: XP_005671499   ⟸   XM_005671442
- UniProtKB: F1S5N5 (UniProtKB/TrEMBL),   A0A4X1TIJ7 (UniProtKB/TrEMBL),   A0A8D1QQU4 (UniProtKB/TrEMBL),   A0A8D0IEL4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000011308   ⟸   ENSSSCT00000011610
Ensembl Acc Id: ENSSSCP00000063448   ⟸   ENSSSCT00000066848
Ensembl Acc Id: ENSSSCP00000071048   ⟸   ENSSSCT00000082871
Protein Domains
Cilia- and flagella-associated protein 58 central


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000010614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015036422 UniProtKB/TrEMBL
  ENSSSCG00025072675 UniProtKB/TrEMBL
  ENSSSCG00030022073 UniProtKB/TrEMBL
  ENSSSCG00035022544 UniProtKB/TrEMBL
  ENSSSCG00040059071 UniProtKB/TrEMBL
  ENSSSCG00045018194 UniProtKB/TrEMBL
  ENSSSCG00050057159 UniProtKB/TrEMBL
  ENSSSCG00055013373 UniProtKB/TrEMBL
  ENSSSCG00060057203 UniProtKB/TrEMBL
  ENSSSCG00065014262 UniProtKB/TrEMBL
  ENSSSCG00070010242 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000011610 ENTREZGENE
  ENSSSCT00000011610.5 UniProtKB/TrEMBL
  ENSSSCT00000066848.2 UniProtKB/TrEMBL
  ENSSSCT00000082871.2 UniProtKB/TrEMBL
  ENSSSCT00015048906.1 UniProtKB/TrEMBL
  ENSSSCT00015049150.1 UniProtKB/TrEMBL
  ENSSSCT00015049269.1 UniProtKB/TrEMBL
  ENSSSCT00025099966.1 UniProtKB/TrEMBL
  ENSSSCT00025100192.1 UniProtKB/TrEMBL
  ENSSSCT00025100452.1 UniProtKB/TrEMBL
  ENSSSCT00030030601.1 UniProtKB/TrEMBL
  ENSSSCT00030030610.1 UniProtKB/TrEMBL
  ENSSSCT00030030625.1 UniProtKB/TrEMBL
  ENSSSCT00035029467.1 UniProtKB/TrEMBL
  ENSSSCT00035029476.1 UniProtKB/TrEMBL
  ENSSSCT00035029479.1 UniProtKB/TrEMBL
  ENSSSCT00040080260.1 UniProtKB/TrEMBL
  ENSSSCT00040080336.1 UniProtKB/TrEMBL
  ENSSSCT00040080436.1 UniProtKB/TrEMBL
  ENSSSCT00045031114.1 UniProtKB/TrEMBL
  ENSSSCT00045031291.1 UniProtKB/TrEMBL
  ENSSSCT00050077917.1 UniProtKB/TrEMBL
  ENSSSCT00055026789.1 UniProtKB/TrEMBL
  ENSSSCT00060077951.1 UniProtKB/TrEMBL
  ENSSSCT00065018978.1 UniProtKB/TrEMBL
  ENSSSCT00065018988.1 UniProtKB/TrEMBL
  ENSSSCT00065018996.1 UniProtKB/TrEMBL
  ENSSSCT00070019916.1 UniProtKB/TrEMBL
InterPro CFAP58_CC UniProtKB/TrEMBL
KEGG Report ssc:100152602 UniProtKB/TrEMBL
NCBI Gene CFAP58 ENTREZGENE
PANTHER CILIA AND FLAGELLA-ASSOCIATED PROTEIN 58-RELATED UniProtKB/TrEMBL
  CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 58 UniProtKB/TrEMBL
Pfam DUF6871 UniProtKB/TrEMBL
UniProt A0A4X1TIJ7 ENTREZGENE
  A0A5G2QMV3_PIG UniProtKB/TrEMBL
  A0A8D0IB24_PIG UniProtKB/TrEMBL
  A0A8D0IEL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0TBT2_PIG UniProtKB/TrEMBL
  A0A8D0THA2_PIG UniProtKB/TrEMBL
  A0A8D0W0E8_PIG UniProtKB/TrEMBL
  A0A8D0W206_PIG UniProtKB/TrEMBL
  A0A8D1QQU4 ENTREZGENE, UniProtKB/TrEMBL
  F1S5N5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A4X1TIJ7 UniProtKB/TrEMBL
  A0A5G2R3Y6 UniProtKB/TrEMBL
VGNC ID VGNC:86603 ENTREZGENE