REXO2 (RNA exonuclease 2) - Rat Genome Database

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Gene: REXO2 (RNA exonuclease 2) Sus scrofa
Analyze
Symbol: REXO2
Name: RNA exonuclease 2
RGD ID: 13982157
Description: ENCODES a protein that exhibits 3'-5' exonuclease activity (inferred); 3'-5'-DNA exonuclease activity (inferred); 3'-5'-RNA exonuclease activity (inferred); INVOLVED IN nucleobase-containing compound metabolic process (ortholog); ASSOCIATED WITH chromosome 11 partial duplication syndrome (ortholog); intellectual disability (ortholog); FOUND IN cytoplasm (inferred); focal adhesion (inferred); mitochondrial intermembrane space (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: oligoribonuclease, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,977,971 - 41,989,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,977,969 - 41,988,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,890,872 - 46,901,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
REXO2Pigchromosome 11 partial duplication syndrome  ISOREXO2 (Homo sapiens)8554872ClinVar Annotator: match by term: Distal trisomy 11qClinVarPMID:25741868
REXO2Pigintellectual disability  ISOREXO2 (Homo sapiens)8554872ClinVar Annotator: match by term: Intellectual disabilityClinVar 


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
REXO2Pigdeoxynivalenol increases expressionEXP 6480464deoxynivalenol results in increased expression of REXO2 mRNACTDPMID:35307453


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
REXO2PigDNA metabolic process involved_inIEAGO:0008296150520179 GOCGO_REF:0000108
REXO2Pignucleobase-containing compound metabolic process involved_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pignucleobase-containing compound metabolic process acts_upstream_of_or_withinISOREXO2 (Homo sapiens)9068941 PMID:10851236MGIPMID:10851236

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
REXO2Pigcytoplasm located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pigfocal adhesion located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pigmitochondrial intermembrane space located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pigmitochondrial matrix located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pigmitochondrion located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pigmitochondrion is_active_inIBAPANTHER:PTN000114087 more ...150520179 GO_CentralGO_REF:0000033
REXO2Pignucleolus located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pignucleus located_inIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
REXO2Pig3'-5' exonuclease activity enablesIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pig3'-5'-DNA exonuclease activity enablesIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pig3'-5'-RNA exonuclease activity enablesIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pig3'-5'-RNA exonuclease activity enablesIBAPANTHER:PTN000114087 more ...150520179 GO_CentralGO_REF:0000033
REXO2Pig3'-5'-RNA exonuclease activity enablesIEAInterPro:IPR022894150520179 InterProGO_REF:0000002
REXO2Pigexonuclease activity enablesIEAUniProtKB-KW:KW-0269150520179 UniProtGO_REF:0000043
REXO2Pigmagnesium ion binding enablesIEAUniProtKB:Q9Y3B8 and ensembl:ENSP00000265881150520179 EnsemblGO_REF:0000107
REXO2Pignucleic acid binding enablesIEAInterPro:IPR036397150520179 InterProGO_REF:0000002

PMID:14681463   PMID:15679890   PMID:17145712   PMID:22301074   PMID:30032202  



REXO2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl941,977,971 - 41,989,257 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1941,977,969 - 41,988,699 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2946,890,872 - 46,901,598 (-)NCBISscrofa10.2Sscrofa10.2susScr3
REXO2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3811114,439,467 - 114,450,279 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl11114,439,435 - 114,450,279 (+)EnsemblGRCh38hg38GRCh38
GRCh3711114,310,189 - 114,321,001 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3611113,815,387 - 113,826,211 (+)NCBINCBI36Build 36hg18NCBI36
Celera11111,463,042 - 111,473,937 (+)NCBICelera
Cytogenetic Map11q23.2NCBI
HuRef11110,238,697 - 110,249,590 (+)NCBIHuRef
CHM1_111114,194,083 - 114,204,976 (+)NCBICHM1_1
T2T-CHM13v2.011114,449,884 - 114,460,696 (+)NCBIT2T-CHM13v2.0
Rexo2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39948,379,812 - 48,391,911 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl948,379,812 - 48,391,923 (-)EnsemblGRCm39 Ensembl
GRCm38948,468,512 - 48,480,611 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl948,468,512 - 48,480,623 (-)EnsemblGRCm38mm10GRCm38
MGSCv37948,276,619 - 48,288,716 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36948,220,481 - 48,232,578 (-)NCBIMGSCv36mm8
Celera945,765,503 - 45,777,617 (-)NCBICelera
Cytogenetic Map9A5.3NCBI
cM Map926.42NCBI
Rexo2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8857,708,420 - 57,720,142 (-)NCBIGRCr8
mRatBN7.2848,811,900 - 48,823,622 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl848,811,900 - 48,823,622 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx854,312,591 - 54,324,283 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0852,591,423 - 52,603,115 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0850,455,692 - 50,467,384 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0852,802,604 - 52,814,321 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl852,802,595 - 52,814,321 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0851,395,455 - 51,407,172 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4851,748,875 - 51,760,597 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1851,767,930 - 51,779,651 (-)NCBI
Celera848,370,956 - 48,382,755 (-)NCBICelera
Cytogenetic Map8q23NCBI
Rexo2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541216,025,037 - 16,037,757 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541216,025,304 - 16,035,925 (+)NCBIChiLan1.0ChiLan1.0
REXO2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v29115,172,120 - 115,188,483 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan111116,268,891 - 116,282,395 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v011109,313,231 - 109,323,794 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.111113,156,189 - 113,166,767 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl11113,156,189 - 113,166,767 (+)Ensemblpanpan1.1panPan2
REXO2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1518,919,283 - 18,929,899 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl518,919,286 - 18,930,378 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha518,844,854 - 18,855,230 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0518,867,066 - 18,877,457 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl518,867,066 - 18,877,552 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1519,005,645 - 19,016,034 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0518,906,965 - 18,917,344 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0518,951,639 - 18,962,034 (-)NCBIUU_Cfam_GSD_1.0
Rexo2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494796,481,210 - 96,491,380 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936612214,229 - 224,399 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936612214,229 - 224,393 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
REXO2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11105,845,091 - 105,856,507 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1105,845,173 - 105,857,646 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604320,187,511 - 20,198,402 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rexo2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247849,901,599 - 9,916,821 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247849,901,879 - 9,912,403 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in REXO2
196 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000016422   ⟹   ENSSSCP00000015981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,978,077 - 41,988,696 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000040955   ⟹   ENSSSCP00000031527
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,978,092 - 41,988,594 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000074044   ⟹   ENSSSCP00000072473
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,978,092 - 42,027,281 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000081559   ⟹   ENSSSCP00000069352
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,977,971 - 41,987,626 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000084632   ⟹   ENSSSCP00000069486
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,977,971 - 41,980,245 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000097541   ⟹   ENSSSCP00000080427
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl941,977,971 - 41,989,257 (+)Ensembl
RefSeq Acc Id: XM_003129878   ⟹   XP_003129926
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1941,977,969 - 41,988,699 (+)NCBI
Sequence:
1 to 30 of 56 rows
Protein RefSeqs XP_003129926 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000015981.4
  ENSSSCP00000031527
  ENSSSCP00000031527.2
  ENSSSCP00000069352.2
  ENSSSCP00000069486.1
  ENSSSCP00000080427.1
  ENSSSCP00015046207.1
  ENSSSCP00015046230.1
  ENSSSCP00015046247.1
  ENSSSCP00015046258.1
  ENSSSCP00015046263.1
  ENSSSCP00025019249.1
  ENSSSCP00025019283.1
  ENSSSCP00025019309.1
  ENSSSCP00025019322.1
  ENSSSCP00025019383.1
  ENSSSCP00030041640.1
  ENSSSCP00030041672.1
  ENSSSCP00030041701.1
  ENSSSCP00030041711.1
  ENSSSCP00030041724.1
  ENSSSCP00035006576.1
  ENSSSCP00035006578.1
  ENSSSCP00035006580.1
  ENSSSCP00035006581.1
  ENSSSCP00035006587.1
  ENSSSCP00040023363.1
  ENSSSCP00040023414.1
  ENSSSCP00040023454.1
1 to 30 of 56 rows
RefSeq Acc Id: XP_003129926   ⟸   XM_003129878
- UniProtKB: A0A480TPG6 (UniProtKB/TrEMBL),   A0A4X1T1G5 (UniProtKB/TrEMBL),   A0A286ZIZ9 (UniProtKB/TrEMBL),   A0A8D1SQ50 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000072473   ⟸   ENSSSCT00000074044
Ensembl Acc Id: ENSSSCP00000031527   ⟸   ENSSSCT00000040955
Ensembl Acc Id: ENSSSCP00000015981   ⟸   ENSSSCT00000016422
Ensembl Acc Id: ENSSSCP00000069486   ⟸   ENSSSCT00000084632
Exonuclease



1 to 40 of 93 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000015056 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015080087 UniProtKB/TrEMBL
  ENSSSCG00025033184 UniProtKB/TrEMBL
  ENSSSCG00030064622 UniProtKB/TrEMBL
  ENSSSCG00035014725 UniProtKB/TrEMBL
  ENSSSCG00040041979 UniProtKB/TrEMBL
  ENSSSCG00045008835 UniProtKB/TrEMBL
  ENSSSCG00050001436 UniProtKB/TrEMBL
  ENSSSCG00055010361 UniProtKB/TrEMBL
  ENSSSCG00060008684 UniProtKB/TrEMBL
  ENSSSCG00065035085 UniProtKB/TrEMBL
  ENSSSCG00070006079 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000016422.4 UniProtKB/TrEMBL
  ENSSSCT00000040955 ENTREZGENE
  ENSSSCT00000040955.3 UniProtKB/TrEMBL
  ENSSSCT00000081559.2 UniProtKB/TrEMBL
  ENSSSCT00000084632.2 UniProtKB/TrEMBL
  ENSSSCT00000097541.1 UniProtKB/TrEMBL
  ENSSSCT00015108842.1 UniProtKB/TrEMBL
  ENSSSCT00015108875.1 UniProtKB/TrEMBL
  ENSSSCT00015108910.1 UniProtKB/TrEMBL
  ENSSSCT00015108934.1 UniProtKB/TrEMBL
  ENSSSCT00015108949.1 UniProtKB/TrEMBL
  ENSSSCT00025045166.1 UniProtKB/TrEMBL
  ENSSSCT00025045239.1 UniProtKB/TrEMBL
  ENSSSCT00025045294.1 UniProtKB/TrEMBL
  ENSSSCT00025045327.1 UniProtKB/TrEMBL
  ENSSSCT00025045462.1 UniProtKB/TrEMBL
  ENSSSCT00030090369.1 UniProtKB/TrEMBL
  ENSSSCT00030090435.1 UniProtKB/TrEMBL
  ENSSSCT00030090495.1 UniProtKB/TrEMBL
  ENSSSCT00030090519.1 UniProtKB/TrEMBL
  ENSSSCT00030090564.1 UniProtKB/TrEMBL
  ENSSSCT00035018697.1 UniProtKB/TrEMBL
  ENSSSCT00035018704.1 UniProtKB/TrEMBL
  ENSSSCT00035018709.1 UniProtKB/TrEMBL
  ENSSSCT00035018711.1 UniProtKB/TrEMBL
  ENSSSCT00035018723.1 UniProtKB/TrEMBL
  ENSSSCT00040056179.1 UniProtKB/TrEMBL
  ENSSSCT00040056281.1 UniProtKB/TrEMBL
1 to 40 of 93 rows