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Gene: LHFPL6 (LHFPL tetraspan subfamily member 6) Sus scrofa

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Symbol:

LHFPL6

Name:

LHFPL tetraspan subfamily member 6

RGD ID:

13978095

Description:

ASSOCIATED WITH Experimental Liver Cirrhosis (ortholog); FOUND IN membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LHFP; lipoma HMGIC fusion partner

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	14,319,428 - 14,560,181 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	14,319,420 - 14,576,130 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	14,546,880 - 14,559,891 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Experimental Liver Cirrhosis (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IBA,IEA)

References

Additional References at PubMed

PMID:30032202

Genomics

Comparative Map Data

LHFPL6
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	11	14,319,428 - 14,560,181 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	11	14,319,420 - 14,576,130 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	11	14,546,880 - 14,559,891 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LHFPL6
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	13	39,342,892 - 39,603,193 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	13	39,209,116 - 39,603,528 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	13	39,917,029 - 40,177,330 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	13	38,815,029 - 39,075,356 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	13	38,815,029 - 39,075,201	NCBI
Celera	13	20,971,004 - 21,230,116 (-)	NCBI		Celera
Cytogenetic Map	13	q13.3-q14.11	NCBI
HuRef	13	20,717,038 - 20,976,465 (-)	NCBI		HuRef
CHM1_1	13	39,884,864 - 40,144,901 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	13	38,562,524 - 38,821,662 (-)	NCBI		T2T-CHM13v2.0

Lhfpl6
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	52,948,968 - 53,169,100 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	52,948,949 - 53,169,100 (+)	Ensembl		GRCm39 Ensembl
GRCm38	3	53,041,547 - 53,261,679 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	53,041,528 - 53,261,679 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	3	52,845,469 - 53,065,601 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	3	53,129,476 - 53,349,608 (+)	NCBI		MGSCv36	mm8
Celera	3	52,770,052 - 52,986,552 (+)	NCBI		Celera
Cytogenetic Map	3	C	NCBI
cM Map	3	24.17	NCBI

Lhfpl6
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	139,276,810 - 139,474,740 (+)	NCBI		GRCr8
mRatBN7.2	2	137,126,485 - 137,324,442 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	137,126,509 - 137,324,443 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	2	143,703,670 - 143,908,731 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	2	141,815,746 - 142,020,807 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	2	136,447,500 - 136,652,570 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	2	142,262,236 - 142,461,980 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	142,262,236 - 142,461,980 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	2	161,947,947 - 162,146,115 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	2	141,974,792 - 142,183,203 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	2	131,623,723 - 131,820,297 (+)	NCBI		Celera
Cytogenetic Map	2	q26	NCBI

Lhfpl6
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955431	6,745,848 - 6,976,647 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955431	6,745,745 - 6,977,662 (+)	NCBI	ChiLan1.0	ChiLan1.0

LHFPL6
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	14	38,874,719 - 39,133,596 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	13	29,979,578 - 30,238,405 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	13	20,560,260 - 20,819,037 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	13	39,147,003 - 39,405,533 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	13	39,182,518 - 39,403,746 (-)	Ensembl	panpan1.1		panPan2

LHFPL6
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	25	1,567,799 - 1,805,030 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	25	1,567,335 - 1,804,535 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	25	1,664,664 - 1,901,788 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	25	1,665,939 - 1,903,037 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	25	1,665,962 - 1,903,032 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	25	1,567,933 - 1,804,444 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	25	1,560,904 - 1,797,968 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	25	1,627,749 - 1,867,664 (+)	NCBI		UU_Cfam_GSD_1.0

Lhfpl6
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	162,629,806 - 162,860,113 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936565	6,115,682 - 6,344,244 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936565	6,113,917 - 6,344,153 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LHFPL6
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	3	17,724,768 - 17,981,405 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666057	26,265,229 - 26,554,843 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lhfpl6
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624748	140,383 - 407,294 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624748	139,378 - 409,093 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in LHFPL6
8274 total Variants

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	circulatory system	ectoderm	endocrine system	endoderm	hemolymphoid system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
10	4	23	3	2	5	14	12	23	3	6	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_005668366	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005668367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_005668368	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021065277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK240381	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU633712	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01100779	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000065189 ⟹ ENSSSCP00000036813

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	11	14,319,428 - 14,550,460 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000065724 ⟹ ENSSSCP00000051469

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	11	14,351,879 - 14,560,181 (-)	Ensembl

RefSeq Acc Id:

XM_005668366 ⟹ XP_005668423

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	11	14,319,420 - 14,550,142 (-)	NCBI

Sequence:

show sequence

CAGATCCACTCCTCCGCGCCAGCCCCGGCGCCCCGCGCGCGGCCACAGCGCTCCGCCCGAGCCG
CCGCCGCCGCCGGAGAGCCGCGGGCAGCGGGGGCTGCACTGGCGGCGCCGCCGCGCGTCCTCTC
GGAGCCCTCCGCCTTCCCGGCTCTTCCTCCCTCGTCGGGCCCCAGGGCTCGGCAGCTGTTAGGG
ACCGCGGCGAAGAAGGAAGGACGGTCTTCCGTGCCTTGGATGCTCTGCCGGGAGACAGCAAGTT
GAGTGTGCGTCCCGGCCCCGGGAGAAGAGGCGGCCGCCGCCCGCCAGCCATGGCCTATCATCCT
TACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTGTTCTATTGACAGACACCC
CCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTTCATACCTTCACTCACTCC
TGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTCTGGTGAAAGATGGCATCCAGTC
TGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTCCTTTGTGCTGCCACCTCCTGCGTGGG
GTTCTTCATGCCTTACTGGCTGTGGGGATCGCAGCTGGGCAAGCCCGTGTCCTTCGGTACTTTC
CGGAGGTGCTCATATCCTGTGCACGATGAGAGTCGGCAGATGATGGTGATGGTGGAGGAATGTG
GGCGCTACGCCTCCTTCCAGGGCATCCCCAGCGCAGAATGGAGGATCTGTACCATCGTGACAGG
CCTGGGCTGTGGCCTCCTCCTCCTGGTGGCGCTCACTGCCCTCATGGGCTGCTGTGTGTCGGAG
CTCATCTCCAGGACAGTGGGAAGAGTGGCTGGAGGAATTCAGTTCCTGGGGGGCTTGCTGATCG
GTGCTGGCTGCGCCCTCTACCCCCTGGGCTGGGACAGTGAGGAAGTTCGGCAGACTTGCGGCTA
CATTTCTGGCCAGTTTGACCTGGGTAAGTGTGAAATCGGCTGGGCCTACTACTGCACGGGAGCA
GGTGCTGCAGCCGCCATGCTGCTATGCACGTGGCTGGCTTGTTTCTCAGGCAAGAAACAGAAGC
AGTACCCATACTGAGATGGAGCCACCAAGAGCCAGCGGGGGAGAAGACGAGCCAAAGGGGCTAG
GAGGGACCGAAGCAGTCAGCTACTTTCAAAAGGTGGAATAGTGGTTCTACACCATACAGCACTC
ATGAAATAAAACCCAGTGGGATCAGAAACATTATACTATGTGGAAGGGTTGGGCAAGACTTTTG
AAAGAAATGTAGAGCATGGAATGGTAGAGAAAAATGGACCAAAGGCTAAAAATATTGCAGGGTG
TCGGGTATTTCTATTCTACAGAATATTGTTAATGTAGAACACATACATACACATGACAAATCTA
TATATGCAAACAAGGAATTTTTTTTTAAGGATGATGACTCAGACTCAAAAGGGCTAGTAGAAAC
AGTATTATGTTAGGAAGCAGGGTAACCCATAGACGTTCCCTGTAGGTCATGGCACTTCTGAAAG
CACACGAGCACATACAGACATACACATCCACACACATGCCATACGCAAACTATGGTGTTGCACA
GATTATACAAGAGTTTAGTGGTGCATTACTCCTCTATCTTCCTTTTAATACCCATTTAAAATAC
AGTATTATCACTTTGTAAAGCATACATTAAACCTAATAAATGGATCCATAGGCCACTCTTCCAG
TATTTTGTATATCCTGCACAAACTCTTTATGCCCTCAACACGTCTTCGGTGTTTACCTGGACCT
TTAGAATTAAGCCTTTGTATTTCAATATTATTCAAAAATATGCAATATTTCTCTGAGTAGCTTC
TGCTATGATATTCTTATGAAGTAAAGGGGCAACTTTCTGGCCTCTGTAGGAGAGAATTCAGTTG
AAGATGTGAGAGTAACGAGAGACATGTTCGGGTCATTAGATCTTGTTTCCTTTTGTCCATTATT
GTCCTGTGCTGTACCACATTTATTCCAATATCCATTTTGTAAAAAATTTAAAAGTGCTATTTTG
TTTGTATCTGAAAATCTCTGTGAATAAATTCTCTCTTTGATCAATA

hide sequence

RefSeq Acc Id:

XM_005668367 ⟹ XP_005668424

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	11	14,319,420 - 14,576,130 (-)	NCBI

Sequence:

show sequence

AAGGAAGAGAAGGGGCGGGGCAGGACTCTCGGAGCAAGAGGGGACGAGACTAACGCGCGACTTT
GCAAAATAGATTAAACTTCAGGGCAAATTTATAGAGTTTGGAGATTCCAGTTTACGGGATTAAA
AGGGCATGTGGAATCCTGAATCTTTGAAAGTTCGTGCTAGGCAGAAGTGAAACACACGGAGCCC
TGTGTCTCACAAATACGTTCGGTAAAAGTTATTTCCAGTTAAGATCACTTTAGAATACTATGCA
ACTGTTATCTGCTGTGAAGGAGATTTAAATGAGGCTGTGGAAAGAATTCCAAAATCTAGTATGT
GAAAAAAGCAAGGATGGCATTCCTGTGGAAAGGAGGTTTCCATTTTTCATTTGGTACCTTTCCA
AGCGGCCTGAAATTTTCTAATCTTCGTGTGTTGCTGAATATGTGAACAGGTTAATAAGGCTAAA
ATGAAGGTTAGGAAGCGTTCATCAAAAACCGGATGTTTATTCGCCATCTGTTCTGTTTAAGACT
CACAGGAGCTTTTGAATCAAGGAAACCAGGTCTTTCTTCCCGTCACTACACCATAATTACTTGT
TTTCTAAGCAATATCCAAGTTCACATAAGACTTGCAGTACTTTTGGATCAAAAGTAAGCGGGCC
TATCATCCTTACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTGTTCTATTGA
CAGACACCCCCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTTCATACCTTC
ACTCACTCCTGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTCTGGTGAAAGATGG
CATCCAGTCTGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTCCTTTGTGCTGCCACCTC
CTGCGTGGGGTTCTTCATGCCTTACTGGCTGTGGGGATCGCAGCTGGGCAAGCCCGTGTCCTTC
GGTACTTTCCGGAGGTGCTCATATCCTGTGCACGATGAGAGTCGGCAGATGATGGTGATGGTGG
AGGAATGTGGGCGCTACGCCTCCTTCCAGGGCATCCCCAGCGCAGAATGGAGGATCTGTACCAT
CGTGACAGGCCTGGGCTGTGGCCTCCTCCTCCTGGTGGCGCTCACTGCCCTCATGGGCTGCTGT
GTGTCGGAGCTCATCTCCAGGACAGTGGGAAGAGTGGCTGGAGGAATTCAGTTCCTGGGGGGCT
TGCTGATCGGTGCTGGCTGCGCCCTCTACCCCCTGGGCTGGGACAGTGAGGAAGTTCGGCAGAC
TTGCGGCTACATTTCTGGCCAGTTTGACCTGGGTAAGTGTGAAATCGGCTGGGCCTACTACTGC
ACGGGAGCAGGTGCTGCAGCCGCCATGCTGCTATGCACGTGGCTGGCTTGTTTCTCAGGCAAGA
AACAGAAGCAGTACCCATACTGAGATGGAGCCACCAAGAGCCAGCGGGGGAGAAGACGAGCCAA
AGGGGCTAGGAGGGACCGAAGCAGTCAGCTACTTTCAAAAGGTGGAATAGTGGTTCTACACCAT
ACAGCACTCATGAAATAAAACCCAGTGGGATCAGAAACATTATACTATGTGGAAGGGTTGGGCA
AGACTTTTGAAAGAAATGTAGAGCATGGAATGGTAGAGAAAAATGGACCAAAGGCTAAAAATAT
TGCAGGGTGTCGGGTATTTCTATTCTACAGAATATTGTTAATGTAGAACACATACATACACATG
ACAAATCTATATATGCAAACAAGGAATTTTTTTTTAAGGATGATGACTCAGACTCAAAAGGGCT
AGTAGAAACAGTATTATGTTAGGAAGCAGGGTAACCCATAGACGTTCCCTGTAGGTCATGGCAC
TTCTGAAAGCACACGAGCACATACAGACATACACATCCACACACATGCCATACGCAAACTATGG
TGTTGCACAGATTATACAAGAGTTTAGTGGTGCATTACTCCTCTATCTTCCTTTTAATACCCAT
TTAAAATACAGTATTATCACTTTGTAAAGCATACATTAAACCTAATAAATGGATCCATAGGCCA
CTCTTCCAGTATTTTGTATATCCTGCACAAACTCTTTATGCCCTCAACACGTCTTCGGTGTTTA
CCTGGACCTTTAGAATTAAGCCTTTGTATTTCAATATTATTCAAAAATATGCAATATTTCTCTG
AGTAGCTTCTGCTATGATATTCTTATGAAGTAAAGGGGCAACTTTCTGGCCTCTGTAGGAGAGA
ATTCAGTTGAAGATGTGAGAGTAACGAGAGACATGTTCGGGTCATTAGATCTTGTTTCCTTTTG
TCCATTATTGTCCTGTGCTGTACCACATTTATTCCAATATCCATTTTGTAAAAAATTTAAAAGT
GCTATTTTGTTTGTATCTGAAAATCTCTGTGAATAAATTCTCTCTTTGATCAATA

hide sequence

RefSeq Acc Id:

XM_005668368 ⟹ XP_005668425

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	11	14,319,420 - 14,550,561 (-)	NCBI

Sequence:

show sequence

AGTCGGAAACCTGAGCTTAAACCCCAAATACCAAACGCAGAAAAGCCAACAGGGAGCGTGTGTC
GTCTTCCAGCCCCCTCGGGAGCACCCGTGAGGACAAGCAACTTTCTCCCTTACTTCTCGGGCCT
ATCATCCTTACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTGTTCTATTGAC
AGACACCCCCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTTCATACCTTCA
CTCACTCCTGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTCTGGTGAAAGATGGC
ATCCAGTCTGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTCCTTTGTGCTGCCACCTCC
TGCGTGGGGTTCTTCATGCCTTACTGGCTGTGGGGATCGCAGCTGGGCAAGCCCGTGTCCTTCG
GTACTTTCCGGAGGTGCTCATATCCTGTGCACGATGAGAGTCGGCAGATGATGGTGATGGTGGA
GGAATGTGGGCGCTACGCCTCCTTCCAGGGCATCCCCAGCGCAGAATGGAGGATCTGTACCATC
GTGACAGGCCTGGGCTGTGGCCTCCTCCTCCTGGTGGCGCTCACTGCCCTCATGGGCTGCTGTG
TGTCGGAGCTCATCTCCAGGACAGTGGGAAGAGTGGCTGGAGGAATTCAGTTCCTGGGGGGCTT
GCTGATCGGTGCTGGCTGCGCCCTCTACCCCCTGGGCTGGGACAGTGAGGAAGTTCGGCAGACT
TGCGGCTACATTTCTGGCCAGTTTGACCTGGGTAAGTGTGAAATCGGCTGGGCCTACTACTGCA
CGGGAGCAGGTGCTGCAGCCGCCATGCTGCTATGCACGTGGCTGGCTTGTTTCTCAGGCAAGAA
ACAGAAGCAGTACCCATACTGAGATGGAGCCACCAAGAGCCAGCGGGGGAGAAGACGAGCCAAA
GGGGCTAGGAGGGACCGAAGCAGTCAGCTACTTTCAAAAGGTGGAATAGTGGTTCTACACCATA
CAGCACTCATGAAATAAAACCCAGTGGGATCAGAAACATTATACTATGTGGAAGGGTTGGGCAA
GACTTTTGAAAGAAATGTAGAGCATGGAATGGTAGAGAAAAATGGACCAAAGGCTAAAAATATT
GCAGGGTGTCGGGTATTTCTATTCTACAGAATATTGTTAATGTAGAACACATACATACACATGA
CAAATCTATATATGCAAACAAGGAATTTTTTTTTAAGGATGATGACTCAGACTCAAAAGGGCTA
GTAGAAACAGTATTATGTTAGGAAGCAGGGTAACCCATAGACGTTCCCTGTAGGTCATGGCACT
TCTGAAAGCACACGAGCACATACAGACATACACATCCACACACATGCCATACGCAAACTATGGT
GTTGCACAGATTATACAAGAGTTTAGTGGTGCATTACTCCTCTATCTTCCTTTTAATACCCATT
TAAAATACAGTATTATCACTTTGTAAAGCATACATTAAACCTAATAAATGGATCCATAGGCCAC
TCTTCCAGTATTTTGTATATCCTGCACAAACTCTTTATGCCCTCAACACGTCTTCGGTGTTTAC
CTGGACCTTTAGAATTAAGCCTTTGTATTTCAATATTATTCAAAAATATGCAATATTTCTCTGA
GTAGCTTCTGCTATGATATTCTTATGAAGTAAAGGGGCAACTTTCTGGCCTCTGTAGGAGAGAA
TTCAGTTGAAGATGTGAGAGTAACGAGAGACATGTTCGGGTCATTAGATCTTGTTTCCTTTTGT
CCATTATTGTCCTGTGCTGTACCACATTTATTCCAATATCCATTTTGTAAAAAATTTAAAAGTG
CTATTTTGTTTGTATCTGAAAATCTCTGTGAATAAATTCTCTCTTTGATCAATA

hide sequence

RefSeq Acc Id:

XM_021065277 ⟹ XP_020920936

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	11	14,349,264 - 14,550,160 (-)	NCBI

Sequence:

show sequence

TGCTTCGCCTGCCAAAGGCAGATCCACTCCTCCGCGCCAGCCCCGGCGCCCCGCGCGCGGCCAC
AGCGCTCCGCCCGAGCCGCCGCCGCCGCCGGAGAGCCGCGGGCAGCGGGGGCTGCACTGGCGGC
GCCGCCGCGCGTCCTCTCGGAGCCCTCCGCCTTCCCGGCTCTTCCTCCCTCGTCGGGCCCCAGG
GCTCGGCAGCTGTTAGGGACCGCGGCGAAGAAGGAAGGACGGTCTTCCGTGCCTTGGATGCTCT
GCCGGGAGACAGCAAGTTGAGTGTGCGTCCCGGCCCCGGGAGAAGAGGCGGCCGCCGCCCGCCA
GCCATGGCCTATCATCCTTACTGCAGAGGATGGGAAGCTGATGACCAGTAGGACTGAACATCTG
TTCTATTGACAGACACCCCCCTCCTCCATCACAACTGTGGATTACCTGTCGGTCCCCGTGGTTT
CATACCTTCACTCACTCCTGCAGACCCAGAACAGTGACTTTGGGTCCTCCCTGCCCTGTCTGGT
GAAAGATGGCATCCAGTCTGACTTGCACCGGGGTCATCTGGGCTCTGCTCTCGTTCCTTTGTGC
TGCCACCTCCTGCGTGGGGTTCTTCATGCCTTACTGGCTGTGGGGATCGCAGCTGGGCAAGCCC
GTGTCCTTCGGTACTTTCCGGAGGTGCTCATATCCTGTGCACGATGAGAGTCGGCAGATGATGG
TGATGGTGGAGGAATGTGGGCGCTACGCCTCCTTCCAGGGCATCCCCAGCGCAGAATGGAGGAT
CTGTACCATCGTGACAGGCCTGGGCTGTGGCCTCCTCCTCCTGGTGGCGCTCACTGCCCTCATG
GGCTGCTGTGTGTCGGAGCTCATCTCCAGGACAGTGGGAAGAGTGGCTGGAGGAATTCAGTTCC
TGGGGGGCTTGCTGATCGGTGCTGGCTGCGCCCTCTACCCCCTGGGCTGGGACAGTGAGGAAGT
TCGGCAGACTTGCGGCTACATTTCTGGCCAGTTTGACCTGGACTTCAGTGCCCTGTGTTCCTTC
CATCATGAAGCCCATGGTGTGGACAAAGGTTTATGCTGTGCAAGGTAGCAATGCTGTCTCTT

hide sequence

Protein Sequences


Protein RefSeqs	XP_005668423	(Get FASTA)	NCBI Sequence Viewer
	XP_005668424	(Get FASTA)	NCBI Sequence Viewer
	XP_005668425	(Get FASTA)	NCBI Sequence Viewer
	XP_020920936	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000036813
	ENSSSCP00000036813.1
	ENSSSCP00000051469.2
	ENSSSCP00015025532.1
	ENSSSCP00030042693.1
	ENSSSCP00030042701.1
	ENSSSCP00035012283.1
	ENSSSCP00035012284.1
	ENSSSCP00040039812.1
	ENSSSCP00040039856.1
	ENSSSCP00045011479.1
	ENSSSCP00045011497.1
	ENSSSCP00050040334.1
	ENSSSCP00050040335.1
	ENSSSCP00050040338.1
	ENSSSCP00055041112.1
	ENSSSCP00055041147.1
	ENSSSCP00060025371.1
	ENSSSCP00060025374.1
	ENSSSCP00065008165.1
	ENSSSCP00065008168.1
	ENSSSCP00070005460.1
	ENSSSCP00070005465.1
	ENSSSCP00070005467.1
	ENSSSCP00070005472.1

RefSeq Acc Id:	XP_005668424 ⟸ XM_005668367
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1SSV3 (UniProtKB/TrEMBL), I3LUK7 (UniProtKB/TrEMBL), A0A8D1TNE7 (UniProtKB/TrEMBL), A0A8D1H1F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVM VEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSELISRTVGRVAGGIQFLG GLLIGAGCALYPLGWDSEEVRQTCGYISGQFDLGKCEIGWAYYCTGAGAAAAMLLCTWLACFSG KKQKQYPY hide sequence

RefSeq Acc Id:	XP_005668425 ⟸ XM_005668368
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1SSV3 (UniProtKB/TrEMBL), I3LUK7 (UniProtKB/TrEMBL), A0A8D1TNE7 (UniProtKB/TrEMBL), A0A8D1H1F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVM VEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSELISRTVGRVAGGIQFLG GLLIGAGCALYPLGWDSEEVRQTCGYISGQFDLGKCEIGWAYYCTGAGAAAAMLLCTWLACFSG KKQKQYPY hide sequence

RefSeq Acc Id:	XP_005668423 ⟸ XM_005668366
- Peptide Label:	isoform X1
- UniProtKB:	A0A4X1SSV3 (UniProtKB/TrEMBL), I3LUK7 (UniProtKB/TrEMBL), A0A8D1TNE7 (UniProtKB/TrEMBL), A0A8D1H1F9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVM VEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSELISRTVGRVAGGIQFLG GLLIGAGCALYPLGWDSEEVRQTCGYISGQFDLGKCEIGWAYYCTGAGAAAAMLLCTWLACFSG KKQKQYPY hide sequence

RefSeq Acc Id:	XP_020920936 ⟸ XM_021065277
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D1TNE7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MASSLTCTGVIWALLSFLCAATSCVGFFMPYWLWGSQLGKPVSFGTFRRCSYPVHDESRQMMVM VEECGRYASFQGIPSAEWRICTIVTGLGCGLLLLVALTALMGCCVSELISRTVGRVAGGIQFLG GLLIGAGCALYPLGWDSEEVRQTCGYISGQFDLDFSALCSFHHEAHGVDKGLCCAR hide sequence

Ensembl Acc Id:

ENSSSCP00000036813 ⟸ ENSSSCT00000065189

Ensembl Acc Id:

ENSSSCP00000051469 ⟸ ENSSSCT00000065724

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000029855	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00015047836	UniProtKB/TrEMBL
	ENSSSCG00030066405	UniProtKB/TrEMBL
	ENSSSCG00035023901	UniProtKB/TrEMBL
	ENSSSCG00040066319	UniProtKB/TrEMBL
	ENSSSCG00045009838	UniProtKB/TrEMBL
	ENSSSCG00050068495	UniProtKB/TrEMBL
	ENSSSCG00055026039	UniProtKB/TrEMBL
	ENSSSCG00060043680	UniProtKB/TrEMBL
	ENSSSCG00065015111	UniProtKB/TrEMBL
	ENSSSCG00070003566	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000065189	ENTREZGENE
	ENSSSCT00000065189.3	UniProtKB/TrEMBL
	ENSSSCT00000065724.3	UniProtKB/TrEMBL
	ENSSSCT00015063763.1	UniProtKB/TrEMBL
	ENSSSCT00030092778.1	UniProtKB/TrEMBL
	ENSSSCT00030092794.1	UniProtKB/TrEMBL
	ENSSSCT00035031367.1	UniProtKB/TrEMBL
	ENSSSCT00035031371.1	UniProtKB/TrEMBL
	ENSSSCT00040090548.1	UniProtKB/TrEMBL
	ENSSSCT00040090624.1	UniProtKB/TrEMBL
	ENSSSCT00045016642.1	UniProtKB/TrEMBL
	ENSSSCT00045016668.1	UniProtKB/TrEMBL
	ENSSSCT00050093473.1	UniProtKB/TrEMBL
	ENSSSCT00050093474.1	UniProtKB/TrEMBL
	ENSSSCT00050093479.1	UniProtKB/TrEMBL
	ENSSSCT00055051435.1	UniProtKB/TrEMBL
	ENSSSCT00055051481.1	UniProtKB/TrEMBL
	ENSSSCT00060059233.1	UniProtKB/TrEMBL
	ENSSSCT00060059237.1	UniProtKB/TrEMBL
	ENSSSCT00065020066.1	UniProtKB/TrEMBL
	ENSSSCT00065020073.1	UniProtKB/TrEMBL
	ENSSSCT00070006694.1	UniProtKB/TrEMBL
	ENSSSCT00070006699.1	UniProtKB/TrEMBL
	ENSSSCT00070006701.1	UniProtKB/TrEMBL
	ENSSSCT00070006708.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.140.150	UniProtKB/TrEMBL
InterPro	LHFPL	UniProtKB/TrEMBL
NCBI Gene	LHFPL6	ENTREZGENE
PANTHER	LHFPL TETRASPAN SUBFAMILY MEMBER 6 PROTEIN	UniProtKB/TrEMBL
	PTHR12489	UniProtKB/TrEMBL
Pfam	L_HMGIC_fpl	UniProtKB/TrEMBL
UniProt	A0A287B4R0_PIG	UniProtKB/TrEMBL
	A0A4X1SSV3	ENTREZGENE
	A0A8D0ZAA4_PIG	UniProtKB/TrEMBL
	A0A8D1H1F9	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1TNE7	ENTREZGENE, UniProtKB/TrEMBL
	I3LUK7	ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary	A0A4X1SSV3	UniProtKB/TrEMBL
VGNC ID	VGNC:89709	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD