RPRD2 (regulation of nuclear pre-mRNA domain containing 2) - Rat Genome Database

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Gene: RPRD2 (regulation of nuclear pre-mRNA domain containing 2) Sus scrofa
Analyze
Symbol: RPRD2
Name: regulation of nuclear pre-mRNA domain containing 2
RGD ID: 13968761
Description: ENCODES a protein that exhibits RNA polymerase II C-terminal domain binding (inferred); RNA polymerase II complex binding (inferred); INVOLVED IN mRNA 3'-end processing (inferred); ASSOCIATED WITH gastrointestinal stromal tumor (ortholog); genetic disease (ortholog); immunodeficiency 42 (ortholog); FOUND IN transcription preinitiation complex (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: regulation of nuclear pre-mRNA domain-containing protein 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,640,930 - 98,734,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,640,925 - 98,734,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,928,706 - 108,022,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
RPRD2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl498,640,930 - 98,734,297 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1498,640,925 - 98,734,606 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24107,928,706 - 108,022,237 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RPRD2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381150,364,147 - 150,476,566 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1150,363,091 - 150,476,566 (+)EnsemblGRCh38hg38GRCh38
GRCh371150,336,623 - 150,449,042 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361148,603,211 - 148,712,674 (+)NCBINCBI36Build 36hg18NCBI36
Celera1123,452,749 - 123,564,816 (+)NCBICelera
Cytogenetic Map1q21.2NCBI
HuRef1121,715,729 - 121,827,556 (+)NCBIHuRef
CHM1_11151,732,629 - 151,844,644 (+)NCBICHM1_1
T2T-CHM13v2.01149,489,227 - 149,601,428 (+)NCBIT2T-CHM13v2.0
Rprd2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39395,667,183 - 95,727,034 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl395,667,653 - 95,726,175 (-)EnsemblGRCm39 Ensembl
GRCm38395,759,871 - 95,819,744 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl395,760,341 - 95,818,863 (-)EnsemblGRCm38mm10GRCm38
MGSCv37395,563,796 - 95,622,876 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36395,845,278 - 95,904,358 (-)NCBIMGSCv36mm8
MGSCv36396,045,207 - 96,104,288 (-)NCBIMGSCv36mm8
Celera397,192,947 - 97,252,032 (-)NCBICelera
Cytogenetic Map3F2.1NCBI
cM Map341.0NCBI
Rprd2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82186,000,375 - 186,056,943 (-)NCBIGRCr8
mRatBN7.22183,311,132 - 183,367,959 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2183,293,114 - 183,367,407 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.02197,882,666 - 197,937,844 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2197,886,160 - 197,935,567 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02217,389,741 - 217,405,207 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Rnor_5.02217,372,608 - 217,384,382 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera2175,844,701 - 175,899,484 (-)NCBICelera
Cytogenetic Map2q34NCBI
Rprd2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955413324,873 - 419,347 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955413321,707 - 420,626 (-)NCBIChiLan1.0ChiLan1.0
RPRD2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2199,361,749 - 99,474,467 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1199,115,623 - 99,228,369 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01125,709,535 - 125,821,872 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11129,359,202 - 129,469,899 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1129,359,202 - 129,469,899 (+)Ensemblpanpan1.1panPan2
RPRD2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11759,587,157 - 59,676,885 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1759,587,157 - 59,672,964 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1759,033,321 - 59,122,599 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01760,602,597 - 60,691,959 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1760,602,014 - 60,691,954 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11759,433,343 - 59,522,397 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01759,516,710 - 59,606,178 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01760,244,550 - 60,333,836 (+)NCBIUU_Cfam_GSD_1.0
Rprd2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505821,615,971 - 21,695,695 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936580646,347 - 722,691 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936580646,353 - 723,045 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPRD2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_02366603812,815,110 - 12,928,300 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rprd2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477218,107,317 - 18,212,239 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462477218,107,235 - 18,215,996 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in RPRD2
1868 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 4 2 3 4 9 1 2 1
Low 6 2 1 2 14 1 1 2
Below cutoff

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000022559   ⟹   ENSSSCP00000023087
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,644,019 - 98,734,297 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000049663   ⟹   ENSSSCP00000038612
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,640,930 - 98,676,661 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000064242   ⟹   ENSSSCP00000051945
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl498,640,930 - 98,734,296 (-)Ensembl
RefSeq Acc Id: XM_003355198   ⟹   XP_003355246
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,641,628 - 98,734,603 (-)NCBI
Sequence:
RefSeq Acc Id: XM_003355199   ⟹   XP_003355247
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,640,925 - 98,734,605 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013988087   ⟹   XP_013843541
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,640,925 - 98,734,606 (-)NCBI
Sequence:
RefSeq Acc Id: XM_013988089   ⟹   XP_013843543
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,640,925 - 98,734,603 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089901   ⟹   XP_020945560
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,644,014 - 98,678,555 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089902   ⟹   XP_020945561
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,644,014 - 98,733,321 (-)NCBI
Sequence:
RefSeq Acc Id: XM_021089903   ⟹   XP_020945562
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1498,640,925 - 98,670,179 (-)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_013843541   ⟸   XM_013988087
- Peptide Label: isoform X2
- UniProtKB: A0A8D0IFV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003355247   ⟸   XM_003355199
- Peptide Label: isoform X3
- UniProtKB: I3LG94 (UniProtKB/TrEMBL),   A0A4X1SGJ4 (UniProtKB/TrEMBL),   A0A8D0IFV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_013843543   ⟸   XM_013988089
- Peptide Label: isoform X7
- Sequence:
RefSeq Acc Id: XP_020945562   ⟸   XM_021089903
- Peptide Label: isoform X6
- UniProtKB: A0A287A4B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_003355246   ⟸   XM_003355198
- Peptide Label: isoform X1
- UniProtKB: A0A287B756 (UniProtKB/TrEMBL),   A0A4X1SGH1 (UniProtKB/TrEMBL),   A0A8D0IFV5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945561   ⟸   XM_021089902
- Peptide Label: isoform X5
- UniProtKB: A0A8D1EAY9 (UniProtKB/TrEMBL),   A0A287A4B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020945560   ⟸   XM_021089901
- Peptide Label: isoform X4
- UniProtKB: A0A287A4B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000051945   ⟸   ENSSSCT00000064242
RefSeq Acc Id: ENSSSCP00000038612   ⟸   ENSSSCT00000049663
RefSeq Acc Id: ENSSSCP00000023087   ⟸   ENSSSCT00000022559
Protein Domains
CID


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030291 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00005014314 UniProtKB/TrEMBL
  ENSSSCG00015001105 UniProtKB/TrEMBL
  ENSSSCG00025060662 UniProtKB/TrEMBL
  ENSSSCG00030054285 UniProtKB/TrEMBL
  ENSSSCG00035055297 UniProtKB/TrEMBL
  ENSSSCG00040032346 UniProtKB/TrEMBL
  ENSSSCG00045017160 UniProtKB/TrEMBL
  ENSSSCG00050077296 UniProtKB/TrEMBL
  ENSSSCG00055026730 UniProtKB/TrEMBL
  ENSSSCG00060020087 UniProtKB/TrEMBL
  ENSSSCG00065070685 UniProtKB/TrEMBL
  ENSSSCG00070000826 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000022559 ENTREZGENE
  ENSSSCT00000022559.4 UniProtKB/TrEMBL
  ENSSSCT00000049663.3 UniProtKB/TrEMBL
  ENSSSCT00000064242 ENTREZGENE
  ENSSSCT00000064242.2 UniProtKB/TrEMBL
  ENSSSCT00005022752.1 UniProtKB/TrEMBL
  ENSSSCT00015001299.1 UniProtKB/TrEMBL
  ENSSSCT00015001332.1 UniProtKB/TrEMBL
  ENSSSCT00015001351.1 UniProtKB/TrEMBL
  ENSSSCT00025083067.1 UniProtKB/TrEMBL
  ENSSSCT00025083258.1 UniProtKB/TrEMBL
  ENSSSCT00025083495.1 UniProtKB/TrEMBL
  ENSSSCT00030075669.1 UniProtKB/TrEMBL
  ENSSSCT00030075697.1 UniProtKB/TrEMBL
  ENSSSCT00030075712.1 UniProtKB/TrEMBL
  ENSSSCT00035073748.1 UniProtKB/TrEMBL
  ENSSSCT00035073754.1 UniProtKB/TrEMBL
  ENSSSCT00035073759.1 UniProtKB/TrEMBL
  ENSSSCT00040043561.1 UniProtKB/TrEMBL
  ENSSSCT00040043619.1 UniProtKB/TrEMBL
  ENSSSCT00040043678.1 UniProtKB/TrEMBL
  ENSSSCT00045029202.1 UniProtKB/TrEMBL
  ENSSSCT00045029284.1 UniProtKB/TrEMBL
  ENSSSCT00045029337.1 UniProtKB/TrEMBL
  ENSSSCT00050106375.1 UniProtKB/TrEMBL
  ENSSSCT00050106387.1 UniProtKB/TrEMBL
  ENSSSCT00050106404.1 UniProtKB/TrEMBL
  ENSSSCT00055052904.1 UniProtKB/TrEMBL
  ENSSSCT00055052961.1 UniProtKB/TrEMBL
  ENSSSCT00055053036.1 UniProtKB/TrEMBL
  ENSSSCT00060027159.1 UniProtKB/TrEMBL
  ENSSSCT00060027163.1 UniProtKB/TrEMBL
  ENSSSCT00060027166.1 UniProtKB/TrEMBL
  ENSSSCT00065097152.1 UniProtKB/TrEMBL
  ENSSSCT00065097157.1 UniProtKB/TrEMBL
  ENSSSCT00065097163.1 UniProtKB/TrEMBL
  ENSSSCT00070001612.1 UniProtKB/TrEMBL
  ENSSSCT00070001622.1 UniProtKB/TrEMBL
Gene3D-CATH 1.25.40.90 UniProtKB/TrEMBL
  6.10.250.2560 UniProtKB/TrEMBL
InterPro CID_dom UniProtKB/TrEMBL
  ENTH_VHS UniProtKB/TrEMBL
  RPRD2_CID UniProtKB/TrEMBL
KEGG Report ssc:100620276 UniProtKB/TrEMBL
NCBI Gene RPRD2 ENTREZGENE
PANTHER CYCLIN-DEPENDENT KINASE INHIBITOR-RELATED PROTEIN UniProtKB/TrEMBL
  REGULATION OF NUCLEAR PRE-MRNA DOMAIN-CONTAINING PROTEIN 2 UniProtKB/TrEMBL
Pfam CTD_bind UniProtKB/TrEMBL
PROSITE CID UniProtKB/TrEMBL
SMART RPR UniProtKB/TrEMBL
Superfamily-SCOP SSF48464 UniProtKB/TrEMBL
UniProt A0A287A4B8 ENTREZGENE, UniProtKB/TrEMBL
  A0A287B756 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGH1 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SGJ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0IFV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1EAY9 ENTREZGENE, UniProtKB/TrEMBL
  I3LG94 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:92436 ENTREZGENE