Symbol:
GPATCH4
Name:
G-patch domain containing 4
RGD ID:
13963919
Description:
ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred); INTERACTS WITH deoxynivalenol
Type:
protein-coding
RefSeq Status:
VALIDATED
Previously known as:
G patch domain-containing protein 4; G-patch domain containing 4 (gene/pseudogene)
RGD Orthologs
Alliance Orthologs
More Info
more info ...
More Info
Latest Assembly:
Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 93,486,380 - 93,494,829 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 93,486,365 - 93,492,837 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 102,292,221 - 102,298,726 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
JBrowse:
View Region in Genome Browser (JBrowse)
Model
GPATCH4 (Sus scrofa - pig)
Pig Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl Sscrofa11.1 Ensembl 4 93,486,380 - 93,494,829 (+) Ensembl Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa11.1 4 93,486,365 - 93,492,837 (+) NCBI Sscrofa11.1 Sscrofa11.1 susScr11 Sscrofa11.1 Sscrofa10.2 4 102,292,221 - 102,298,726 (-) NCBI Sscrofa10.2 Sscrofa10.2 susScr3
GPATCH4 (Homo sapiens - human)
Human Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCh38 1 156,594,301 - 156,601,479 (-) NCBI GRCh38 GRCh38 hg38 GRCh38 GRCh38.p14 Ensembl 1 156,594,301 - 156,601,496 (-) Ensembl GRCh38 hg38 GRCh38 GRCh37 1 156,564,093 - 156,571,271 (-) NCBI GRCh37 GRCh37 hg19 GRCh37 Build 36 1 154,830,903 - 154,837,894 (-) NCBI NCBI36 Build 36 hg18 NCBI36 Celera 1 129,635,069 - 129,642,064 (-) NCBI Celera Cytogenetic Map 1 q22-q23.1 NCBI HuRef 1 127,921,779 - 127,928,962 (-) NCBI HuRef CHM1_1 1 157,960,290 - 157,967,473 (-) NCBI CHM1_1 T2T-CHM13v2.0 1 155,730,677 - 155,737,859 (-) NCBI T2T-CHM13v2.0
Gpatch4 (Mus musculus - house mouse)
Mouse Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCm39 3 87,950,413 - 87,963,301 (+) NCBI GRCm39 GRCm39 mm39 GRCm39 Ensembl 3 87,950,415 - 87,963,300 (+) Ensembl GRCm39 Ensembl GRCm38 3 88,043,106 - 88,055,994 (+) NCBI GRCm38 GRCm38 mm10 GRCm38 GRCm38.p6 Ensembl 3 88,043,108 - 88,055,993 (+) Ensembl GRCm38 mm10 GRCm38 MGSCv37 3 87,847,030 - 87,859,915 (+) NCBI GRCm37 MGSCv37 mm9 NCBIm37 MGSCv36 3 88,129,051 - 88,141,915 (+) NCBI MGSCv36 mm8 Celera 3 88,082,289 - 88,095,511 (+) NCBI Celera Cytogenetic Map 3 F1 NCBI cM Map 3 38.78 NCBI
Gpatch4 (Rattus norvegicus - Norway rat)
Rat Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl GRCr8 2 175,797,503 - 175,816,547 (+) NCBI GRCr8 mRatBN7.2 2 173,499,700 - 173,520,346 (+) NCBI mRatBN7.2 mRatBN7.2 mRatBN7.2 Ensembl 2 173,509,897 - 173,518,684 (+) Ensembl mRatBN7.2 Ensembl UTH_Rnor_SHR_Utx 2 180,654,760 - 180,663,505 (+) NCBI Rnor_SHR UTH_Rnor_SHR_Utx UTH_Rnor_SHRSP_BbbUtx_1.0 2 178,677,121 - 178,685,866 (+) NCBI Rnor_SHRSP UTH_Rnor_SHRSP_BbbUtx_1.0 UTH_Rnor_WKY_Bbb_1.0 2 173,277,281 - 173,286,062 (+) NCBI Rnor_WKY UTH_Rnor_WKY_Bbb_1.0 Rnor_6.0 2 187,404,731 - 187,424,047 (+) NCBI Rnor6.0 Rnor_6.0 rn6 Rnor6.0 Rnor_6.0 Ensembl 2 187,415,262 - 187,424,045 (+) Ensembl Rnor6.0 rn6 Rnor6.0 Rnor_5.0 2 206,818,279 - 206,827,064 (+) NCBI Rnor5.0 Rnor_5.0 rn5 Rnor5.0 RGSC_v3.4 2 180,123,437 - 180,132,225 (+) NCBI RGSC3.4 RGSC_v3.4 rn4 RGSC3.4 RGSC_v3.1 2 180,073,542 - 180,082,329 (+) NCBI Celera 2 167,457,155 - 167,465,940 (+) NCBI Celera Cytogenetic Map 2 q34 NCBI
Gpatch4 (Chinchilla lanigera - long-tailed chinchilla)
Chinchilla Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChiLan1.0 Ensembl NW_004955545 2,685,568 - 2,693,133 (-) Ensembl ChiLan1.0 ChiLan1.0 NW_004955545 2,684,827 - 2,694,733 (-) NCBI ChiLan1.0 ChiLan1.0
LOC100972613 (Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl NHGRI_mPanPan1-v2 1 93,242,644 - 93,249,617 (+) NCBI NHGRI_mPanPan1-v2 NHGRI_mPanPan1 1 92,977,164 - 92,984,652 (+) NCBI NHGRI_mPanPan1 Mhudiblu_PPA_v0 1 131,938,622 - 131,945,524 (-) NCBI Mhudiblu_PPA_v0 Mhudiblu_PPA_v0 panPan3 PanPan1.1 1 135,761,604 - 135,768,639 (-) NCBI panpan1.1 PanPan1.1 panPan2 PanPan1.1 Ensembl 1 135,760,273 - 135,768,573 (-) Ensembl panpan1.1 panPan2
GPATCH4 (Canis lupus familiaris - dog)
Dog Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl CanFam3.1 7 41,359,986 - 41,367,085 (+) NCBI CanFam3.1 CanFam3.1 canFam3 CanFam3.1 CanFam3.1 Ensembl 7 41,360,575 - 41,366,665 (+) Ensembl CanFam3.1 canFam3 CanFam3.1 Dog10K_Boxer_Tasha 7 40,847,427 - 40,854,618 (+) NCBI Dog10K_Boxer_Tasha ROS_Cfam_1.0 7 41,223,025 - 41,230,467 (+) NCBI ROS_Cfam_1.0 UMICH_Zoey_3.1 7 41,004,893 - 41,012,121 (+) NCBI UMICH_Zoey_3.1 UNSW_CanFamBas_1.0 7 41,057,924 - 41,065,361 (+) NCBI UNSW_CanFamBas_1.0 UU_Cfam_GSD_1.0 7 41,341,593 - 41,349,034 (+) NCBI UU_Cfam_GSD_1.0
Gpatch4 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl HiC_Itri_2 NW_024405058 26,742,341 - 26,751,250 (-) NCBI HiC_Itri_2 SpeTri2.0 Ensembl NW_004936580 5,769,541 - 5,781,325 (-) Ensembl SpeTri2.0 SpeTri2.0 Ensembl SpeTri2.0 NW_004936580 5,773,076 - 5,781,288 (-) NCBI SpeTri2.0 SpeTri2.0 SpeTri2.0
GPATCH4 (Chlorocebus sabaeus - green monkey)
Green Monkey Assembly Chr Position (strand) Source Genome Browsers JBrowse NCBI UCSC Ensembl ChlSab1.1 20 7,260,385 - 7,268,112 (+) NCBI ChlSab1.1 ChlSab1.1 chlSab2 ChlSab1.1 Ensembl 20 7,262,763 - 7,270,442 (+) Ensembl ChlSab1.1 ChlSab1.1 Ensembl chlSab2 Vero_WHO_p1.0 NW_023666038 6,556,774 - 6,564,085 (+) NCBI Vero_WHO_p1.0 Vero_WHO_p1.0
Gpatch4 (Heterocephalus glaber - naked mole-rat)
.
Click on a value in the shaded box below the category label to view a detailed expression data table for that system.
alimentary part of gastrointestinal system
10
4
23
3
2
5
14
12
23
3
6
3
Too many to show, limit is 500. Download them if you would like to view them all.
Ensembl Acc Id:
ENSSSCT00000007099 ⟹ ENSSSCP00000006907
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 Ensembl 4 93,486,380 - 93,494,829 (+) Ensembl
RefSeq Acc Id:
NM_001243353 ⟹ NP_001230282
RefSeq Status:
VALIDATED
Type:
CODING
Position:
Pig Assembly Chr Position (strand) Source Sscrofa11.1 4 93,486,365 - 93,492,837 (+) NCBI
Sequence:
CGCACTTCCGGGAAGATGGCGGCGCGCAAGATGTCGCTGGCATGTGTTTTTGCGGAGAGGACCTTGCAAATGACGGGATGACTGTGAACTCCTCTTCTCTGGTGAGGGGCTGAGGACAGTGACTCTTT TCTCACCATGAGTGTCACCCCAGAGGTCAAGAGTCGTGGGATGAAGTTTGCTGAGGAGCAGCTGCTAAAGCATGGATGGACTCAAGGCAAAGGCCTGGGCCGGAAGGAGAACGGTATCACCCAGGCCC TCAGGGTGACACTGAAGCAGGACACTCATGGGGTGGGACACGACCCTGCCAAGGAGTTCACAAACCACTGGTGGAATGAGCTCTTCAACAAGACAGCAGCCAGCTTGGTAGTGGAAACAGGACGGGAT GGAGTCCAGATCAGGCACCTGGCTAAGGAGACCACCCGTCATAATCAGCCCAAGCCCAACCTGCTGTATCAAAAGTTTGTGAAGACGGCCACACTGACTTCAAGTGGGGAGAAGCCAGACAAGGATTT GGAAAGCTGTGGTGATGACAACAGCCAGGAGCCCAAGCCTCCAAAGATTCTGACCGATGAGATGCTGCTCCAAGCCTGTGAGGGGCGAACAGCACACAAGGCTGCCCGTCATGGGATCACCATGAAGG CTAAGCTGGCTCGGTTGGAGGCTCAGGAGCAGGCCTTCCTGGCTCGTCTCAAAGGCCAGGACTCTGGGACCCCTCAGCTGCAGTCTGAGAGCAAGCCCCCCAAAAAAAAGAAAAAGAAGAGGAAGCAG AAAGAGGAGGAAGAGGCTGCCACTGAACAGAGTGCAGAAGAGCACCCAGAACGCACCGACCAGAGCACCAGGAAAAGCAAAAAGAAGAAAAGATGGCATCAAGAAGCAAAGGTCACAGATGAGATGGA GGCAGCAGCTGTAGGGAGTGAGGAAGAAGAGGCCACAGGACCAAGTGGGCTTGGGGAGTTAAAGACCAGGGAACAGTTTGATCAGTCCCTCAGGAAAAGGAAGAAGAAGAGGTGGCACTATGAAGAGG AGAAGGTGGAGGCCTTAGATAAAGGAGGAGGAGGTGTCAGGACAGAGGAGGACACAGACCGAGGCAGCAGGGGCAGGAAGAGGCGGCAGCATGAGGAAGAAGACCTGAACACAGAGGCTGAAGAAGCC GAGGAGGCTGCTGAAGACGGTGGGACCAGAAAAAAAGAAAGCAGAACCTGCAGTGATCAGAAAAGCAAGAGGAGCAAGAAGAAGAGACAGCAGCATCAAGAGGAAGAGGAGGGTGTCTTGGATGTGGG TGAGGCGGATGGCAGGACTAGGGCAGCAGAGAGTGGGGCATGTACTGGCTCAGGCGGCAGAAGTAAGAAGAGGCAGCAGCAACCGGAGGAGGAAAGACCCAAAGTCAGCACTGACCGGAGAGCCAAAA AGAAGAAACAGAAGAAGAGAGACTGAAGGCCACACCAAGGTGGGGTTTGAGTGATTCCGTTTTAGGAGTGGAAGCCTCGGAGGCCTGAGTTGGCATGGGTCTTCTGCATCCTTTCCGTGAGGAGTCCC TCCCAAGGAGGGAACAGCTCTAACAGCTCTGAACAGCTGTCCACTGAGACGAGAGTGGTCGTGCCATGTCTGAGTTGAAGGAGCAGCCACATCTCCCTTACAGCTTGTAACCCAGATGTCATGAACTC AACTGGCTGCAGGAGCCAGGCAGCTAAGGGACAGGGATGCTGGGGGCTCTGGGAACAGGAACACAGATACCCCCTGAAGGGACATCTTTGCAAAAAGAAGCTGAAAATGTAGACTTACAGCAAATGTA CTGATTTTTAAATACTGTGAAGGCTAAGGAGAACATACAGATTCAGCTCCTAGGTTGCTAGTTTCTAACACTATACCAAGTGGTTGAATAAACCTCACCTTGGGCTCTTAAAAAAAAAAAAAAAAAAA AAAA
hide sequence
RefSeq Acc Id:
NP_001230282 ⟸ NM_001243353
- UniProtKB:
F1RP33 (UniProtKB/TrEMBL), A0A4X1VYN3 (UniProtKB/TrEMBL), A0A480YWX2 (UniProtKB/TrEMBL)
- Sequence:
MSVTPEVKSRGMKFAEEQLLKHGWTQGKGLGRKENGITQALRVTLKQDTHGVGHDPAKEFTNHWWNELFNKTAASLVVETGRDGVQIRHLAKETTRHNQPKPNLLYQKFVKTATLTSSGEKPDKDLES CGDDNSQEPKPPKILTDEMLLQACEGRTAHKAARHGITMKAKLARLEAQEQAFLARLKGQDSGTPQLQSESKPPKKKKKKRKQKEEEEAATEQSAEEHPERTDQSTRKSKKKKRWHQEAKVTDEMEAA AVGSEEEEATGPSGLGELKTREQFDQSLRKRKKKRWHYEEEKVEALDKGGGGVRTEEDTDRGSRGRKRRQHEEEDLNTEAEEAEEAAEDGGTRKKESRTCSDQKSKRSKKKRQQHQEEEEGVLDVGEA DGRTRAAESGACTGSGGRSKKRQQQPEEERPKVSTDRRAKKKKQKKRD
hide sequence
Ensembl Acc Id:
ENSSSCP00000006907 ⟸ ENSSSCT00000007099
Date
Current Symbol
Current Name
Previous Symbol
Previous Name
Description
Reference
Status
2022-03-28
GPATCH4
G-patch domain containing 4
GPATCH4
G-patch domain containing 4 (gene/pseudogene)
Symbol and/or name change
19259463
PROVISIONAL
2021-11-01
GPATCH4
G-patch domain containing 4 (gene/pseudogene)
GPATCH4
G-patch domain containing 4
Symbol and/or name change
19259463
PROVISIONAL