GPATCH4 (G-patch domain containing 4) - Rat Genome Database

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Gene: GPATCH4 (G-patch domain containing 4) Sus scrofa
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Symbol: GPATCH4
Name: G-patch domain containing 4
RGD ID: 13963919
Description: ENCODES a protein that exhibits nucleic acid binding (inferred); INVOLVED IN hematopoietic progenitor cell differentiation (inferred); ASSOCIATED WITH Charcot-Marie-Tooth disease type 2 (ortholog); gastrointestinal stromal tumor (ortholog); immunodeficiency 42 (ortholog); FOUND IN nucleolus (inferred); nucleoplasm (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: G patch domain-containing protein 4; G-patch domain containing 4 (gene/pseudogene)
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,486,380 - 93,494,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,486,365 - 93,492,837 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,292,221 - 102,298,726 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GPATCH4PigCharcot-Marie-Tooth disease type 2  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Charcot-Marie-Tooth disease type 2ClinVarPMID:18585512 more ...
GPATCH4Piggastrointestinal stromal tumor  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Gastrointestinal stromal tumorClinVarPMID:28492532
GPATCH4Pigimmunodeficiency 42  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Autosomal recessive mendelian susceptibility to mycobacterial diseases due to complete RORgamma receptor deficiencyClinVarPMID:28492532
GPATCH4PigMHC class II deficiency  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: MHC class II deficiencyClinVarPMID:28492532
GPATCH4Pigparathyroid carcinoma  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Parathyroid carcinomaClinVarPMID:28492532
GPATCH4Pigsevere congenital neutropenia 3  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Kostmann syndromeClinVarPMID:28492532
GPATCH4Pigsevere congenital neutropenia 5  ISOGPATCH4 (Homo sapiens)8554872ClinVar Annotator: match by term: Congenital neutropenia-myelofibrosis-nephromegaly syndromeClinVarPMID:28492532


  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GPATCH4Pigdeoxynivalenol increases expressionEXP 6480464deoxynivalenol results in increased expression of GPATCH4 mRNACTDPMID:35307453


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GPATCH4Pighematopoietic progenitor cell differentiation acts_upstream_of_or_withinIEAUniProtKB:Q3TFK5 and ensembl:ENSMUSP00000141786150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GPATCH4Pignucleolus located_inIEAUniProtKB:A0A0A0MRK1 and ensembl:ENSP00000357215150520179 EnsemblGO_REF:0000107
GPATCH4Pignucleolus is_active_inIBAPANTHER:PTN000567695 more ...150520179 GO_CentralGO_REF:0000033
GPATCH4Pignucleoplasm located_inIEAUniProtKB:A0A0A0MRK1 and ensembl:ENSP00000357215150520179 EnsemblGO_REF:0000107

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
GPATCH4Pignucleic acid binding enablesIEAInterPro:IPR000467150520179 InterProGO_REF:0000002
GPATCH4Pigprotein binding enablesISOUniProtKB:Q8N6L0 and UniProtKB:Q8NHQ19068941 PMID:25416956 and PMID:32296183IntActPMID:25416956 and PMID:32296183

PMID:14681463   PMID:17145712   PMID:17407547   PMID:22301074   PMID:30032202  



GPATCH4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl493,486,380 - 93,494,829 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1493,486,365 - 93,492,837 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24102,292,221 - 102,298,726 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GPATCH4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,594,301 - 156,601,479 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,594,301 - 156,601,496 (-)EnsemblGRCh38hg38GRCh38
GRCh371156,564,093 - 156,571,271 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361154,830,903 - 154,837,894 (-)NCBINCBI36Build 36hg18NCBI36
Celera1129,635,069 - 129,642,064 (-)NCBICelera
Cytogenetic Map1q22-q23.1NCBI
HuRef1127,921,779 - 127,928,962 (-)NCBIHuRef
CHM1_11157,960,290 - 157,967,473 (-)NCBICHM1_1
T2T-CHM13v2.01155,730,677 - 155,737,859 (-)NCBIT2T-CHM13v2.0
Gpatch4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39387,950,413 - 87,963,301 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl387,950,415 - 87,963,300 (+)EnsemblGRCm39 Ensembl
GRCm38388,043,106 - 88,055,994 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl388,043,108 - 88,055,993 (+)EnsemblGRCm38mm10GRCm38
MGSCv37387,847,030 - 87,859,915 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36388,129,051 - 88,141,915 (+)NCBIMGSCv36mm8
Celera388,082,289 - 88,095,511 (+)NCBICelera
Cytogenetic Map3F1NCBI
cM Map338.78NCBI
Gpatch4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr82175,797,503 - 175,816,547 (+)NCBIGRCr8
mRatBN7.22173,499,700 - 173,520,346 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl2173,509,897 - 173,518,684 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx2180,654,760 - 180,663,505 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.02178,677,121 - 178,685,866 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.02173,277,281 - 173,286,062 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.02187,404,731 - 187,424,047 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl2187,415,262 - 187,424,045 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02206,818,279 - 206,827,064 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.42180,123,437 - 180,132,225 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.12180,073,542 - 180,082,329 (+)NCBI
Celera2167,457,155 - 167,465,940 (+)NCBICelera
Cytogenetic Map2q34NCBI
Gpatch4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555452,685,568 - 2,693,133 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555452,684,827 - 2,694,733 (-)NCBIChiLan1.0ChiLan1.0
LOC100972613
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2193,242,644 - 93,249,617 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1192,977,164 - 92,984,652 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01131,938,622 - 131,945,524 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11135,761,604 - 135,768,639 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1135,760,273 - 135,768,573 (-)Ensemblpanpan1.1panPan2
GPATCH4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1741,359,986 - 41,367,085 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl741,360,575 - 41,366,665 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha740,847,427 - 40,854,618 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0741,223,025 - 41,230,467 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1741,004,893 - 41,012,121 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0741,057,924 - 41,065,361 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0741,341,593 - 41,349,034 (+)NCBIUU_Cfam_GSD_1.0
Gpatch4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505826,742,341 - 26,751,250 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365805,769,541 - 5,781,325 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365805,773,076 - 5,781,288 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPATCH4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1207,260,385 - 7,268,112 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl207,262,763 - 7,270,442 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660386,556,774 - 6,564,085 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpatch4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248851,783,892 - 1,793,074 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in GPATCH4
188 total Variants



alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3



Ensembl Acc Id: ENSSSCT00000007099   ⟹   ENSSSCP00000006907
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl493,486,380 - 93,494,829 (+)Ensembl
RefSeq Acc Id: NM_001243353   ⟹   NP_001230282
RefSeq Status: VALIDATED
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1493,486,365 - 93,492,837 (+)NCBI
Sequence:
Protein RefSeqs NP_001230282 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000006907
  ENSSSCP00000006907.2
  ENSSSCP00025002461.1
  ENSSSCP00035010040.1
  ENSSSCP00045039814.1
  ENSSSCP00055002246.1
  ENSSSCP00070046753.1
RefSeq Acc Id: NP_001230282   ⟸   NM_001243353
- UniProtKB: F1RP33 (UniProtKB/TrEMBL),   A0A4X1VYN3 (UniProtKB/TrEMBL),   A0A480YWX2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000006907   ⟸   ENSSSCT00000007099
G-patch



1 to 26 of 26 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000006481 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025004520 UniProtKB/TrEMBL
  ENSSSCG00035020285 UniProtKB/TrEMBL
  ENSSSCG00045033342 UniProtKB/TrEMBL
  ENSSSCG00055001652 UniProtKB/TrEMBL
  ENSSSCG00070027479 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000007099 ENTREZGENE
  ENSSSCT00000007099.5 UniProtKB/TrEMBL
  ENSSSCT00025006063.1 UniProtKB/TrEMBL
  ENSSSCT00035026367.1 UniProtKB/TrEMBL
  ENSSSCT00045056980.1 UniProtKB/TrEMBL
  ENSSSCT00055002996.1 UniProtKB/TrEMBL
  ENSSSCT00070055099.1 UniProtKB/TrEMBL
InterPro G_patch_dom UniProtKB/TrEMBL
  PINX1 UniProtKB/TrEMBL
KEGG Report ssc:100152732 UniProtKB/TrEMBL
NCBI Gene GPATCH4 ENTREZGENE
PANTHER G PATCH DOMAIN CONTAINING PROTEIN UniProtKB/TrEMBL
  G PATCH DOMAIN-CONTAINING PROTEIN 4 UniProtKB/TrEMBL
Pfam G-patch UniProtKB/TrEMBL
PROSITE G_PATCH UniProtKB/TrEMBL
SMART G_patch UniProtKB/TrEMBL
UniProt A0A480YWX2 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1VYN3 ENTREZGENE, UniProtKB/TrEMBL
  F1RP33 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88577 ENTREZGENE
1 to 26 of 26 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-03-28 GPATCH4  G-patch domain containing 4  GPATCH4  G-patch domain containing 4 (gene/pseudogene)  Symbol and/or name change 19259463 PROVISIONAL
2021-11-01 GPATCH4  G-patch domain containing 4 (gene/pseudogene)  GPATCH4  G-patch domain containing 4  Symbol and/or name change 19259463 PROVISIONAL