CISD3 (CDGSH iron sulfur domain 3) - Rat Genome Database

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Gene: CISD3 (CDGSH iron sulfur domain 3) Sus scrofa
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Symbol: CISD3
Name: CDGSH iron sulfur domain 3
RGD ID: 13960710
Description: ENCODES a protein that exhibits 2 iron, 2 sulfur cluster binding (inferred); iron-sulfur cluster binding (inferred); metal ion binding (inferred); INVOLVED IN protein maturation (inferred); ASSOCIATED WITH genetic disease (ortholog); Turnpenny-Fry Syndrome (ortholog); Wolfram syndrome 2 (ortholog); FOUND IN cytoplasm (inferred); mitochondrion (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: CDGSH iron-sulfur domain-containing protein 3, mitochondrial
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,376,002 - 23,379,584 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,375,998 - 23,379,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CISD3Piggenetic disease  ISORGD:16266928554872ClinVar Annotator: match by term: Inborn genetic diseasesClinVarPMID:28492532|PMID:36413997
CISD3PigTurnpenny-Fry Syndrome  ISORGD:16266928554872ClinVar Annotator: match by term: PCGF2-related condition | ClinVar Annotator: match by term: Turnpenny-fry syndromeClinVarPMID:25741868|PMID:28492532
CISD3PigWolfram syndrome 2  ISORGD:16266928554872ClinVar Annotator: match by term: Wolfram syndrome 2ClinVarPMID:25741868


Biological Process

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CISD3Pigprotein maturation involved_inIEAUniProtKB:P0C7P0|ensembl:ENSP00000483781150520179 EnsemblGO_REF:0000107

Cellular Component

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CISD3Pigcytoplasm located_inIEAARBA:ARBA00026971150520179 UniProtGO_REF:0000117
CISD3Pigmitochondrion located_inIEAUniProtKB:P0C7P0|ensembl:ENSP00000483781150520179 EnsemblGO_REF:0000107
CISD3Pigmitochondrion is_active_inIBAPANTHER:PTN001007595|UniProtKB:P0C7P0150520179 GO_CentralGO_REF:0000033

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
CISD3Pig2 iron, 2 sulfur cluster binding enablesIBAPANTHER:PTN005307478|UniProtKB:P0C7P0150520179 GO_CentralGO_REF:0000033
CISD3Pig2 iron, 2 sulfur cluster binding enablesIEAUniProtKB-KW:KW-0001150520179 UniProtGO_REF:0000043
CISD3Pig2 iron, 2 sulfur cluster binding enablesIEAUniProtKB:P0C7P0|ensembl:ENSP00000483781150520179 EnsemblGO_REF:0000107
CISD3Pig2 iron, 2 sulfur cluster binding enablesIEAInterPro:IPR018967150520179 InterProGO_REF:0000002
CISD3Pigiron-sulfur cluster binding enablesIEAUniProtKB-KW:KW-0411150520179 UniProtGO_REF:0000043
CISD3Pigmetal ion binding enablesIEAUniProtKB:P0C7P0|ensembl:ENSP00000483781150520179 EnsemblGO_REF:0000107
CISD3Pigmetal ion binding enablesIEAUniProtKB-KW:KW-0479150520179 UniProtGO_REF:0000043

PMID:22301074  



CISD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1223,376,002 - 23,379,584 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11223,375,998 - 23,379,587 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CISD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381738,730,341 - 38,735,605 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1738,730,341 - 38,735,605 (+)EnsemblGRCh38hg38GRCh38
GRCh371736,886,594 - 36,891,858 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361734,138,986 - 34,145,383 (+)NCBINCBI36Build 36hg18NCBI36
Celera1733,547,468 - 33,552,818 (+)NCBICelera
Cytogenetic Map17q12NCBI
HuRef1732,683,132 - 32,687,987 (+)NCBIHuRef
CHM1_11737,121,826 - 37,127,177 (+)NCBICHM1_1
T2T-CHM13v2.01739,593,426 - 39,598,690 (+)NCBIT2T-CHM13v2.0
Cisd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391197,576,291 - 97,579,451 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1197,576,652 - 97,579,447 (+)EnsemblGRCm39 Ensembl
GRCm381197,685,465 - 97,688,625 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1197,685,826 - 97,688,621 (+)EnsemblGRCm38mm10GRCm38
MGSCv371197,547,266 - 97,549,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361197,501,677 - 97,504,715 (+)NCBIMGSCv36mm8
Celera11107,335,758 - 107,338,441 (+)NCBICelera
Cytogenetic Map11DNCBI
cM Map1161.06NCBI
Cisd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81083,175,708 - 83,178,739 (+)NCBIGRCr8
mRatBN7.21082,679,345 - 82,682,376 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1082,679,196 - 82,682,550 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1087,627,099 - 87,630,127 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01087,125,190 - 87,128,218 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01082,517,771 - 82,520,799 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01085,628,579 - 85,631,656 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1085,628,491 - 85,631,657 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01085,415,946 - 85,419,003 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41086,434,901 - 86,437,932 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1081,435,130 - 81,438,161 (+)NCBICelera
Cytogenetic Map10q31NCBI
Cisd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545113,814,135 - 13,817,334 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495545113,814,679 - 13,817,334 (+)NCBIChiLan1.0ChiLan1.0
CISD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21926,216,912 - 26,220,675 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11728,100,485 - 28,103,892 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01718,538,545 - 18,543,374 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11718,815,044 - 18,820,685 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1718,815,044 - 18,817,980 (-)Ensemblpanpan1.1panPan2
CISD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1923,501,167 - 23,504,302 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl923,501,168 - 23,504,308 (-)EnsemblCanFam3.1canFam3CanFam3.1
Cisd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440560222,936,199 - 22,938,976 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649014,136,640 - 14,138,969 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493649014,136,209 - 14,138,940 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CISD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11667,462,038 - 67,465,843 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1667,458,472 - 67,465,572 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607738,459,661 - 38,463,171 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cisd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247953,952,477 - 3,955,127 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247953,952,500 - 3,955,123 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

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Variants in CISD3
49 total Variants






Ensembl Acc Id: ENSSSCT00000025319   ⟹   ENSSSCP00000027759
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,376,002 - 23,379,385 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000048529   ⟹   ENSSSCP00000049586
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1223,376,002 - 23,379,584 (-)Ensembl
RefSeq Acc Id: XM_021067067   ⟹   XP_020922726
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11223,375,998 - 23,379,417 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337143
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11223,375,998 - 23,379,422 (-)NCBI
Sequence:
RefSeq Acc Id: XR_002337144
Type: NON-CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11223,375,998 - 23,379,587 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020922726   ⟸   XM_021067067
- UniProtKB: A0A8D1IAF5 (UniProtKB/TrEMBL),   I3LUF9 (UniProtKB/TrEMBL),   A0A480XMR2 (UniProtKB/TrEMBL),   A0A287AZL4 (UniProtKB/TrEMBL),   A0A4X1UGF7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000027759   ⟸   ENSSSCT00000025319
Ensembl Acc Id: ENSSSCP00000049586   ⟸   ENSSSCT00000048529


1 to 40 of 50 rows
Database
Acc Id
Source(s)
Ensembl Genes ENSSSCG00000022187 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015043331 UniProtKB/TrEMBL
  ENSSSCG00025046781 UniProtKB/TrEMBL
  ENSSSCG00030037665 UniProtKB/TrEMBL
  ENSSSCG00035020921 UniProtKB/TrEMBL
  ENSSSCG00040038170 UniProtKB/TrEMBL
  ENSSSCG00045027149 UniProtKB/TrEMBL
  ENSSSCG00050057869 UniProtKB/TrEMBL
  ENSSSCG00055004406 UniProtKB/TrEMBL
  ENSSSCG00065041795 UniProtKB/TrEMBL
  ENSSSCG00070017633 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000025319.4 UniProtKB/TrEMBL
  ENSSSCT00000048529 ENTREZGENE
  ENSSSCT00000048529.3 UniProtKB/TrEMBL
  ENSSSCT00015057683.1 UniProtKB/TrEMBL
  ENSSSCT00025063605.1 UniProtKB/TrEMBL
  ENSSSCT00025063849.1 UniProtKB/TrEMBL
  ENSSSCT00030052424.1 UniProtKB/TrEMBL
  ENSSSCT00030052448.1 UniProtKB/TrEMBL
  ENSSSCT00035027233.1 UniProtKB/TrEMBL
  ENSSSCT00035027246.1 UniProtKB/TrEMBL
  ENSSSCT00040051073.1 UniProtKB/TrEMBL
  ENSSSCT00040051172.1 UniProtKB/TrEMBL
  ENSSSCT00045046246.1 UniProtKB/TrEMBL
  ENSSSCT00045046342.1 UniProtKB/TrEMBL
  ENSSSCT00050078931.1 UniProtKB/TrEMBL
  ENSSSCT00055008695.1 UniProtKB/TrEMBL
  ENSSSCT00055008703.1 UniProtKB/TrEMBL
  ENSSSCT00065057176.1 UniProtKB/TrEMBL
  ENSSSCT00065057181.1 UniProtKB/TrEMBL
  ENSSSCT00070034815.1 UniProtKB/TrEMBL
  ENSSSCT00070034818.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.5.90 UniProtKB/TrEMBL
InterPro CISD UniProtKB/TrEMBL
  FeS-contain_CDGSH-typ UniProtKB/TrEMBL
  FeS-contain_mitoNEET_C UniProtKB/TrEMBL
NCBI Gene CISD3 ENTREZGENE
PANTHER CDGSH IRON SULFUR DOMAIN PROTEIN HOMOLOG UniProtKB/TrEMBL
  CDGSH IRON-SULFUR DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL UniProtKB/TrEMBL
Pfam zf-CDGSH UniProtKB/TrEMBL
1 to 40 of 50 rows