TMEM151A (transmembrane protein 151A) - Rat Genome Database

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Gene: TMEM151A (transmembrane protein 151A) Sus scrofa
Analyze
Symbol: TMEM151A
Name: transmembrane protein 151A
RGD ID: 13955511
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,090,543 - 6,095,352 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,090,535 - 6,095,499 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,166,684 - 5,171,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
endoplasmic reticulum  (IBA,IEA)
membrane  (IBA,IEA)

References

Genomics

Comparative Map Data
TMEM151A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,090,543 - 6,095,352 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,090,535 - 6,095,499 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,166,684 - 5,171,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM151A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,291,894 - 66,296,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,291,894 - 66,296,664 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,059,365 - 66,064,135 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,815,917 - 65,820,711 (+)NCBINCBI36Build 36hg18NCBI36
Celera1163,381,653 - 63,383,997 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,384,549 - 62,389,311 (+)NCBIHuRef
CHM1_11165,943,481 - 65,948,242 (+)NCBICHM1_1
T2T-CHM13v2.01166,285,557 - 66,290,327 (+)NCBIT2T-CHM13v2.0
Tmem151a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,120,859 - 5,135,519 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,120,887 - 5,135,559 (-)EnsemblGRCm39 Ensembl
GRCm38195,079,333 - 5,085,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,070,859 - 5,085,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,079,337 - 5,085,477 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,079,337 - 5,085,477 (-)NCBIMGSCv36mm8
Celera194,948,416 - 4,967,674 (-)NCBICelera
Cytogenetic Map19ANCBI
Tmem151a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,816,773 - 211,821,558 (-)NCBIGRCr8
mRatBN7.21202,387,397 - 202,392,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,388,240 - 202,392,182 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,740,453 - 210,745,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,832,840 - 217,837,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,523,874 - 210,528,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,373,288 - 220,378,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,373,290 - 220,467,159 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,304,311 - 227,309,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,703,693 - 207,705,638 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,857,750 - 207,861,910 (-)NCBI
Celera1199,927,362 - 199,929,307 (-)NCBICelera
Cytogenetic Map1q43NCBI
Tmem151a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,019,879 - 19,026,247 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,021,524 - 19,026,241 (-)NCBIChiLan1.0ChiLan1.0
TMEM151A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,525,778 - 67,530,606 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,568,666 - 68,577,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,657,453 - 61,662,262 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,983,084 - 64,987,816 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,983,084 - 64,987,816 (+)Ensemblpanpan1.1panPan2
TMEM151A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,008,288 - 51,013,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,009,415 - 51,013,181 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,616,991 - 49,621,697 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,046,596 - 52,051,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,046,620 - 52,051,645 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,146,717 - 51,151,409 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,720,850 - 50,725,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,511,000 - 51,515,703 (-)NCBIUU_Cfam_GSD_1.0
Tmem151a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,856,816 - 6,861,581 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,297,694 - 3,303,938 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,298,799 - 3,303,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM151A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,970,012 - 7,974,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,971,134 - 7,974,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,251,242 - 105,256,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem151a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,072,493 - 20,078,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,072,609 - 20,077,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TMEM151A
134 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
ectoderm
endocrine system
mesoderm
nervous system
reproductive system
1 23 3 2 23 3

Sequence


Ensembl Acc Id: ENSSSCT00000014157   ⟹   ENSSSCP00000013771
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,090,543 - 6,095,352 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000091197   ⟹   ENSSSCP00000066617
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl26,090,535 - 6,094,697 (-)Ensembl
RefSeq Acc Id: XM_003122499   ⟹   XP_003122547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.126,090,535 - 6,095,499 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003122547   ⟸   XM_003122499
- UniProtKB: F1RU42 (UniProtKB/TrEMBL),   A0A4X1TSM4 (UniProtKB/TrEMBL),   A0A8D1T4V1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000066617   ⟸   ENSSSCT00000091197
Ensembl Acc Id: ENSSSCP00000013771   ⟸   ENSSSCT00000014157


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012952 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025074306 UniProtKB/TrEMBL
  ENSSSCG00030007369 UniProtKB/TrEMBL
  ENSSSCG00035061726 UniProtKB/TrEMBL
  ENSSSCG00040043686 UniProtKB/TrEMBL
  ENSSSCG00045019517 UniProtKB/TrEMBL
  ENSSSCG00050015701 UniProtKB/TrEMBL
  ENSSSCG00055022298 UniProtKB/TrEMBL
  ENSSSCG00060033402 UniProtKB/TrEMBL
  ENSSSCG00065023095 UniProtKB/TrEMBL
  ENSSSCG00070011358 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000014157 ENTREZGENE
  ENSSSCT00000014157.5 UniProtKB/TrEMBL
  ENSSSCT00025102350.1 UniProtKB/TrEMBL
  ENSSSCT00025102385.1 UniProtKB/TrEMBL
  ENSSSCT00030009872.1 UniProtKB/TrEMBL
  ENSSSCT00030009877.1 UniProtKB/TrEMBL
  ENSSSCT00035082921.1 UniProtKB/TrEMBL
  ENSSSCT00035082930.1 UniProtKB/TrEMBL
  ENSSSCT00040058512.1 UniProtKB/TrEMBL
  ENSSSCT00040058536.1 UniProtKB/TrEMBL
  ENSSSCT00045033215.1 UniProtKB/TrEMBL
  ENSSSCT00045033263.1 UniProtKB/TrEMBL
  ENSSSCT00050021253.1 UniProtKB/TrEMBL
  ENSSSCT00050021256.1 UniProtKB/TrEMBL
  ENSSSCT00055043785.1 UniProtKB/TrEMBL
  ENSSSCT00055043809.1 UniProtKB/TrEMBL
  ENSSSCT00060045280.1 UniProtKB/TrEMBL
  ENSSSCT00060045282.1 UniProtKB/TrEMBL
  ENSSSCT00065030720.1 UniProtKB/TrEMBL
  ENSSSCT00065030723.1 UniProtKB/TrEMBL
  ENSSSCT00070022129.1 UniProtKB/TrEMBL
InterPro Tmem151 UniProtKB/TrEMBL
KEGG Report ssc:100520884 UniProtKB/TrEMBL
NCBI Gene TMEM151A ENTREZGENE
PANTHER PTHR31893 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 151A UniProtKB/TrEMBL
Pfam TMEM151 UniProtKB/TrEMBL
UniProt A0A4X1TSM4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T4V1 ENTREZGENE, UniProtKB/TrEMBL
  F1RU42 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:94097 ENTREZGENE