TMEM151A (transmembrane protein 151A) - Rat Genome Database

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Gene: TMEM151A (transmembrane protein 151A) Chlorocebus sabaeus
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Symbol: TMEM151A
Name: transmembrane protein 151A
RGD ID: 18776482
Description: ASSOCIATED WITH Aicardi-Goutieres Syndrome 3 (ortholog); autosomal recessive cutis laxa type IB (ortholog); Bardet-Biedl syndrome (ortholog); FOUND IN endoplasmic reticulum (inferred); membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: ChlSab1.1 - Green Monkey 1.1 Assembly
Position:
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,970,012 - 7,974,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,971,134 - 7,974,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,251,242 - 105,256,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Comparative Map Data
TMEM151A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.117,970,012 - 7,974,954 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl17,971,134 - 7,974,764 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_023666038105,251,242 - 105,256,183 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
TMEM151A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381166,291,894 - 66,296,664 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1166,291,894 - 66,296,664 (+)EnsemblGRCh38hg38GRCh38
GRCh371166,059,365 - 66,064,135 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,815,917 - 65,820,711 (+)NCBINCBI36Build 36hg18NCBI36
Celera1163,381,653 - 63,383,997 (+)NCBICelera
Cytogenetic Map11q13.2NCBI
HuRef1162,384,549 - 62,389,311 (+)NCBIHuRef
CHM1_11165,943,481 - 65,948,242 (+)NCBICHM1_1
T2T-CHM13v2.01166,285,557 - 66,290,327 (+)NCBIT2T-CHM13v2.0
Tmem151a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39195,120,859 - 5,135,519 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl195,120,887 - 5,135,559 (-)EnsemblGRCm39 Ensembl
GRCm38195,079,333 - 5,085,491 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl195,070,859 - 5,085,531 (-)EnsemblGRCm38mm10GRCm38
MGSCv37195,079,337 - 5,085,477 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36195,079,337 - 5,085,477 (-)NCBIMGSCv36mm8
Celera194,948,416 - 4,967,674 (-)NCBICelera
Cytogenetic Map19ANCBI
Tmem151a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81211,816,773 - 211,821,558 (-)NCBIGRCr8
mRatBN7.21202,387,397 - 202,392,182 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1202,388,240 - 202,392,182 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1210,740,453 - 210,745,245 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01217,832,840 - 217,837,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01210,523,874 - 210,528,659 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01220,373,288 - 220,378,080 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1220,373,290 - 220,467,159 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01227,304,311 - 227,309,105 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41207,703,693 - 207,705,638 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11207,857,750 - 207,861,910 (-)NCBI
Celera1199,927,362 - 199,929,307 (-)NCBICelera
Cytogenetic Map1q43NCBI
Tmem151a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542219,019,879 - 19,026,247 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495542219,021,524 - 19,026,241 (-)NCBIChiLan1.0ChiLan1.0
TMEM151A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2967,525,778 - 67,530,606 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11168,568,666 - 68,577,432 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01161,657,453 - 61,662,262 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11164,983,084 - 64,987,816 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1164,983,084 - 64,987,816 (+)Ensemblpanpan1.1panPan2
TMEM151A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11851,008,288 - 51,013,091 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1851,009,415 - 51,013,181 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1849,616,991 - 49,621,697 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01852,046,596 - 52,051,409 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1852,046,620 - 52,051,645 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11851,146,717 - 51,151,409 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01850,720,850 - 50,725,553 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01851,511,000 - 51,515,703 (-)NCBIUU_Cfam_GSD_1.0
Tmem151a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049476,856,816 - 6,861,581 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365993,297,694 - 3,303,938 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365993,298,799 - 3,303,912 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM151A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl26,090,543 - 6,095,352 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.126,090,535 - 6,095,499 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.225,166,684 - 5,171,746 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Tmem151a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476720,072,493 - 20,078,233 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476720,072,609 - 20,077,454 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

endocrine system hemolymphoid system nervous system
High
Medium 33
Low 31 10 27
Below cutoff 4 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_007976597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACDXN010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSCSAT00000006204   ⟹   ENSCSAP00000004413
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.1 Ensembl17,971,134 - 7,974,764 (-)Ensembl
RefSeq Acc Id: XM_007976597   ⟹   XP_007974788
Type: CODING
Position:
Green Monkey AssemblyChrPosition (strand)Source
ChlSab1.117,970,012 - 7,974,954 (-)NCBI
Vero_WHO_p1.0NW_023666038105,251,242 - 105,256,183 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_007974788 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSCSAP00000004413
  ENSCSAP00000004413.1
RefSeq Acc Id: XP_007974788   ⟸   XM_007976597
- UniProtKB: A0A0D9R724 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSCSAP00000004413   ⟸   ENSCSAT00000006204


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSCSAG00000008154 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSCSAT00000006204.1 UniProtKB/TrEMBL
InterPro Tmem151 UniProtKB/TrEMBL
KEGG Report csab:103223748 UniProtKB/TrEMBL
NCBI Gene TMEM151A ENTREZGENE
PANTHER PTHR31893 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 151A UniProtKB/TrEMBL
Pfam TMEM151 UniProtKB/TrEMBL
UniProt A0A0D9R724 ENTREZGENE, UniProtKB/TrEMBL