NTAN1 (N-terminal asparagine amidase) - Rat Genome Database

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Gene: NTAN1 (N-terminal asparagine amidase) Sus scrofa
Analyze
Symbol: NTAN1
Name: N-terminal asparagine amidase
RGD ID: 13941155
Description: ENCODES a protein that exhibits hydrolase activity (inferred); protein-N-terminal asparagine amidohydrolase activity (inferred); INVOLVED IN adult locomotory behavior (ortholog); memory (ortholog); ASSOCIATED WITH autistic disorder (ortholog); epilepsy (ortholog); genetic disease (ortholog); FOUND IN cytoplasm (inferred); nucleus (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: N-terminal asparagine amidohydrolase; PNAA; PNAD; protein N-terminal Asn amidase; protein N-terminal asparagine amidohydrolase; protein NH2-terminal asparagine amidohydrolase; protein NH2-terminal asparagine deamidase; protein NTN-amidase
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
NCBI Annotation Information: Annotation category: partial on reference assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,520,774 - 7,535,503 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,520,771 - 7,535,423 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap3p16-p17NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleus  (IBA,IEA)

Molecular Function

References
Additional References at PubMed
PMID:7814382   PMID:8089117   PMID:14681463   PMID:17145712   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
NTAN1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl37,520,774 - 7,535,503 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.137,520,771 - 7,535,423 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Pig Cytomap3p16-p17NCBI
NTAN1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381615,037,857 - 15,056,074 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1615,037,854 - 15,056,079 (-)EnsemblGRCh38hg38GRCh38
GRCh371615,131,714 - 15,149,931 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361615,039,215 - 15,057,334 (-)NCBINCBI36Build 36hg18NCBI36
Build 341615,039,217 - 15,057,334NCBI
Celera1616,188,840 - 16,208,298 (+)NCBICelera
Cytogenetic Map16p13.11NCBI
HuRef1614,776,857 - 14,795,255 (-)NCBIHuRef
CHM1_11615,133,826 - 15,152,060 (+)NCBICHM1_1
T2T-CHM13v2.01615,038,909 - 15,057,126 (-)NCBIT2T-CHM13v2.0
Ntan1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391613,636,629 - 13,653,314 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1613,636,709 - 13,653,315 (+)EnsemblGRCm39 Ensembl
GRCm381613,818,834 - 13,835,450 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1613,818,845 - 13,835,451 (+)EnsemblGRCm38mm10GRCm38
MGSCv371613,819,370 - 13,835,543 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361613,732,855 - 13,749,028 (+)NCBIMGSCv36mm8
Celera1614,423,558 - 14,439,498 (+)NCBICelera
Cytogenetic Map16A1NCBI
cM Map169.64NCBI
Ntan1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8102,618,239 - 2,633,185 (-)NCBIGRCr8
mRatBN7.2102,111,090 - 2,126,119 (-)NCBImRatBN7.2mRatBN7.2
UTH_Rnor_SHR_Utx106,807,930 - 6,822,876 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01033,742,965 - 33,757,911 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0102,014,376 - 2,029,330 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0103,218,414 - 3,235,229 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl103,218,466 - 3,235,229 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0102,095,991 - 2,112,745 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4101,531,025 - 1,545,977 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1101,531,054 - 1,545,841 (+)NCBI
Celera101,141,452 - 1,156,350 (-)NCBICelera
Cytogenetic Map10q11NCBI
Ntan1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955442169,814 - 186,253 (+)EnsemblChiLan1.0
ChiLan1.0NW_004955442169,814 - 186,253 (+)NCBIChiLan1.0ChiLan1.0
NTAN1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21815,313,355 - 15,330,992 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11619,096,217 - 19,113,852 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01613,704,891 - 13,722,531 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
NTAN1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1628,465,028 - 28,478,201 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl628,465,035 - 28,478,177 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha629,828,270 - 29,840,333 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0628,627,989 - 28,640,143 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1628,431,110 - 28,443,174 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0628,321,233 - 28,333,288 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0628,726,984 - 28,739,024 (-)NCBIUU_Cfam_GSD_1.0
Ntan1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344114,841,403 - 114,849,514 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365012,932,605 - 2,947,374 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365012,939,271 - 2,947,187 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NTAN1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1514,276,047 - 14,294,126 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl514,276,093 - 14,293,964 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606815,752,920 - 15,770,999 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ntan1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248248,617,134 - 8,635,138 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248248,617,116 - 8,633,227 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NTAN1
164 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 9 2 5 3 2 3
Low 1 2 3 2 20 3
Below cutoff

Sequence


RefSeq Acc Id: ENSSSCT00000042357   ⟹   ENSSSCP00000033644
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl37,520,774 - 7,535,503 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000077693   ⟹   ENSSSCP00000067584
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl37,520,774 - 7,535,503 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000084796   ⟹   ENSSSCP00000073457
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl37,520,778 - 7,534,159 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000087061   ⟹   ENSSSCP00000060081
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl37,520,771 - 7,535,904 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000096639   ⟹   ENSSSCP00000077230
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl37,520,935 - 7,534,159 (-)Ensembl
RefSeq Acc Id: NM_214042   ⟹   NP_999207
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.137,520,771 - 7,535,423 (-)NCBI
Sequence:
RefSeq Acc Id: NP_999207   ⟸   NM_214042
- UniProtKB: A0A286ZPV6 (UniProtKB/Swiss-Prot),   Q28955 (UniProtKB/Swiss-Prot),   A0A480J3W3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000073457   ⟸   ENSSSCT00000084796
RefSeq Acc Id: ENSSSCP00000033644   ⟸   ENSSSCT00000042357
RefSeq Acc Id: ENSSSCP00000067584   ⟸   ENSSSCT00000077693
RefSeq Acc Id: ENSSSCP00000060081   ⟸   ENSSSCT00000087061
RefSeq Acc Id: ENSSSCP00000077230   ⟸   ENSSSCT00000096639


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000037398 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00005044894 UniProtKB/TrEMBL
  ENSSSCG00015059419 UniProtKB/TrEMBL
  ENSSSCG00030034784 UniProtKB/TrEMBL
  ENSSSCG00035063955 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00040059367 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ENSSSCG00045019397 UniProtKB/TrEMBL
  ENSSSCG00050009695 UniProtKB/TrEMBL
  ENSSSCG00055005974 UniProtKB/TrEMBL
  ENSSSCG00060061186 UniProtKB/TrEMBL
  ENSSSCG00065057742 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000042357 ENTREZGENE
  ENSSSCT00000042357.2 UniProtKB/TrEMBL
  ENSSSCT00000042357.3 UniProtKB/Swiss-Prot
  ENSSSCT00000077693.2 UniProtKB/TrEMBL
  ENSSSCT00000084796.1 UniProtKB/TrEMBL
  ENSSSCT00000096639.1 UniProtKB/TrEMBL
  ENSSSCT00005072403.1 UniProtKB/TrEMBL
  ENSSSCT00015079478.1 UniProtKB/TrEMBL
  ENSSSCT00015079736.1 UniProtKB/TrEMBL
  ENSSSCT00030048195.1 UniProtKB/TrEMBL
  ENSSSCT00030048225.1 UniProtKB/TrEMBL
  ENSSSCT00035086018.1 UniProtKB/Swiss-Prot
  ENSSSCT00035086026.1 UniProtKB/TrEMBL
  ENSSSCT00035086036.1 UniProtKB/TrEMBL
  ENSSSCT00035086047.1 UniProtKB/TrEMBL
  ENSSSCT00040080708.1 UniProtKB/Swiss-Prot
  ENSSSCT00040080751.1 UniProtKB/TrEMBL
  ENSSSCT00040080785.1 UniProtKB/TrEMBL
  ENSSSCT00040080818.1 UniProtKB/TrEMBL
  ENSSSCT00045033146.1 UniProtKB/TrEMBL
  ENSSSCT00050013090.1 UniProtKB/TrEMBL
  ENSSSCT00050013103.1 UniProtKB/TrEMBL
  ENSSSCT00055011704.1 UniProtKB/TrEMBL
  ENSSSCT00060083527.1 UniProtKB/TrEMBL
  ENSSSCT00060083549.1 UniProtKB/TrEMBL
  ENSSSCT00065079018.1 UniProtKB/TrEMBL
  ENSSSCT00065079023.1 UniProtKB/TrEMBL
InterPro NTAN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report ssc:397107 UniProtKB/Swiss-Prot
NCBI Gene NTAN1 ENTREZGENE
PANTHER PROTEIN N-TERMINAL ASPARAGINE AMIDOHYDROLASE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12498 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam N_Asn_amidohyd UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A286ZPV6 ENTREZGENE
  A0A480J3W3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QTU7_PIG UniProtKB/TrEMBL
  A0A5H1ZRV6_PIG UniProtKB/TrEMBL
  A0A8D0WMJ5_PIG UniProtKB/TrEMBL
  A0A8D1AYL8_PIG UniProtKB/TrEMBL
  A0A8D1WB01_PIG UniProtKB/TrEMBL
  A0A8D2BQM4_PIG UniProtKB/TrEMBL
  A0A8W4FD89_PIG UniProtKB/TrEMBL
  NTAN1_PIG UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A286ZPV6 UniProtKB/Swiss-Prot
  A0A5G2RFA7 UniProtKB/TrEMBL
VGNC ID VGNC:90927 ENTREZGENE