FCAMR (Fc alpha and mu receptor) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: FCAMR (Fc alpha and mu receptor) Sus scrofa
Analyze
Symbol: FCAMR
Name: Fc alpha and mu receptor
RGD ID: 13938604
Description: ENCODES a protein that exhibits IgA binding (ortholog); IgM binding (ortholog); transmembrane signaling receptor activity (ortholog); ASSOCIATED WITH autistic disorder (ortholog); common variable immunodeficiency 7 (ortholog); gastrointestinal stromal tumor (ortholog); FOUND IN membrane (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Fc fragment of IgA and IgM receptor; high affinity immunoglobulin alpha and immunoglobulin mu Fc receptor
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1967,585,117 - 67,601,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,932,152 - 73,947,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
FCAMR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1967,585,117 - 67,601,655 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2973,932,152 - 73,947,263 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FCAMR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381206,957,967 - 206,970,638 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1206,957,965 - 206,970,625 (-)EnsemblGRCh38hg38GRCh38
GRCh371207,131,312 - 207,143,805 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361205,198,133 - 205,210,117 (-)NCBINCBI36Build 36hg18NCBI36
Celera1180,382,816 - 180,395,474 (-)NCBICelera
Cytogenetic Map1q32.1NCBI
HuRef1177,828,685 - 177,841,343 (-)NCBIHuRef
CHM1_11208,403,934 - 208,416,592 (-)NCBICHM1_1
T2T-CHM13v2.01206,223,168 - 206,235,839 (-)NCBIT2T-CHM13v2.0
Fcamr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391130,712,444 - 130,753,641 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1130,728,639 - 130,742,477 (+)EnsemblGRCm39 Ensembl
GRCm381130,784,706 - 130,825,903 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1130,800,902 - 130,814,740 (+)EnsemblGRCm38mm10GRCm38
MGSCv371132,697,479 - 132,711,317 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361132,628,448 - 132,642,286 (+)NCBIMGSCv36mm8
Celera1133,424,202 - 133,438,043 (+)NCBICelera
Cytogenetic Map1E4NCBI
cM Map156.89NCBI
Fcamr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81344,825,931 - 44,839,938 (+)NCBIGRCr8
mRatBN7.21342,273,891 - 42,288,002 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1342,273,628 - 42,287,113 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01347,538,052 - 47,552,370 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1347,539,231 - 47,552,848 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01352,626,937 - 52,641,590 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41343,752,437 - 43,764,514 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1342,622,036 - 42,636,354 (+)NCBICelera
Cytogenetic Map13q13NCBI
Fcamr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540642,484,614 - 42,496,672 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540642,484,811 - 42,518,714 (-)NCBIChiLan1.0ChiLan1.0
FCAMR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2142,403,436 - 42,415,684 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1142,369,137 - 42,381,632 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01182,561,953 - 182,574,818 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11186,840,337 - 186,853,189 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1186,841,103 - 186,852,689 (-)Ensemblpanpan1.1panPan2
FCAMR
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.176,096,889 - 6,110,403 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl76,097,349 - 6,110,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha75,660,408 - 5,670,480 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.075,785,803 - 5,795,873 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl75,785,776 - 5,798,854 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.175,720,075 - 5,730,172 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.075,821,114 - 5,831,200 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.075,861,165 - 5,871,293 (-)NCBIUU_Cfam_GSD_1.0
Fcamr
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934468,424,760 - 68,437,764 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365575,663,621 - 5,673,687 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LOC103230183
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12522,389,223 - 22,398,341 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2522,389,314 - 22,398,499 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605523,053,887 - 23,062,730 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fcamr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248074,508,910 - 4,534,263 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FCAMR
635 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
hemolymphoid system
mesenchyme
mesoderm
reproductive system
respiratory system
8 2 5 7 5 1 1

Sequence


RefSeq Acc Id: XM_021063320   ⟹   XP_020918979
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1967,585,117 - 67,601,655 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020918979 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000029683
  ENSSSCP00000029683.2
  ENSSSCP00015042326.1
RefSeq Acc Id: XP_020918979   ⟸   XM_021063320
- UniProtKB: K7GP71 (UniProtKB/TrEMBL),   A0A8D0Q2R2 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
Immunoglobulin subtype


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000030821 ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015075840 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033380 ENTREZGENE
  ENSSSCT00000033380.4 UniProtKB/TrEMBL
  ENSSSCT00015102119.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/TrEMBL
InterPro CD300_family_receptors UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
NCBI Gene FCAMR ENTREZGENE
PANTHER HIGH AFFINITY IMMUNOGLOBULIN ALPHA AND IMMUNOGLOBULIN MU FC RECEPTOR UniProtKB/TrEMBL
  POLYMERIC-IMMUNOGLOBULIN RECEPTOR UniProtKB/TrEMBL
Pfam V-set UniProtKB/TrEMBL
SMART SM00409 UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/TrEMBL
UniProt A0A8D0Q2R2 ENTREZGENE, UniProtKB/TrEMBL
  K7GP71 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:88058 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-11-08 FCAMR  Fc alpha and mu receptor  FCAMR  Fc fragment of IgA and IgM receptor  Symbol and/or name change 19259463 PROVISIONAL