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Gene: GALNT8 (polypeptide N-acetylgalactosaminyltransferase 8) Sus scrofa

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Symbol:

GALNT8

Name:

polypeptide N-acetylgalactosaminyltransferase 8

RGD ID:

13930871

Description:

ENCODES a protein that exhibits carbohydrate binding (inferred); glycosyltransferase activity (inferred); metal ion binding (inferred); INVOLVED IN protein glycosylation (inferred); ASSOCIATED WITH episodic ataxia type 1 (ortholog); Hyperphosphatemic Familial Tumoral Calcinosis 1 (ortholog); lymphoproliferative syndrome 2 (ortholog); FOUND IN Golgi apparatus (inferred); Golgi membrane (inferred); membrane (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

probable polypeptide N-acetylgalactosaminyltransferase 8; UDP-N-acetyl-alpha-D-galactosamine:polypeptide N-acetylgalactosaminyltransferase 8 (GalNAc-T8)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	65,696,868 - 65,735,536 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	65,697,120 - 65,735,521 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	67,903,081 - 67,941,329 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GALNT8	Pig	episodic ataxia type 1		ISO	GALNT8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Episodic ataxia type 1	ClinVar	PMID:28492532
GALNT8	Pig	Hyperphosphatemic Familial Tumoral Calcinosis 1		ISO	GALNT8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Tumoral calcinosis more ...	ClinVar	PMID:25378588 and PMID:29389098
GALNT8	Pig	lymphoproliferative syndrome 2		ISO	GALNT8 (Homo sapiens)	8554872	ClinVar Annotator: match by term: Lymphoproliferative syndrome 2	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GALNT8	Pig	protein glycosylation	involved_in	IEA	UniPathway:UPA00378	150520179		UniProt	GO_REF:0000041
GALNT8	Pig	protein O-linked glycosylation	involved_in	IBA	FB:FBgn0027558 more ...	150520179		GO_Central	GO_REF:0000033

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GALNT8	Pig	Golgi apparatus	is_active_in	IBA	FB:FBgn0027558 more ...	150520179		GO_Central	GO_REF:0000033
GALNT8	Pig	Golgi apparatus	located_in	IEA	UniProtKB-KW:KW-0333	150520179		UniProt	GO_REF:0000043
GALNT8	Pig	Golgi membrane	located_in	IEA	UniProtKB-SubCell:SL-0134	150520179		UniProt	GO_REF:0000044
GALNT8	Pig	membrane	located_in	IEA	UniProtKB-KW:KW-0472	150520179		UniProt	GO_REF:0000043

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GALNT8	Pig	carbohydrate binding	enables	IEA	UniProtKB-KW:KW-0430	150520179		UniProt	GO_REF:0000043
GALNT8	Pig	glycosyltransferase activity	enables	IEA	UniProtKB-KW:KW-0328	150520179		UniProt	GO_REF:0000043
GALNT8	Pig	metal ion binding	enables	IEA	UniProtKB-KW:KW-0479	150520179		UniProt	GO_REF:0000043
GALNT8	Pig	polypeptide N-acetylgalactosaminyltransferase activity	enables	IBA	FB:FBgn0001970 more ...	150520179		GO_Central	GO_REF:0000033
GALNT8	Pig	polypeptide N-acetylgalactosaminyltransferase activity	enables	IEA	EC:2.4.1.41	150520179		UniProt	GO_REF:0000003

PMID:30032202

GALNT8
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	65,696,868 - 65,735,536 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	65,697,120 - 65,735,521 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	67,903,081 - 67,941,329 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GALNT8
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	4,720,400 - 4,772,726 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	4,720,400 - 4,851,927 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	4,829,566 - 4,881,892 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	4,700,013 - 4,752,153 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	12	4,700,012 - 4,752,153	NCBI
Celera	12	6,451,758 - 6,503,719 (+)	NCBI		Celera
Cytogenetic Map	12	p13.32	NCBI
HuRef	12	4,686,593 - 4,738,667 (+)	NCBI		HuRef
CHM1_1	12	4,829,349 - 4,881,469 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	4,727,222 - 4,779,711 (+)	NCBI		T2T-CHM13v2.0

Gm29788
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	126,769,412 - 126,787,607 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	126,769,412 - 126,787,607 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	126,792,449 - 126,810,644 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	126,792,449 - 126,810,644 (-)	Ensembl	GRCm38		mm10	GRCm38
Celera	6	128,465,015 - 128,488,274 (-)	NCBI		Celera
Cytogenetic Map	6	F3	NCBI

Galnt8
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	161,307,603 - 161,336,485 (-)	NCBI		GRCr8
mRatBN7.2	4	159,626,438 - 159,650,327 (-)	NCBI	mRatBN7.2	mRatBN7.2
Rnor_6.0	4	159,340,750 - 159,362,350 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Celera	4	148,344,913 - 148,366,518 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Galnt8
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955413	2,510,123 - 2,566,842 (+)	NCBI	ChiLan1.0	ChiLan1.0

GALNT8
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	10,261,833 - 10,399,454 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	10,258,570 - 10,328,383 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	4,837,719 - 4,894,120 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	4,758,570 - 4,813,253 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	4,758,570 - 4,810,085 (+)	Ensembl	panpan1.1		panPan2

GALNT8
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	40,077,724 - 40,138,592 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	6,543,861 - 6,678,425 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	40,359,000 - 40,493,551 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	40,437,538 - 40,493,491 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	40,248,030 - 40,382,466 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	40,273,137 - 40,407,572 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	5,954,467 - 6,089,147 (+)	NCBI		UU_Cfam_GSD_1.0

Galnt8
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	104,236,843 - 104,300,964 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936606	4,883,434 - 4,947,621 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GALNT8
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	4,753,079 - 4,819,580 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	11	4,753,234 - 4,816,693 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666063	3,430,165 - 3,493,584 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Galnt8
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624860	1,757,201 - 1,806,854 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in GALNT8
2117 total Variants

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	mesenchyme	mesoderm	reproductive system
6	5	1	1


RefSeq Transcripts	XM_013988444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021092442	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021092443	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_021092444	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000037	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FP102533	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSSSCT00000000781 ⟹ ENSSSCP00000000765

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	65,696,868 - 65,735,536 (-)	Ensembl

Ensembl Acc Id:

ENSSSCT00000101498 ⟹ ENSSSCP00000077362

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	5	65,696,868 - 65,735,434 (-)	Ensembl

RefSeq Acc Id:

XM_013988444 ⟹ XP_013843898

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	65,697,120 - 65,735,521 (-)	NCBI

Sequence:

show sequence

TCACCTGAGGCTGCTTGGTAGAACCAGGCAGTCTGTGACAGCTCTCCTGATCAAAGAACATCTGGCTGGGCAAGCAGACTGTCTTCCATGCAGCTGGCAGAGTCCAGACTCGGCTCATTGTGATCCTC
AGCCTGCCTGGGCAGTGGCACACGCAGACCCCAGGGAGTGACCGAGGCAGAGTGCGATGCTCAGGAGAAGTGTCCCCAGGGTCCTCGGCCTTGGGCTGATGCTGGTCTTTGCTCTCAATCTCCTCCTG
ATACTTTATGCCAAGGGAATTTTACAGAAGCTGGCTCTGGGTGACATCCAGGAAAGGCTTCACTTGCCTCCATCTGAATGGAACAGGACCGCAATGGAGCGACTCTCTCGCCTGGAGATGGACTTGCA
GCATCTGAAAGAACATATGAAACTGGCTATGAAGCAACCAAAAAATGTGGACACCCCACCAGAATGGGTGAGAGATGAAAGTCGGCCTGTTCAAAAGGCAGTGGAAGCCAAGGAGAGGGCGAGGAAGG
ACCAGAAACCAAAAGAGCTTCTGTTTCCAAACTCGGTGCTTTTCCAGAAGTGGGGTGAGGACCTTTCTGAGGAGGAGCAGAAAAAGGCCGAGGCCCTCTTCCAGAAGTTTGGCTACAACGTCTACCTC
AGTGACCAGCTGCCTCTCGCCCGCACCATCCCAGACACGAGGGATCCCAGGTGTCTCTGGAAGAGATATTCTTCGCAGCTCCCGTCCCTCAGTGTCATCCTTATATTCGTGAATGAAGCTCTGTCGGT
TATACAACGGGCCATCGCCAGCATCATCAGCCGGACCCCCCCTCAGCTGTTGAAGGAGATCATCTTAGTGGATGATTTTAGCTCAAATGGAGAGTTAAAGGCACACTTGGATGAGGAGATTAAGCTTT
ACAACCAGAAGTCTCCAGGACTCCTGAAGATAATACGGCATGCCGAGAGAAAAGGTCTTGCTGCAGCTCGAAACACTGGCAGGGAAGCGGCCACAGCCGATGTCGTTGCCATCTTGGATGCTCATGTG
GAAGTGAATGTGGGATGGGCAGAGCCCATCTTGGCTCGAATTCAGCAAGATCGCACTGTGATTGTGTCGCCTGTGTTTGACAAAATTCATTTTGACACCTTGGAACTGGAAAAGTATGCCCTGGCAGT
TGACGGGTTTAACTGGGAATTGTGGTGCCGCTATGATTCATTGCCAAAGGCCTGGGTTGATCTGCACGATGTCACTGCTCCCGTGAAGAGCCCTTCCATCATGGGCATCCTGGCGGCCAACAGGCTCT
TCTTGGAAGAGATTGGATCCCTGGATGGAGGGATGGCGACCTACGGAGGCGAGAACGTGGAACTGAGCCTGAGGGTGTGGCAGTGCGGAGGCAGAATAGAGGTCTTGCCCTGCTCCCGGGTGGCCCAC
CTGGAGAGACACCACAAGCCCTATGCCTTGGACCTGAGTCTTCCCCTGATGCGTAACGCCCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAAGACATGGTCTACATGGCCTGGAACATACCTCT
CCAGAACTCTGGAATCGATATTGGAGACATTTCTTTCCGAAAGGCACTCCGGGAGAAACTGAAATGCAGAAGCTTTGATTGGTATCTGAAAAATGTCTATCCGGTCCTGAAGCCAATCCACAGCATCG
TGGGCTATGGGAGAATGAAAAACCCATTGGATGAAAGTGTCTGCCTGGATCAGGGAGCTAGTCCACACAAGAGCCCCATCATGTATCGCTGTCATCAGTACAGTTCCCAGAATGTCTACTACCACCTA
ACTGGGGAGTTCTACGTGGGACCACTGATTGCTAAGACAGATGCTGAAGATAACTGCCTGACAGACCCTGGCAAAGGGGAGAAGCCCACTTTAGAGCCATGTTCCAAGGCTGTCGAAAATGGACTGTA
CATACATTGGGATTTTAAACCAGGAAGAGCCGTCATAAACAGAGCCACCAAGCGATGTCTGGAGATAAAGAAGGCCTCTCTAGATGGCTACCTGCTTGTCCTCCAGACCTGCACTGCCCAGGTGTGGA
CAATACAGTATACTGTCCGAAACTGGGGGTCAAGCTAATGTCCAGCGAGCCTCAGGGAGCCTGGCTTCTTGACACCGGAATGGCTTTTACATGCAACGCTGCTCAGCTGGGGGAGGGGGAGAGAGAGA
GAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGCAACTTCAGCCAGGACTCTCCCGAAACATGCAACAAATAGACAAGTAATCTTAAAAACAAATCCCTCCAATCACCCCC
CCCTCCCCAGCGGTTTTCTTTGGGTTACTCCCTCTCTCCCATATCAGGGCTTCGGAGGCCGAGGGGAGAAGAGGACATCTGACTAGCCAGCCCCGCTCTGCCCAGGCTGTGAGGAAGGTGGGAAAATC
CAGGTTCCTCTGGGTCTTTCTCAAAGGAGCTTAGAGCATCTAACAGATTTGATTACCTGTTTCCTTCTAAATCCCTGAAAACTATGGGGAAAACGAGGCTTGAAACAGAGAGGCATTGCTTACTGGGG
CACGAAGAAGGGATTGTAGGCAAATGCTGAATCAGGGGTCCTCTCTGCTGCCCACTGGATAAATCCTTTCCTGTAGGTGGTGAGTTAGGGGGATGTAATGTCAAGGGTTGCCAGTTTTGGCCAGGTCT
TGGAGATTGGTGGGAGTGGGCGTTAAGTTGGGAGAAGAAGGGAGTTCCCATTGTGGCGCAGTGGAAATAAATCTGACTAGGACCCATGAGGTTGCAGGTTCGATCCCTGGCCCCGCTCAGTGGCTTAA
GGATCTGGCATAGCTGAGA

hide sequence

RefSeq Acc Id:

XM_021092442 ⟹ XP_020948101

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	65,697,120 - 65,734,709 (-)	NCBI

Sequence:

show sequence

CATATATAATTAGTTGCTCCCTAAGGGGGGCAGGGAGAGAAACAGCCCTCAGCTCAGTGCTCCT
GGCTGCTCTGTTGGTGGATAAACCTGATGGAGCCCTCATTGCTCGGCCTCCTTCTTCCGCTCCGTTTCTAACAGTTGGCTCCGCAGGCATGGTCACAAGTACACCCCTGAGGCTGGGAGGTGGAAGCT
CCAGAAGAACATATGAAACTGGCTATGAAGCAACCAAAAAATGTGGACACCCCACCAGAATGGGTGAGAGATGAAAGTCGGCCTGTTCAAAAGGCAGTGGAAGCCAAGGAGAGGGCGAGGAAGGACCA
GAAACCAAAAGAGCTTCTGTTTCCAAACTCGGTGCTTTTCCAGAAGTGGGGTGAGGACCTTTCTGAGGAGGAGCAGAAAAAGGCCGAGGCCCTCTTCCAGAAGTTTGGCTACAACGTCTACCTCAGTG
ACCAGCTGCCTCTCGCCCGCACCATCCCAGACACGAGGGATCCCAGGTGTCTCTGGAAGAGATATTCTTCGCAGCTCCCGTCCCTCAGTGTCATCCTTATATTCGTGAATGAAGCTCTGTCGGTTATA
CAACGGGCCATCGCCAGCATCATCAGCCGGACCCCCCCTCAGCTGTTGAAGGAGATCATCTTAGTGGATGATTTTAGCTCAAATGGAGAGTTAAAGGCACACTTGGATGAGGAGATTAAGCTTTACAA
CCAGAAGTCTCCAGGACTCCTGAAGATAATACGGCATGCCGAGAGAAAAGGTCTTGCTGCAGCTCGAAACACTGGCAGGGAAGCGGCCACAGCCGATGTCGTTGCCATCTTGGATGCTCATGTGGAAG
TGAATGTGGGATGGGCAGAGCCCATCTTGGCTCGAATTCAGCAAGATCGCACTGTGATTGTGTCGCCTGTGTTTGACAAAATTCATTTTGACACCTTGGAACTGGAAAAGTATGCCCTGGCAGTTGAC
GGGTTTAACTGGGAATTGTGGTGCCGCTATGATTCATTGCCAAAGGCCTGGGTTGATCTGCACGATGTCACTGCTCCCGTGAAGAGCCCTTCCATCATGGGCATCCTGGCGGCCAACAGGCTCTTCTT
GGAAGAGATTGGATCCCTGGATGGAGGGATGGCGACCTACGGAGGCGAGAACGTGGAACTGAGCCTGAGGGTGTGGCAGTGCGGAGGCAGAATAGAGGTCTTGCCCTGCTCCCGGGTGGCCCACCTGG
AGAGACACCACAAGCCCTATGCCTTGGACCTGAGTCTTCCCCTGATGCGTAACGCCCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAAGACATGGTCTACATGGCCTGGAACATACCTCTCCAG
AACTCTGGAATCGATATTGGAGACATTTCTTTCCGAAAGGCACTCCGGGAGAAACTGAAATGCAGAAGCTTTGATTGGTATCTGAAAAATGTCTATCCGGTCCTGAAGCCAATCCACAGCATCGTGGG
CTATGGGAGAATGAAAAACCCATTGGATGAAAGTGTCTGCCTGGATCAGGGAGCTAGTCCACACAAGAGCCCCATCATGTATCGCTGTCATCAGTACAGTTCCCAGAATGTCTACTACCACCTAACTG
GGGAGTTCTACGTGGGACCACTGATTGCTAAGACAGATGCTGAAGATAACTGCCTGACAGACCCTGGCAAAGGGGAGAAGCCCACTTTAGAGCCATGTTCCAAGGCTGTCGAAAATGGACTGTACATA
CATTGGGATTTTAAACCAGGAAGAGCCGTCATAAACAGAGCCACCAAGCGATGTCTGGAGATAAAGAAGGCCTCTCTAGATGGCTACCTGCTTGTCCTCCAGACCTGCACTGCCCAGGTGTGGACAAT
ACAGTATACTGTCCGAAACTGGGGGTCAAGCTAATGTCCAGCGAGCCTCAGGGAGCCTGGCTTCTTGACACCGGAATGGCTTTTACATGCAACGCTGCTCAGCTGGGGGAGGGGGAGAGAGAGAGAGA
GAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGCAACTTCAGCCAGGACTCTCCCGAAACATGCAACAAATAGACAAGTAATCTTAAAAACAAATCCCTCCAATCACCCCCCCCT
CCCCAGCGGTTTTCTTTGGGTTACTCCCTCTCTCCCATATCAGGGCTTCGGAGGCCGAGGGGAGAAGAGGACATCTGACTAGCCAGCCCCGCTCTGCCCAGGCTGTGAGGAAGGTGGGAAAATCCAGG
TTCCTCTGGGTCTTTCTCAAAGGAGCTTAGAGCATCTAACAGATTTGATTACCTGTTTCCTTCTAAATCCCTGAAAACTATGGGGAAAACGAGGCTTGAAACAGAGAGGCATTGCTTACTGGGGCACG
AAGAAGGGATTGTAGGCAAATGCTGAATCAGGGGTCCTCTCTGCTGCCCACTGGATAAATCCTTTCCTGTAGGTGGTGAGTTAGGGGGATGTAATGTCAAGGGTTGCCAGTTTTGGCCAGGTCTTGGA
GATTGGTGGGAGTGGGCGTTAAGTTGGGAGAAGAAGGGAGTTCCCATTGTGGCGCAGTGGAAATAAATCTGACTAGGACCCATGAGGTTGCAGGTTCGATCCCTGGCCCCGCTCAGTGGCTTAAGGAT
CTGGCATAGCTGAGA

hide sequence

RefSeq Acc Id:

XM_021092443 ⟹ XP_020948102

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	65,697,120 - 65,734,461 (-)	NCBI

Sequence:

show sequence

CTTTACGTGGCGGGGGAGGTTCAAGGGTGGTGACAATCCCTGGGGCCAAGGCCTGACTTGCATT
TGCTGGGAGCTCCCCTTGGGAGCGAAGGGGGCTTGTTGGAGGATGCGAGTGGGAGTCCAGAAGAACATATGAAACTGGCTATGAAGCAACCAAAAAATGTGGACACCCCACCAGAATGGGTGAGAGAT
GAAAGTCGGCCTGTTCAAAAGGCAGTGGAAGCCAAGGAGAGGGCGAGGAAGGACCAGAAACCAAAAGAGCTTCTGTTTCCAAACTCGGTGCTTTTCCAGAAGTGGGGTGAGGACCTTTCTGAGGAGGA
GCAGAAAAAGGCCGAGGCCCTCTTCCAGAAGTTTGGCTACAACGTCTACCTCAGTGACCAGCTGCCTCTCGCCCGCACCATCCCAGACACGAGGGATCCCAGGTGTCTCTGGAAGAGATATTCTTCGC
AGCTCCCGTCCCTCAGTGTCATCCTTATATTCGTGAATGAAGCTCTGTCGGTTATACAACGGGCCATCGCCAGCATCATCAGCCGGACCCCCCCTCAGCTGTTGAAGGAGATCATCTTAGTGGATGAT
TTTAGCTCAAATGGAGAGTTAAAGGCACACTTGGATGAGGAGATTAAGCTTTACAACCAGAAGTCTCCAGGACTCCTGAAGATAATACGGCATGCCGAGAGAAAAGGTCTTGCTGCAGCTCGAAACAC
TGGCAGGGAAGCGGCCACAGCCGATGTCGTTGCCATCTTGGATGCTCATGTGGAAGTGAATGTGGGATGGGCAGAGCCCATCTTGGCTCGAATTCAGCAAGATCGCACTGTGATTGTGTCGCCTGTGT
TTGACAAAATTCATTTTGACACCTTGGAACTGGAAAAGTATGCCCTGGCAGTTGACGGGTTTAACTGGGAATTGTGGTGCCGCTATGATTCATTGCCAAAGGCCTGGGTTGATCTGCACGATGTCACT
GCTCCCGTGAAGAGCCCTTCCATCATGGGCATCCTGGCGGCCAACAGGCTCTTCTTGGAAGAGATTGGATCCCTGGATGGAGGGATGGCGACCTACGGAGGCGAGAACGTGGAACTGAGCCTGAGGGT
GTGGCAGTGCGGAGGCAGAATAGAGGTCTTGCCCTGCTCCCGGGTGGCCCACCTGGAGAGACACCACAAGCCCTATGCCTTGGACCTGAGTCTTCCCCTGATGCGTAACGCCCTGCGAGTGGCCGAAA
TCTGGATGGATGAGCACAAAGACATGGTCTACATGGCCTGGAACATACCTCTCCAGAACTCTGGAATCGATATTGGAGACATTTCTTTCCGAAAGGCACTCCGGGAGAAACTGAAATGCAGAAGCTTT
GATTGGTATCTGAAAAATGTCTATCCGGTCCTGAAGCCAATCCACAGCATCGTGGGCTATGGGAGAATGAAAAACCCATTGGATGAAAGTGTCTGCCTGGATCAGGGAGCTAGTCCACACAAGAGCCC
CATCATGTATCGCTGTCATCAGTACAGTTCCCAGAATGTCTACTACCACCTAACTGGGGAGTTCTACGTGGGACCACTGATTGCTAAGACAGATGCTGAAGATAACTGCCTGACAGACCCTGGCAAAG
GGGAGAAGCCCACTTTAGAGCCATGTTCCAAGGCTGTCGAAAATGGACTGTACATACATTGGGATTTTAAACCAGGAAGAGCCGTCATAAACAGAGCCACCAAGCGATGTCTGGAGATAAAGAAGGCC
TCTCTAGATGGCTACCTGCTTGTCCTCCAGACCTGCACTGCCCAGGTGTGGACAATACAGTATACTGTCCGAAACTGGGGGTCAAGCTAATGTCCAGCGAGCCTCAGGGAGCCTGGCTTCTTGACACC
GGAATGGCTTTTACATGCAACGCTGCTCAGCTGGGGGAGGGGGAGAGAGAGAGAGAGAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTACTGCAACTTCAGCCAGGACTCTCCCGAAA
CATGCAACAAATAGACAAGTAATCTTAAAAACAAATCCCTCCAATCACCCCCCCCTCCCCAGCGGTTTTCTTTGGGTTACTCCCTCTCTCCCATATCAGGGCTTCGGAGGCCGAGGGGAGAAGAGGAC
ATCTGACTAGCCAGCCCCGCTCTGCCCAGGCTGTGAGGAAGGTGGGAAAATCCAGGTTCCTCTGGGTCTTTCTCAAAGGAGCTTAGAGCATCTAACAGATTTGATTACCTGTTTCCTTCTAAATCCCT
GAAAACTATGGGGAAAACGAGGCTTGAAACAGAGAGGCATTGCTTACTGGGGCACGAAGAAGGGATTGTAGGCAAATGCTGAATCAGGGGTCCTCTCTGCTGCCCACTGGATAAATCCTTTCCTGTAG
GTGGTGAGTTAGGGGGATGTAATGTCAAGGGTTGCCAGTTTTGGCCAGGTCTTGGAGATTGGTGGGAGTGGGCGTTAAGTTGGGAGAAGAAGGGAGTTCCCATTGTGGCGCAGTGGAAATAAATCTGA
CTAGGACCCATGAGGTTGCAGGTTCGATCCCTGGCCCCGCTCAGTGGCTTAAGGATCTGGCATAGCTGAGA

hide sequence

RefSeq Acc Id:

XM_021092444 ⟹ XP_020948103

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	5	65,704,404 - 65,735,521 (-)	NCBI

Sequence:

show sequence

TCACCTGAGGCTGCTTGGTAGAACCAGGCAGTCTGTGACAGCTCTCCTGATCAAAGAACATCTGGCTGGGCAAGCAGACTGTCTTCCATGCAGCTGGCAGAGTCCAGACTCGGCTCATTGTGATCCTC
AGCCTGCCTGGGCAGTGGCACACGCAGACCCCAGGGAGTGACCGAGGCAGAGTGCGATGCTCAGGAGAAGTGTCCCCAGGGTCCTCGGCCTTGGGCTGATGCTGGTCTTTGCTCTCAATCTCCTCCTG
ATACTTTATGCCAAGGGAATTTTACAGAAGCTGGCTCTGGGTGACATCCAGGAAAGGCTTCACTTGCCTCCATCTGAATGGAACAGGACCGCAATGGAGCGACTCTCTCGCCTGGAGATGGACTTGCA
GCATCTGAAAGAACATATGAAACTGGCTATGAAGCAACCAAAAAATGTGGACACCCCACCAGAATGGGTGAGAGATGAAAGTCGGCCTGTTCAAAAGGCAGTGGAAGCCAAGGAGAGGGCGAGGAAGG
ACCAGAAACCAAAAGAGCTTCTGTTTCCAAACTCGGTGCTTTTCCAGAAGTGGGGTGAGGACCTTTCTGAGGAGGAGCAGAAAAAGGCCGAGGCCCTCTTCCAGAAGTTTGGCTACAACGTCTACCTC
AGTGACCAGCTGCCTCTCGCCCGCACCATCCCAGACACGAGGGATCCCAGGTGTCTCTGGAAGAGATATTCTTCGCAGCTCCCGTCCCTCAGTGTCATCCTTATATTCGTGAATGAAGCTCTGTCGGT
TATACAACGGGCCATCGCCAGCATCATCAGCCGGACCCCCCCTCAGCTGTTGAAGGAGATCATCTTAGTGGATGATTTTAGCTCAAATGGAGAGTTAAAGGCACACTTGGATGAGGAGATTAAGCTTT
ACAACCAGAAGTCTCCAGGACTCCTGAAGATAATACGGCATGCCGAGAGAAAAGGTCTTGCTGCAGCTCGAAACACTGGCAGGGAAGCGGCCACAGCCGATGTCGTTGCCATCTTGGATGCTCATGTG
GAAGTGAATGTGGGATGGGCAGAGCCCATCTTGGCTCGAATTCAGCAAGATCGCACTGTGATTGTGTCGCCTGTGTTTGACAAAATTCATTTTGACACCTTGGAACTGGAAAAGTATGCCCTGGCAGT
TGACGGGTTTAACTGGGAATTGTGGTGCCGCTATGATTCATTGCCAAAGGCCTGGGTTGATCTGCACGATGTCACTGCTCCCGTGAAGAGCCCTTCCATCATGGGCATCCTGGCGGCCAACAGGCTCT
TCTTGGAAGAGATTGGATCCCTGGATGGAGGGATGGCGACCTACGGAGGCGAGAACGTGGAACTGAGCCTGAGGGTGTGGCAGTGCGGAGGCAGAATAGAGGTCTTGCCCTGCTCCCGGGTGGCCCAC
CTGGAGAGACACCACAAGCCCTATGCCTTGGACCTGAGTCTTCCCCTGATGCGTAACGCCCTGCGAGTGGCCGAAATCTGGATGGATGAGCACAAAGACATGGTCTACATGGCCTGGAACATACCTCT
CCAGAACTCTGGAATCGATATTGGAGACATTTCTTTCCGAAAGGCACTCCGGGAGAAACTGAAATGCAGAAGCTTTGATTGGTATCTGAAAAATGTCTATCCGGTCCTGAAGCCAATCCACAGCATCG
TGGGCTATGGGAGAATGAAAAACCCATTGGATGAAAGTGTCTGCCTGGATCAGGGAGCTAGTCCACACAAGAGCCCCATCATGTATCGCTGTCATCAGTACAGTTCCCAGGGAAGGAAACAGAGGCTT
AGAGAAGAGAGAGGCTGAATGGAAGTCCCTCCACGGGATAGGAGAGATCTGGCACCACGTGGAAGGTGTACCCAGGGACGTTTTCCATCTATCCTGTTATTTTTCACTTTGCCCTTATAAGAATGTAT
TGAGGTATGCAGGGGAGATAGCATTTTCATTTCAGAAATGAGAAAACAGACAGGAAAACATCCCATTTGCCCAAGCTCACTGAGCAAGGCAGTGAAAGACTGAGAATTTGCTAAGTTTCTTGACAATA
AGCCCAGAGCTGGGGTTTCTTCTTTTTTAGGGCCACACCGCCACATCTGCTCCATGTGGAAGTTCCCAGGCTGGTTGTTGTCAAATCGGAGCTATCGCTGCCAGCCT

hide sequence


Protein RefSeqs	XP_013843898	(Get FASTA)	NCBI Sequence Viewer
	XP_020948101	(Get FASTA)	NCBI Sequence Viewer
	XP_020948102	(Get FASTA)	NCBI Sequence Viewer
	XP_020948103	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000000765
	ENSSSCP00000000765.3
	ENSSSCP00000077362.1
	ENSSSCP00025004089.1
	ENSSSCP00025004095.1
	ENSSSCP00045028869.1
	ENSSSCP00055038792.1

RefSeq Acc Id:	XP_013843898 ⟸ XM_013988444
- Peptide Label:	isoform X1
- UniProtKB:	F1SL08 (UniProtKB/TrEMBL), A0A8D1RQM7 (UniProtKB/TrEMBL), A0A8D0UGX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRRSVPRVLGLGLMLVFALNLLLILYAKGILQKLALGDIQERLHLPPSEWNRTAMERLSRLEMDLQHLKEHMKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWG EDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKG LAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGEN VELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQG ASPHKSPIMYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDFKPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS hide sequence

RefSeq Acc Id:	XP_020948101 ⟸ XM_021092442
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0QMX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWGEDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAI ASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKGLAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNW ELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGENVELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGI DIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQGASPHKSPIMYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDF KPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS hide sequence

RefSeq Acc Id:	XP_020948102 ⟸ XM_021092443
- Peptide Label:	isoform X2
- UniProtKB:	A0A8D0QMX8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWGEDLSEEEQ KKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKGLAAARNTG REAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGENVELSLRVW QCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQGASPHKSPI MYRCHQYSSQNVYYHLTGEFYVGPLIAKTDAEDNCLTDPGKGEKPTLEPCSKAVENGLYIHWDFKPGRAVINRATKRCLEIKKASLDGYLLVLQTCTAQVWTIQYTVRNWGSS hide sequence

RefSeq Acc Id:	XP_020948103 ⟸ XM_021092444
- Peptide Label:	isoform X3
- UniProtKB:	A0A8D0UGX6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLRRSVPRVLGLGLMLVFALNLLLILYAKGILQKLALGDIQERLHLPPSEWNRTAMERLSRLEMDLQHLKEHMKLAMKQPKNVDTPPEWVRDESRPVQKAVEAKERARKDQKPKELLFPNSVLFQKWG EDLSEEEQKKAEALFQKFGYNVYLSDQLPLARTIPDTRDPRCLWKRYSSQLPSLSVILIFVNEALSVIQRAIASIISRTPPQLLKEIILVDDFSSNGELKAHLDEEIKLYNQKSPGLLKIIRHAERKG LAAARNTGREAATADVVAILDAHVEVNVGWAEPILARIQQDRTVIVSPVFDKIHFDTLELEKYALAVDGFNWELWCRYDSLPKAWVDLHDVTAPVKSPSIMGILAANRLFLEEIGSLDGGMATYGGEN VELSLRVWQCGGRIEVLPCSRVAHLERHHKPYALDLSLPLMRNALRVAEIWMDEHKDMVYMAWNIPLQNSGIDIGDISFRKALREKLKCRSFDWYLKNVYPVLKPIHSIVGYGRMKNPLDESVCLDQG ASPHKSPIMYRCHQYSSQGRKQRLREERG hide sequence

Ensembl Acc Id:

ENSSSCP00000000765 ⟸ ENSSSCT00000000781

Protein Domains

Glycosyltransferase 2-like Ricin B lectin

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000000718	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00025007665	UniProtKB/TrEMBL
	ENSSSCG00045024435	UniProtKB/TrEMBL
	ENSSSCG00055024678	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000000781	ENTREZGENE
	ENSSSCT00000000781.4	UniProtKB/TrEMBL
	ENSSSCT00000101498.1	UniProtKB/TrEMBL
	ENSSSCT00025010213.1	UniProtKB/TrEMBL
	ENSSSCT00025010221.1	UniProtKB/TrEMBL
	ENSSSCT00045041618.1	UniProtKB/TrEMBL
	ENSSSCT00055048605.1	UniProtKB/TrEMBL
Gene3D-CATH	2.80.10.50	UniProtKB/TrEMBL
	Spore Coat Polysaccharide Biosynthesis Protein SpsA, Chain A	UniProtKB/TrEMBL
InterPro	GalNAc-T	UniProtKB/TrEMBL
	Glyco_trans_2-like	UniProtKB/TrEMBL
	Nucleotide-diphossugar_trans	UniProtKB/TrEMBL
	Ricin_B-like_lectins	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
KEGG Report	ssc:100522491	UniProtKB/TrEMBL
NCBI Gene	GALNT8	ENTREZGENE
PANTHER	N-ACETYLGALACTOSAMINYLTRANSFERASE	UniProtKB/TrEMBL
	POLYPEPTIDE N-ACETYLGALACTOSAMINYLTRANSFERASE 8-RELATED	UniProtKB/TrEMBL
Pfam	Glycos_transf_2	UniProtKB/TrEMBL
	Ricin_B_lectin	UniProtKB/TrEMBL
PROSITE	RICIN_B_LECTIN	UniProtKB/TrEMBL
Superfamily-SCOP	SSF50370	UniProtKB/TrEMBL
	SSF53448	UniProtKB/TrEMBL
UniProt	A0A8D0QMX8	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D0UGX6	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1RQM7	ENTREZGENE, UniProtKB/TrEMBL
	A0A8W4FES6_PIG	UniProtKB/TrEMBL
	F1SL08	ENTREZGENE, UniProtKB/TrEMBL
VGNC ID	VGNC:109553	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar