C13H21orf91 (chromosome 13 C21orf91 homolog) - Rat Genome Database

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Gene: C13H21orf91 (chromosome 13 C21orf91 homolog) Sus scrofa
Analyze
Symbol: C13H21orf91 (Ensembl: C21orf91)
Name: chromosome 13 C21orf91 homolog
RGD ID: 13924366
Description: INVOLVED IN cerebral cortex neuron differentiation (inferred); positive regulation of dendritic spine development (inferred); ASSOCIATED WITH Alzheimer's disease (ortholog); Neurodevelopmental Disorders (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: protein EURL homolog
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13182,374,587 - 182,409,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113182,374,587 - 182,409,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213192,507,038 - 192,540,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Molecular Function

References

Genomics

Comparative Map Data
C13H21orf91
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13182,374,587 - 182,409,289 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113182,374,587 - 182,409,062 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213192,507,038 - 192,540,595 (-)NCBISscrofa10.2Sscrofa10.2susScr3
C21orf91
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382117,788,974 - 17,819,356 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2117,788,974 - 17,819,386 (-)EnsemblGRCh38hg38GRCh38
GRCh372119,161,291 - 19,191,673 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362118,083,155 - 18,113,574 (-)NCBINCBI36Build 36hg18NCBI36
Build 342118,086,994 - 18,112,513NCBI
Celera214,339,748 - 4,370,167 (-)NCBICelera
Cytogenetic Map21q21.1NCBI
HuRef214,550,222 - 4,580,642 (-)NCBIHuRef
CHM1_12118,722,458 - 18,752,865 (-)NCBICHM1_1
T2T-CHM13v2.02116,148,342 - 16,178,714 (-)NCBIT2T-CHM13v2.0
D16Ertd472e
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391678,337,224 - 78,373,576 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1678,337,226 - 78,373,596 (-)EnsemblGRCm39 Ensembl
GRCm381678,540,336 - 78,576,688 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1678,540,338 - 78,576,708 (-)EnsemblGRCm38mm10GRCm38
MGSCv371678,540,583 - 78,576,913 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361678,426,122 - 78,459,239 (-)NCBIMGSCv36mm8
Celera1678,762,071 - 78,791,896 (-)NCBICelera
Cytogenetic Map16C3.1NCBI
cM Map1645.36NCBI
C11h21orf91
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81130,716,034 - 30,749,292 (-)NCBIGRCr8
mRatBN7.21117,229,129 - 17,262,307 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1117,229,138 - 17,262,483 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1125,878,233 - 25,911,298 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01118,610,326 - 18,643,400 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01117,769,043 - 17,802,121 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01117,073,296 - 17,120,235 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1117,076,980 - 17,130,120 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01120,732,095 - 20,735,084 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41117,446,314 - 17,476,625 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1117,221,974 - 17,249,856 (-)NCBICelera
Cytogenetic Map11q11NCBI
LOC102013799
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540719,094,101 - 19,124,370 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540719,093,931 - 19,124,997 (-)NCBIChiLan1.0ChiLan1.0
C22H21orf91
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22214,283,766 - 14,314,161 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1219,111,542 - 9,141,925 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0214,524,103 - 4,554,496 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12117,877,448 - 17,918,985 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2117,888,992 - 17,918,985 (-)Ensemblpanpan1.1panPan2
C31H21orf91
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13114,225,807 - 14,254,801 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3114,230,000 - 14,254,756 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3114,239,257 - 14,267,958 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03114,253,948 - 14,282,661 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3114,253,990 - 14,282,587 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13114,256,210 - 14,284,885 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03114,261,717 - 14,290,398 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03114,666,956 - 14,695,648 (-)NCBIUU_Cfam_GSD_1.0
CUNH21orf91
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497115,271,247 - 15,299,794 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650510,194,961 - 10,219,126 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650510,190,248 - 10,219,502 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CUNH21orf91
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1274,773,057 - 74,802,684 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl274,773,356 - 74,807,405 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605079,188,089 - 79,218,635 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH21orf91
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247456,185,226 - 6,201,376 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247456,180,514 - 6,213,299 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C13H21orf91
584 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000053190   ⟹   ENSSSCP00000032323
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13182,374,587 - 182,409,289 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000071053   ⟹   ENSSSCP00000066073
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13182,375,773 - 182,383,777 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000075909   ⟹   ENSSSCP00000068981
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13182,378,774 - 182,409,289 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000085247   ⟹   ENSSSCP00000072385
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl13182,374,584 - 182,409,472 (-)Ensembl
RefSeq Acc Id: XM_003483342   ⟹   XP_003483390
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.113182,374,587 - 182,409,062 (-)NCBI
Sequence:
RefSeq Acc Id: XP_003483390   ⟸   XM_003483342
- UniProtKB: A0A8D2BUT5 (UniProtKB/TrEMBL),   A0A286ZL93 (UniProtKB/TrEMBL),   A0A480XY50 (UniProtKB/TrEMBL),   A0A4X1UHT3 (UniProtKB/TrEMBL),   A0A8D0JVT2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000072385   ⟸   ENSSSCT00000085247
Ensembl Acc Id: ENSSSCP00000068981   ⟸   ENSSSCT00000075909
Ensembl Acc Id: ENSSSCP00000066073   ⟸   ENSSSCT00000071053
Ensembl Acc Id: ENSSSCP00000032323   ⟸   ENSSSCT00000053190


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000033025 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025005333 UniProtKB/TrEMBL
  ENSSSCG00030032050 UniProtKB/TrEMBL
  ENSSSCG00035066065 UniProtKB/TrEMBL
  ENSSSCG00040048685 UniProtKB/TrEMBL
  ENSSSCG00045032560 UniProtKB/TrEMBL
  ENSSSCG00050039257 UniProtKB/TrEMBL
  ENSSSCG00055009533 UniProtKB/TrEMBL
  ENSSSCG00060076493 UniProtKB/TrEMBL
  ENSSSCG00065026228 UniProtKB/TrEMBL
  ENSSSCG00070016904 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000053190 ENTREZGENE
  ENSSSCT00000053190.2 UniProtKB/TrEMBL
  ENSSSCT00000075909.2 UniProtKB/TrEMBL
  ENSSSCT00025007171.1 UniProtKB/TrEMBL
  ENSSSCT00025007177.1 UniProtKB/TrEMBL
  ENSSSCT00025007180.1 UniProtKB/TrEMBL
  ENSSSCT00030044327.1 UniProtKB/TrEMBL
  ENSSSCT00030044351.1 UniProtKB/TrEMBL
  ENSSSCT00035088985.1 UniProtKB/TrEMBL
  ENSSSCT00035088989.1 UniProtKB/TrEMBL
  ENSSSCT00040065660.1 UniProtKB/TrEMBL
  ENSSSCT00040065708.1 UniProtKB/TrEMBL
  ENSSSCT00045055591.1 UniProtKB/TrEMBL
  ENSSSCT00045055655.1 UniProtKB/TrEMBL
  ENSSSCT00045055713.1 UniProtKB/TrEMBL
  ENSSSCT00050052962.1 UniProtKB/TrEMBL
  ENSSSCT00050052968.1 UniProtKB/TrEMBL
  ENSSSCT00055018577.1 UniProtKB/TrEMBL
  ENSSSCT00055018601.1 UniProtKB/TrEMBL
  ENSSSCT00060104952.1 UniProtKB/TrEMBL
  ENSSSCT00065035219.1 UniProtKB/TrEMBL
  ENSSSCT00065035221.1 UniProtKB/TrEMBL
  ENSSSCT00065035222.1 UniProtKB/TrEMBL
  ENSSSCT00070033292.1 UniProtKB/TrEMBL
  ENSSSCT00070033295.1 UniProtKB/TrEMBL
InterPro EURL_prot UniProtKB/TrEMBL
KEGG Report ssc:100736918 UniProtKB/TrEMBL
NCBI Gene C13H21orf91 ENTREZGENE
PANTHER PROTEIN EURL HOMOLOG UniProtKB/TrEMBL
  PTHR15961 UniProtKB/TrEMBL
Pfam EURL UniProtKB/TrEMBL
UniProt A0A286ZL93 ENTREZGENE
  A0A480XY50 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UCZ2_PIG UniProtKB/TrEMBL
  A0A4X1UHT3 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2RDV8_PIG UniProtKB/TrEMBL
  A0A8D0JVT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0QMP9_PIG UniProtKB/TrEMBL
  A0A8D2BUT5 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZL93 UniProtKB/TrEMBL
VGNC ID VGNC:85930 ENTREZGENE