TSTD3 (thiosulfate sulfurtransferase like domain containing 3) - Rat Genome Database

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Gene: TSTD3 (thiosulfate sulfurtransferase like domain containing 3) Sus scrofa
Analyze
Symbol: TSTD3
Name: thiosulfate sulfurtransferase like domain containing 3
RGD ID: 13923416
Description: ENCODES a protein that exhibits thiosulfate-cyanide sulfurtransferase activity (inferred); transferase activity (inferred); ASSOCIATED WITH Dwarfism (ortholog); Experimental Liver Cirrhosis (ortholog); Leber congenital amaurosis 19 (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: thiosulfate sulfurtransferase (rhodanese)-like domain containing 3; thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 3
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1166,459,042 - 66,467,856 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,135,765 - 75,141,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References
Additional References at PubMed
PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TSTD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1166,459,042 - 66,467,856 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2175,135,765 - 75,141,389 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TSTD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38699,521,049 - 99,587,775 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl699,520,976 - 99,589,899 (+)EnsemblGRCh38hg38GRCh38
GRCh37699,968,925 - 100,035,651 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366100,075,591 - 100,087,784 (+)NCBINCBI36Build 36hg18NCBI36
Celera6100,618,093 - 100,623,927 (+)NCBICelera
Cytogenetic Map6q16.2NCBI
HuRef697,409,239 - 97,421,428 (+)NCBIHuRef
CHM1_16100,231,848 - 100,244,022 (+)NCBICHM1_1
T2T-CHM13v2.06100,695,384 - 100,761,219 (+)NCBIT2T-CHM13v2.0
Tstd3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39421,757,382 - 21,767,211 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl421,757,382 - 21,767,212 (-)EnsemblGRCm39 Ensembl
GRCm38421,757,382 - 21,767,211 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl421,757,382 - 21,767,212 (-)EnsemblGRCm38mm10GRCm38
MGSCv37421,684,529 - 21,694,358 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36421,683,986 - 21,703,739 (-)NCBIMGSCv36mm8
Celera421,502,393 - 21,512,223 (-)NCBICelera
Cytogenetic Map4A3NCBI
cM Map48.91NCBI
Tstd3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8540,091,438 - 40,101,509 (-)NCBIGRCr8
mRatBN7.2535,294,652 - 35,304,093 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl535,294,645 - 35,304,101 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx537,418,966 - 37,428,457 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0539,011,711 - 39,021,186 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0538,951,221 - 38,960,694 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0535,892,783 - 35,902,243 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl535,892,737 - 35,902,262 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0540,549,081 - 40,558,549 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4536,493,245 - 36,502,679 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera534,311,972 - 34,320,649 (-)NCBICelera
Cytogenetic Map5q21NCBI
Tstd3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541125,392,449 - 25,403,237 (+)NCBIChiLan1.0ChiLan1.0
TSTD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25119,563,788 - 119,633,326 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16117,448,432 - 117,512,599 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0697,361,666 - 97,426,467 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16101,244,302 - 101,307,789 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6101,249,439 - 101,278,532 (+)Ensemblpanpan1.1panPan2
TSTD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11257,718,754 - 57,732,075 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1257,718,821 - 57,731,014 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1257,475,801 - 57,489,902 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01258,540,339 - 58,554,457 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1258,540,370 - 58,555,330 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11257,896,824 - 57,910,923 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01257,743,563 - 57,757,828 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01257,989,361 - 58,002,710 (+)NCBIUU_Cfam_GSD_1.0
Tstd3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440511890,016,573 - 90,016,837 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049364789,228,258 - 9,229,545 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TSTD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11374,303,207 - 74,362,551 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604046,634,587 - 46,695,257 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tstd3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248105,487,669 - 5,498,787 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TSTD3
181 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


RefSeq Acc Id: XM_013992718   ⟹   XP_013848172
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1166,459,042 - 66,467,856 (+)NCBI
Sequence:
RefSeq Acc Id: XP_013848172   ⟸   XM_013992718
- Sequence:
Protein Domains
Rhodanese


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00025049181 UniProtKB/TrEMBL
  ENSSSCG00035079003 UniProtKB/TrEMBL
  ENSSSCG00040022448 UniProtKB/TrEMBL
  ENSSSCG00045011722 UniProtKB/TrEMBL
  ENSSSCG00050054255 UniProtKB/TrEMBL
  ENSSSCG00055011180 UniProtKB/TrEMBL
  ENSSSCG00065029890 UniProtKB/TrEMBL
  ENSSSCG00070024116 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00025066945.1 UniProtKB/TrEMBL
  ENSSSCT00025067030.1 UniProtKB/TrEMBL
  ENSSSCT00035107901.1 UniProtKB/TrEMBL
  ENSSSCT00035107916.1 UniProtKB/TrEMBL
  ENSSSCT00040030089.1 UniProtKB/TrEMBL
  ENSSSCT00040030104.1 UniProtKB/TrEMBL
  ENSSSCT00045019853.1 UniProtKB/TrEMBL
  ENSSSCT00045019879.1 UniProtKB/TrEMBL
  ENSSSCT00050073974.1 UniProtKB/TrEMBL
  ENSSSCT00050073978.1 UniProtKB/TrEMBL
  ENSSSCT00055021927.1 UniProtKB/TrEMBL
  ENSSSCT00055021941.1 UniProtKB/TrEMBL
  ENSSSCT00055021957.1 UniProtKB/TrEMBL
  ENSSSCT00065040320.1 UniProtKB/TrEMBL
  ENSSSCT00070048155.1 UniProtKB/TrEMBL
Gene3D-CATH 3.40.250.10 UniProtKB/TrEMBL
InterPro Rhodanese-like_dom UniProtKB/TrEMBL
  Rhodanese-like_dom_sf UniProtKB/TrEMBL
  Thiosulphate_STrfase_CS UniProtKB/TrEMBL
NCBI Gene TSTD3 ENTREZGENE
PANTHER THIOSULFATE SULFURTRANSFERASE RDL2, MITOCHONDRIAL-RELATED UniProtKB/TrEMBL
  THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 3 UniProtKB/TrEMBL
Pfam Rhodanese UniProtKB/TrEMBL
PROSITE RHODANESE_2 UniProtKB/TrEMBL
  RHODANESE_3 UniProtKB/TrEMBL
SMART RHOD UniProtKB/TrEMBL
Superfamily-SCOP SSF52821 UniProtKB/TrEMBL
UniProt A0A4X1VIK4_PIG UniProtKB/TrEMBL
  A0A8D0UTL4_PIG UniProtKB/TrEMBL
  A0A8D1Q890_PIG UniProtKB/TrEMBL
VGNC ID VGNC:109545 ENTREZGENE