MAMLD1 (mastermind like domain containing 1) - Rat Genome Database

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Gene: MAMLD1 (mastermind like domain containing 1) Sus scrofa
Analyze
Symbol: MAMLD1
Name: mastermind like domain containing 1
RGD ID: 13922908
Description: INVOLVED IN regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH autistic disorder (ortholog); centronuclear myopathy X-linked (ortholog); disorder of sexual development (ortholog); FOUND IN centrosome (inferred); Golgi apparatus (inferred); nuclear body (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: mastermind-like domain-containing protein 1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,120,300 - 122,234,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,120,275 - 122,233,692 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X139,798,663 - 139,849,364 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
MAMLD1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX122,120,300 - 122,234,472 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X122,120,275 - 122,233,692 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X139,798,663 - 139,849,364 (+)NCBISscrofa10.2Sscrofa10.2susScr3
MAMLD1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X150,361,572 - 150,514,173 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX150,361,422 - 150,514,178 (+)EnsemblGRCh38hg38GRCh38
GRCh37X149,529,839 - 149,682,443 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X149,364,378 - 149,433,104 (+)NCBINCBI36Build 36hg18NCBI36
Build 34X149,284,287 - 149,353,007NCBI
CeleraX149,780,137 - 149,930,293 (+)NCBICelera
Cytogenetic MapXq28NCBI
HuRefX138,395,371 - 138,540,296 (+)NCBIHuRef
CHM1_1X149,405,878 - 149,556,741 (+)NCBICHM1_1
T2T-CHM13v2.0X148,629,198 - 148,781,835 (+)NCBIT2T-CHM13v2.0
Mamld1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X70,093,642 - 70,199,662 (+)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX70,093,846 - 70,199,662 (+)EnsemblGRCm39 Ensembl
GRCm38X71,050,036 - 71,156,056 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX71,050,240 - 71,156,056 (+)EnsemblGRCm38mm10GRCm38
MGSCv37X68,303,431 - 68,407,892 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X67,310,812 - 67,415,273 (+)NCBIMGSCv36mm8
CeleraX62,025,072 - 62,129,462 (+)NCBICelera
Cytogenetic MapXA7.2NCBI
cM MapX36.33NCBI
Mamld1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554986,215,236 - 6,273,091 (+)NCBIChiLan1.0ChiLan1.0
MAMLD1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X150,496,713 - 150,650,656 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X150,500,311 - 150,653,158 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X140,009,726 - 140,163,667 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X149,946,922 - 150,098,418 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX149,945,753 - 150,098,431 (+)Ensemblpanpan1.1panPan2
MAMLD1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X118,654,403 - 118,776,603 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 EnsemblX118,655,026 - 118,775,758 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX104,029,119 - 104,150,998 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X120,867,624 - 120,989,528 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX120,868,269 - 120,988,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X117,593,736 - 117,715,613 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X120,035,880 - 120,157,850 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X119,954,185 - 120,076,087 (+)NCBIUU_Cfam_GSD_1.0
Mamld1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X116,214,193 - 116,314,464 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367141,951,966 - 2,042,394 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367141,941,974 - 2,042,246 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
MAMLD1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X124,955,942 - 125,093,874 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX125,025,375 - 125,083,319 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606562,647,415 - 62,791,452 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Mamld1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624923783,563 - 903,381 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624923783,354 - 903,291 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in MAMLD1
1839 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium
Low 1 2 16 2 1 1
Below cutoff 4 3 1 3 2 5 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSSSCT00000013930   ⟹   ENSSSCP00000013547
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,120,300 - 122,234,470 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000043136   ⟹   ENSSSCP00000055370
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,120,300 - 122,234,470 (+)Ensembl
RefSeq Acc Id: ENSSSCT00000101818   ⟹   ENSSSCP00000075346
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX122,228,848 - 122,234,472 (+)Ensembl
RefSeq Acc Id: XM_005657934   ⟹   XP_005657991
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,180,472 - 122,233,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079612   ⟹   XP_020935271
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,120,884 - 122,233,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079613   ⟹   XP_020935272
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,120,875 - 122,233,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079614   ⟹   XP_020935273
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,120,869 - 122,233,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079615   ⟹   XP_020935274
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,120,812 - 122,233,692 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021079616   ⟹   XP_020935275
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X122,120,275 - 122,233,692 (+)NCBI
Sequence:
Reference Protein Sequences
RefSeq Acc Id: XP_020935275   ⟸   XM_021079616
- Peptide Label: isoform X3
- UniProtKB: A0A287BA19 (UniProtKB/TrEMBL),   A0A4X1SXT4 (UniProtKB/TrEMBL),   A0A8D1T1L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935274   ⟸   XM_021079615
- Peptide Label: isoform X3
- UniProtKB: A0A287BA19 (UniProtKB/TrEMBL),   A0A4X1SXT4 (UniProtKB/TrEMBL),   A0A8D1T1L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935273   ⟸   XM_021079614
- Peptide Label: isoform X3
- UniProtKB: A0A287BA19 (UniProtKB/TrEMBL),   A0A4X1SXT4 (UniProtKB/TrEMBL),   A0A8D1T1L9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935272   ⟸   XM_021079613
- Peptide Label: isoform X2
- UniProtKB: A0A8D0TBL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020935271   ⟸   XM_021079612
- Peptide Label: isoform X1
- UniProtKB: A0A8D0TBL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_005657991   ⟸   XM_005657934
- Peptide Label: isoform X1
- UniProtKB: A0A8D0TBL4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000013547   ⟸   ENSSSCT00000013930
RefSeq Acc Id: ENSSSCP00000055370   ⟸   ENSSSCT00000043136
RefSeq Acc Id: ENSSSCP00000075346   ⟸   ENSSSCT00000101818


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012741 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025073045 UniProtKB/TrEMBL
  ENSSSCG00040049496 UniProtKB/TrEMBL
  ENSSSCG00045005231 UniProtKB/TrEMBL
  ENSSSCG00060012591 UniProtKB/TrEMBL
  ENSSSCG00065034248 UniProtKB/TrEMBL
  ENSSSCG00070004573 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013930.5 UniProtKB/TrEMBL
  ENSSSCT00000043136 ENTREZGENE
  ENSSSCT00000043136.3 UniProtKB/TrEMBL
  ENSSSCT00000101818.1 UniProtKB/TrEMBL
  ENSSSCT00025100491.1 UniProtKB/TrEMBL
  ENSSSCT00040066707.1 UniProtKB/TrEMBL
  ENSSSCT00045008689.1 UniProtKB/TrEMBL
  ENSSSCT00060016532.1 UniProtKB/TrEMBL
  ENSSSCT00065046591.1 UniProtKB/TrEMBL
  ENSSSCT00065046596.1 UniProtKB/TrEMBL
  ENSSSCT00065046603.1 UniProtKB/TrEMBL
  ENSSSCT00070008640.1 UniProtKB/TrEMBL
  ENSSSCT00070008646.1 UniProtKB/TrEMBL
  ENSSSCT00070008649.1 UniProtKB/TrEMBL
  ENSSSCT00070008661.1 UniProtKB/TrEMBL
  ENSSSCT00070008664.1 UniProtKB/TrEMBL
  ENSSSCT00070008674.1 UniProtKB/TrEMBL
InterPro MAMLD1 UniProtKB/TrEMBL
NCBI Gene MAMLD1 ENTREZGENE
PANTHER MASTERMIND-LIKE DOMAIN-CONTAINING PROTEIN 1 UniProtKB/TrEMBL
  PTHR15275 UniProtKB/TrEMBL
UniProt A0A287BA19 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SVM9_PIG UniProtKB/TrEMBL
  A0A4X1SXC0_PIG UniProtKB/TrEMBL
  A0A4X1SXJ9_PIG UniProtKB/TrEMBL
  A0A4X1SXT4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SXU9_PIG UniProtKB/TrEMBL
  A0A8D0TBL4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D1T1L9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4F7T4_PIG UniProtKB/TrEMBL
  F1RQ29_PIG UniProtKB/TrEMBL