DDA1 (DET1 and DDB1 associated 1) - Rat Genome Database

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Gene: DDA1 (DET1 and DDB1 associated 1) Sus scrofa
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Symbol: DDA1
Name: DET1 and DDB1 associated 1
RGD ID: 13909816
Description: INVOLVED IN protein polyubiquitination (inferred); regulation of proteasomal ubiquitin-dependent protein catabolic process (inferred); FOUND IN Cul4-RING E3 ubiquitin ligase complex (inferred); INTERACTS WITH deoxynivalenol
Type: protein-coding
RefSeq Status: MODEL
Previously known as: DET1- and DDB1-associated protein 1
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,367,166 - 60,376,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,367,168 - 60,376,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X39,048,424 - 39,049,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
DDA1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl260,367,166 - 60,376,958 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1260,367,168 - 60,376,986 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X39,048,424 - 39,049,396 (+)NCBISscrofa10.2Sscrofa10.2susScr3
DDA1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381917,309,563 - 17,323,298 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1917,309,518 - 17,323,298 (+)EnsemblGRCh38hg38GRCh38
GRCh371917,420,372 - 17,434,107 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361917,281,352 - 17,292,099 (+)NCBINCBI36Build 36hg18NCBI36
Celera1917,322,066 - 17,335,837 (+)NCBICelera
Cytogenetic Map19p13.11NCBI
HuRef1916,986,896 - 17,000,542 (+)NCBIHuRef
CHM1_11917,419,810 - 17,433,538 (+)NCBICHM1_1
T2T-CHM13v2.01917,444,453 - 17,458,138 (+)NCBIT2T-CHM13v2.0
Dda1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39871,921,816 - 71,928,743 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl871,921,843 - 71,928,742 (+)EnsemblGRCm39 Ensembl
GRCm38871,469,172 - 71,476,099 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl871,469,199 - 71,476,098 (+)EnsemblGRCm38mm10GRCm38
MGSCv37873,993,093 - 74,000,334 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36874,398,176 - 74,405,605 (+)NCBIMGSCv36mm8
Celera873,988,411 - 73,995,652 (+)NCBICelera
Cytogenetic Map8B3.3NCBI
cM Map834.43NCBI
Dda1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81618,190,280 - 18,197,914 (+)NCBIGRCr8
mRatBN7.21618,156,310 - 18,163,938 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1618,156,386 - 18,163,937 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1618,207,332 - 18,214,967 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01619,339,959 - 19,347,620 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01618,260,262 - 18,267,901 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01619,877,873 - 19,885,501 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1619,881,122 - 19,885,500 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01619,739,254 - 19,746,867 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41618,640,020 - 18,647,613 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1618,361,425 - 18,368,953 (+)NCBICelera
Cytogenetic Map16p14NCBI
Dda1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955524914,106 - 920,677 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955524912,752 - 920,714 (-)NCBIChiLan1.0ChiLan1.0
DDA1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22022,180,027 - 22,191,516 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11921,186,631 - 21,198,124 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01916,797,750 - 16,808,427 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11917,771,929 - 17,785,280 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1917,771,925 - 17,785,267 (+)Ensemblpanpan1.1panPan2
DDA1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12045,440,046 - 45,448,564 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2045,439,682 - 45,448,525 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2045,350,929 - 45,361,728 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02045,924,256 - 45,934,792 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.12045,160,765 - 45,171,442 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02045,570,667 - 45,581,228 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02045,846,763 - 45,857,074 (-)NCBIUU_Cfam_GSD_1.0
Dda1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118203,997,029 - 204,004,995 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365963,545,669 - 3,554,134 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365963,545,669 - 3,554,134 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DDA1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1615,815,956 - 15,826,873 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl615,816,030 - 15,826,232 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660743,614,962 - 3,626,017 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dda1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624908631,432 - 637,104 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624908631,429 - 637,158 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in DDA1
55 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000049071   ⟹   ENSSSCP00000031635
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl260,367,166 - 60,372,343 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000072660   ⟹   ENSSSCP00000061305
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl260,367,166 - 60,376,958 (-)Ensembl
Ensembl Acc Id: ENSSSCT00000096611   ⟹   ENSSSCP00000077797
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl260,369,236 - 60,376,925 (-)Ensembl
RefSeq Acc Id: XM_021083567   ⟹   XP_020939226
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1260,367,168 - 60,376,986 (-)NCBI
Sequence:
RefSeq Acc Id: XP_020939226   ⟸   XM_021083567
- UniProtKB: A0A4X1UHC4 (UniProtKB/TrEMBL),   A0A5G2QT12 (UniProtKB/TrEMBL),   A0A286ZJD1 (UniProtKB/TrEMBL),   A0A4X1UIQ1 (UniProtKB/TrEMBL),   A0A8D0MVI5 (UniProtKB/TrEMBL),   A0A8W4FHL0 (UniProtKB/TrEMBL),   A0A4X1UI54 (UniProtKB/TrEMBL),   A0A8D0WV49 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000031635   ⟸   ENSSSCT00000049071
Ensembl Acc Id: ENSSSCP00000061305   ⟸   ENSSSCT00000072660
Ensembl Acc Id: ENSSSCP00000077797   ⟸   ENSSSCT00000096611

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000031251 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00015018566 UniProtKB/TrEMBL
  ENSSSCG00025015186 UniProtKB/TrEMBL
  ENSSSCG00030041949 UniProtKB/TrEMBL
  ENSSSCG00040043025 UniProtKB/TrEMBL
  ENSSSCG00045036660 UniProtKB/TrEMBL
  ENSSSCG00050054267 UniProtKB/TrEMBL
  ENSSSCG00055008746 UniProtKB/TrEMBL
  ENSSSCG00060019721 UniProtKB/TrEMBL
  ENSSSCG00065004191 UniProtKB/TrEMBL
  ENSSSCG00065047036 UniProtKB/TrEMBL
  ENSSSCG00070016985 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000049071.3 UniProtKB/TrEMBL
  ENSSSCT00000072660 ENTREZGENE
  ENSSSCT00000072660.2 UniProtKB/TrEMBL
  ENSSSCT00000096611.1 UniProtKB/TrEMBL
  ENSSSCT00015024484.1 UniProtKB/TrEMBL
  ENSSSCT00025020351.1 UniProtKB/TrEMBL
  ENSSSCT00025020367.1 UniProtKB/TrEMBL
  ENSSSCT00030058362.1 UniProtKB/TrEMBL
  ENSSSCT00030058377.1 UniProtKB/TrEMBL
  ENSSSCT00040057601.1 UniProtKB/TrEMBL
  ENSSSCT00040057676.1 UniProtKB/TrEMBL
  ENSSSCT00045063147.1 UniProtKB/TrEMBL
  ENSSSCT00045063195.1 UniProtKB/TrEMBL
  ENSSSCT00050073987.1 UniProtKB/TrEMBL
  ENSSSCT00055017075.1 UniProtKB/TrEMBL
  ENSSSCT00060026652.1 UniProtKB/TrEMBL
  ENSSSCT00060026657.1 UniProtKB/TrEMBL
  ENSSSCT00065005733.1 UniProtKB/TrEMBL
  ENSSSCT00065064316.1 UniProtKB/TrEMBL
  ENSSSCT00070033450.1 UniProtKB/TrEMBL
  ENSSSCT00070033453.1 UniProtKB/TrEMBL
  ENSSSCT00070033462.1 UniProtKB/TrEMBL
InterPro DDA1 UniProtKB/TrEMBL
  DDA1_N UniProtKB/TrEMBL
NCBI Gene DDA1 ENTREZGENE
PANTHER DET1- AND DDB1-ASSOCIATED PROTEIN 1 UniProtKB/TrEMBL
  PTHR31879 UniProtKB/TrEMBL
Pfam DDA1 UniProtKB/TrEMBL
UniProt A0A286ZJD1 ENTREZGENE
  A0A4X1UHC4 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UI54 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1UIQ1 ENTREZGENE, UniProtKB/TrEMBL
  A0A5G2QT12 ENTREZGENE
  A0A8D0MVI5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0WV49 ENTREZGENE, UniProtKB/TrEMBL
  A0A8W4FHL0 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A286ZJD1 UniProtKB/TrEMBL
  A0A5G2QT12 UniProtKB/TrEMBL
VGNC ID VGNC:87199 ENTREZGENE