LOC100739507 (WAP four-disulfide core domain protein 5-like) - Rat Genome Database

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Advanced Search (OLGA)
Gene: LOC100739507 (WAP four-disulfide core domain protein 5-like) Sus scrofa
Analyze
Symbol: LOC100739507 (Ensembl: WFDC5)
Name: WAP four-disulfide core domain protein 5-like (Ensembl:WAP four-disulfide core domain 5)
RGD ID: 13901896
Description: ENCODES a protein that exhibits peptidase inhibitor activity (inferred); ASSOCIATED WITH adenosine deaminase deficiency (ortholog); focal epilepsy (ortholog); T-Cell Immunodeficiency, Recurrent Infections, and Autoimmunity with or without Cardiac Malformations (ortholog); FOUND IN extracellular region (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: WAP four-disulfide core domain 5; WFDC5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,499,935 - 47,506,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,499,800 - 47,506,298 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21752,999,548 - 53,004,474 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
LOC100739507
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1747,499,935 - 47,506,306 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11747,499,800 - 47,506,298 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21752,999,548 - 53,004,474 (+)NCBISscrofa10.2Sscrofa10.2susScr3
WFDC5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382045,109,463 - 45,116,319 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2045,109,452 - 45,115,174 (-)EnsemblGRCh38hg38GRCh38
GRCh372043,738,104 - 43,744,960 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362043,171,507 - 43,177,217 (-)NCBINCBI36Build 36hg18NCBI36
Build 342043,171,506 - 43,177,217NCBI
Celera2040,446,736 - 40,452,445 (-)NCBICelera
Cytogenetic Map20q13.12NCBI
HuRef2040,479,993 - 40,485,712 (-)NCBIHuRef
CHM1_12043,640,836 - 43,646,556 (-)NCBICHM1_1
T2T-CHM13v2.02046,845,367 - 46,852,223 (-)NCBIT2T-CHM13v2.0
Wfdc5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392164,018,245 - 164,024,662 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2164,018,247 - 164,024,662 (-)EnsemblGRCm39 Ensembl
GRCm382164,176,325 - 164,182,742 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2164,176,327 - 164,182,742 (-)EnsemblGRCm38mm10GRCm38
MGSCv372164,002,061 - 164,008,478 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv362163,868,802 - 163,874,182 (-)NCBIMGSCv36mm8
Celera2170,107,877 - 170,114,294 (-)NCBICelera
Cytogenetic Map2H3NCBI
cM Map284.6NCBI
Wfdc5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83173,268,410 - 173,274,253 (-)NCBIGRCr8
mRatBN7.23152,849,025 - 152,854,868 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3152,849,025 - 152,854,904 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx3156,656,516 - 156,662,359 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03165,155,456 - 165,161,299 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03162,899,871 - 162,905,829 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.03160,567,805 - 160,573,978 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3160,567,805 - 160,573,978 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03166,752,479 - 166,758,652 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43155,116,781 - 155,122,624 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.13155,023,347 - 155,028,636 (-)NCBI
Celera3151,497,132 - 151,502,959 (-)NCBICelera
Cytogenetic Map3q42NCBI
Wfdc5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544512,279,799 - 12,283,506 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495544512,279,799 - 12,284,819 (+)NCBIChiLan1.0ChiLan1.0
WFDC5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22150,842,463 - 50,850,292 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12050,835,570 - 50,843,399 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02041,440,007 - 41,446,864 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12042,532,556 - 42,538,105 (-)NCBIpanpan1.1PanPan1.1panPan2
WFDC5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12432,487,339 - 32,492,660 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2432,487,348 - 32,510,990 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2432,132,739 - 32,137,748 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02433,198,174 - 33,231,042 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2433,198,183 - 33,203,385 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12432,459,480 - 32,492,329 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02432,574,535 - 32,607,555 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02433,116,370 - 33,149,476 (-)NCBIUU_Cfam_GSD_1.0
Wfdc5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024408640192,205,744 - 192,211,283 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049365147,659,499 - 7,664,318 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WFDC5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1218,702,404 - 18,708,119 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl218,702,644 - 18,707,188 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605067,351,679 - 67,365,660 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wfdc5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247909,387,902 - 9,393,179 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247909,386,787 - 9,393,060 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in LOC100739507
133 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
hemolymphoid system
mesenchyme
mesoderm
reproductive system
respiratory system
4 1 2 1 1 1

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_003483964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AEMK02000106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSSSCT00000008082   ⟹   ENSSSCP00000007867
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl1747,499,935 - 47,506,306 (-)Ensembl
RefSeq Acc Id: XM_003483964   ⟹   XP_003484012
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.11747,499,800 - 47,506,298 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003484012 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000007867.3
RefSeq Acc Id: XP_003484012   ⟸   XM_003483964
- Sequence:
Ensembl Acc Id: ENSSSCP00000007867   ⟸   ENSSSCT00000008082
Protein Domains
WAP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000007384 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000008082.4 UniProtKB/TrEMBL
Gene3D-CATH 4.10.75.10 UniProtKB/TrEMBL
InterPro Elafin-like_sf UniProtKB/TrEMBL
  WAP_dom UniProtKB/TrEMBL
  WAP_four-disulfide_core UniProtKB/TrEMBL
NCBI Gene LOC100739507 ENTREZGENE
PANTHER WAP FOUR-DISULFIDE CORE DOMAIN PROTEIN 5 UniProtKB/TrEMBL
  WHEY ACDIC PROTEIN WAP UniProtKB/TrEMBL
Pfam WAP UniProtKB/TrEMBL
PRINTS 4DISULPHCORE UniProtKB/TrEMBL
PROSITE WAP UniProtKB/TrEMBL
SMART WAP UniProtKB/TrEMBL
Superfamily-SCOP SSF57256 UniProtKB/TrEMBL
UniProt F1SDR4_PIG UniProtKB/TrEMBL