TEAD3 (TEA domain transcription factor 3) - Rat Genome Database

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Gene: TEAD3 (TEA domain transcription factor 3) Sus scrofa
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Symbol: TEAD3
Name: TEA domain transcription factor 3
RGD ID: 13881077
Description: ENCODES a protein that exhibits DNA binding (inferred); DNA-binding transcription factor activity (inferred); DNA-binding transcription factor activity, RNA polymerase II-specific (inferred); INVOLVED IN positive regulation of stem cell population maintenance (ortholog); positive regulation of transcription by RNA polymerase II (ortholog); ASSOCIATED WITH fundus dystrophy (ortholog); genetic disease (ortholog); proteasome-associated autoinflammatory syndrome 1 (ortholog); FOUND IN nucleus (inferred); transcription regulator complex (inferred)
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: transcription enhancer factor 5; transcriptional enhancer factor TEF-5
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,336,560 - 31,361,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,337,890 - 31,351,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,072,129 - 36,100,663 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:21305651   PMID:22301074   PMID:30032202  


Genomics

Comparative Map Data
TEAD3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl731,336,560 - 31,361,835 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1731,337,890 - 31,351,452 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2736,072,129 - 36,100,663 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TEAD3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38635,473,597 - 35,497,079 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl635,473,597 - 35,497,079 (-)EnsemblGRCh38hg38GRCh38
GRCh37635,441,374 - 35,464,856 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36635,549,352 - 35,572,839 (-)NCBINCBI36Build 36hg18NCBI36
Build 34635,549,353 - 35,572,763NCBI
Celera636,995,352 - 37,018,841 (-)NCBICelera
Cytogenetic Map6p21.31NCBI
HuRef635,162,129 - 35,185,618 (-)NCBIHuRef
CHM1_1635,443,385 - 35,466,891 (-)NCBICHM1_1
T2T-CHM13v2.0635,296,673 - 35,320,158 (-)NCBIT2T-CHM13v2.0
Tead3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391728,550,645 - 28,569,779 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1728,550,645 - 28,569,791 (-)EnsemblGRCm39 Ensembl
GRCm381728,331,671 - 28,350,805 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1728,331,671 - 28,350,817 (-)EnsemblGRCm38mm10GRCm38
MGSCv371728,468,620 - 28,487,750 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361728,059,260 - 28,077,735 (-)NCBIMGSCv36mm8
Celera1728,885,499 - 28,904,627 (-)NCBICelera
Cytogenetic Map17A3.3NCBI
cM Map1714.66NCBI
Tead3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8206,393,786 - 6,413,177 (-)NCBIGRCr8
mRatBN7.2206,392,053 - 6,411,446 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl206,392,053 - 6,411,446 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx207,104,678 - 7,124,077 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0206,466,508 - 6,485,905 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0206,945,984 - 6,965,360 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0207,911,562 - 7,930,949 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl207,908,226 - 7,930,929 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.02010,111,923 - 10,131,306 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4206,572,336 - 6,591,723 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1206,572,541 - 6,592,859 (-)NCBI
Celera207,948,439 - 7,967,826 (-)NCBICelera
Cytogenetic Map20p12NCBI
Tead3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554373,387,228 - 3,405,069 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554373,387,812 - 3,405,232 (-)NCBIChiLan1.0ChiLan1.0
TEAD3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2549,940,007 - 49,963,568 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1645,804,899 - 45,832,359 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0635,034,138 - 35,057,644 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1636,127,219 - 36,150,620 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl636,127,219 - 36,140,360 (-)Ensemblpanpan1.1panPan2
TEAD3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1124,610,663 - 4,627,817 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl124,611,144 - 4,632,888 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha124,626,143 - 4,648,061 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0124,948,482 - 4,970,954 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl124,948,507 - 4,969,873 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1124,609,226 - 4,631,461 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0124,687,985 - 4,710,121 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0124,788,248 - 4,810,321 (-)NCBIUU_Cfam_GSD_1.0
Tead3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494640,182,635 - 40,195,083 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647623,766,012 - 23,779,349 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647623,766,021 - 23,776,785 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TEAD3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11736,626,528 - 36,651,367 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1736,637,113 - 36,651,752 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604435,385,138 - 35,410,436 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tead3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475421,971,445 - 21,986,557 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475421,971,362 - 21,987,128 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TEAD3
296 total Variants

Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system hemolymphoid system musculoskeletal system nervous system renal system reproductive system respiratory system
High
Medium 1
Low 10 4 3 5 2 14 2 2 1
Below cutoff 8

Sequence


RefSeq Acc Id: ENSSSCT00000001722   ⟹   ENSSSCP00000001678
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl731,336,561 - 31,361,597 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000071242   ⟹   ENSSSCP00000061788
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl731,336,609 - 31,361,613 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079379   ⟹   ENSSSCP00000064467
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl731,336,590 - 31,339,645 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000079468   ⟹   ENSSSCP00000063034
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl731,336,560 - 31,361,835 (-)Ensembl
RefSeq Acc Id: ENSSSCT00000091268   ⟹   ENSSSCP00000060059
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl731,336,560 - 31,361,835 (-)Ensembl
RefSeq Acc Id: NM_001037966   ⟹   NP_001033055
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1731,337,890 - 31,351,452 (-)NCBI
Sequence:
RefSeq Acc Id: NP_001033055   ⟸   NM_001037966
- UniProtKB: Q2VI02 (UniProtKB/TrEMBL),   A0A4X1SYQ8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSSSCP00000001678   ⟸   ENSSSCT00000001722
RefSeq Acc Id: ENSSSCP00000064467   ⟸   ENSSSCT00000079379
RefSeq Acc Id: ENSSSCP00000063034   ⟸   ENSSSCT00000079468
RefSeq Acc Id: ENSSSCP00000060059   ⟸   ENSSSCT00000091268
RefSeq Acc Id: ENSSSCP00000061788   ⟸   ENSSSCT00000071242
Protein Domains
TEA   YAP binding


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000001544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00025045312 UniProtKB/TrEMBL
  ENSSSCG00030074096 UniProtKB/TrEMBL
  ENSSSCG00035021427 UniProtKB/TrEMBL
  ENSSSCG00040011632 UniProtKB/TrEMBL
  ENSSSCG00045036897 UniProtKB/TrEMBL
  ENSSSCG00050016847 UniProtKB/TrEMBL
  ENSSSCG00055013898 UniProtKB/TrEMBL
  ENSSSCG00060077700 UniProtKB/TrEMBL
  ENSSSCG00065046443 UniProtKB/TrEMBL
  ENSSSCG00070005137 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000001722.5 UniProtKB/TrEMBL
  ENSSSCT00000071242.1 UniProtKB/TrEMBL
  ENSSSCT00000079379.1 UniProtKB/TrEMBL
  ENSSSCT00000079468.2 UniProtKB/TrEMBL
  ENSSSCT00000091268 ENTREZGENE
  ENSSSCT00000091268.2 UniProtKB/TrEMBL
  ENSSSCT00025061572.1 UniProtKB/TrEMBL
  ENSSSCT00030103876.1 UniProtKB/TrEMBL
  ENSSSCT00035027949.1 UniProtKB/TrEMBL
  ENSSSCT00040015243.1 UniProtKB/TrEMBL
  ENSSSCT00045063587.1 UniProtKB/TrEMBL
  ENSSSCT00050022990.1 UniProtKB/TrEMBL
  ENSSSCT00055027428.1 UniProtKB/TrEMBL
  ENSSSCT00060107083.1 UniProtKB/TrEMBL
  ENSSSCT00060107094.1 UniProtKB/TrEMBL
  ENSSSCT00065063611.1 UniProtKB/TrEMBL
  ENSSSCT00065063616.1 UniProtKB/TrEMBL
  ENSSSCT00065063630.1 UniProtKB/TrEMBL
  ENSSSCT00070009801.1 UniProtKB/TrEMBL
  ENSSSCT00070009807.1 UniProtKB/TrEMBL
  ENSSSCT00070009812.1 UniProtKB/TrEMBL
Gene3D-CATH 2.70.50.80 UniProtKB/TrEMBL
  6.10.20.40 UniProtKB/TrEMBL
InterPro TEA/ATTS_dom UniProtKB/TrEMBL
  TEA/ATTS_sf UniProtKB/TrEMBL
  TEF-5 UniProtKB/TrEMBL
  TEF_metazoa UniProtKB/TrEMBL
  YBD UniProtKB/TrEMBL
KEGG Report ssc:654299 UniProtKB/TrEMBL
NCBI Gene TEAD3 ENTREZGENE
PANTHER TRANSCRIPTIONAL ENHANCER FACTOR TEF RELATED UniProtKB/TrEMBL
  TRANSCRIPTIONAL ENHANCER FACTOR TEF-5 UniProtKB/TrEMBL
Pfam TEA UniProtKB/TrEMBL
  YBD UniProtKB/TrEMBL
PIRSF TEF UniProtKB/TrEMBL
  TEF-5 UniProtKB/TrEMBL
PRINTS TEADOMAIN UniProtKB/TrEMBL
PROSITE TEA_1 UniProtKB/TrEMBL
  TEA_2 UniProtKB/TrEMBL
SMART TEA UniProtKB/TrEMBL
UniProt A0A4X1SXW3_PIG UniProtKB/TrEMBL
  A0A4X1SYQ8 ENTREZGENE, UniProtKB/TrEMBL
  A0A4X1SZP6_PIG UniProtKB/TrEMBL
  A0A5G2Q7J7_PIG UniProtKB/TrEMBL
  A0A5G2QBE2_PIG UniProtKB/TrEMBL
  A0A5G2QEE7_PIG UniProtKB/TrEMBL
  A0A5G2QJ33_PIG UniProtKB/TrEMBL
  F1RYZ3_PIG UniProtKB/TrEMBL
  Q2VI02 ENTREZGENE, UniProtKB/TrEMBL
VGNC ID VGNC:93855 ENTREZGENE