MTPAP (mitochondrial poly(A) polymerase)

Gene: MTPAP (mitochondrial poly(A) polymerase) Sus scrofa

Analyze

Symbol:

MTPAP

Name:

mitochondrial poly(A) polymerase

RGD ID:

13874478

Description:

ENCODES a protein that exhibits ATP binding (inferred); identical protein binding (inferred); magnesium ion binding (inferred); INVOLVED IN histone mRNA catabolic process (inferred); mitochondrial RNA 3'-end processing (inferred); RNA 3'-end processing (inferred); ASSOCIATED WITH genetic disease (ortholog); melanoma (ortholog); spastic ataxia (ortholog); FOUND IN intracellular membrane-bounded organelle (inferred); mitochondrion (inferred); nucleoplasm (inferred); INTERACTS WITH deoxynivalenol

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

mitochondrial poly(A) RNA polymerase; poly(A) RNA polymerase, mitochondrial

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

Sscrofa11.1 - Pig Sscrofa11.1 Assembly

Position:

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	40,764,396 - 40,789,061 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	40,764,098 - 40,869,608 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	45,197,646 - 45,225,482 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

melanoma (ISO)

spastic ataxia (ISO)

spastic ataxia 4 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

deoxynivalenol (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

histone mRNA catabolic process (IEA)

mitochondrial RNA 3'-end processing (IEA)

RNA 3'-end processing (IEA)

Cellular Component

intracellular membrane-bounded organelle (IEA)

mitochondrion (IEA)

nucleoplasm (IEA)

Molecular Function

ATP binding (IEA)

identical protein binding (IEA)

magnesium ion binding (IEA)

manganese ion binding (IEA)

poly(A) RNA polymerase activity (IEA)

protein binding (ISO)

protein homodimerization activity (IEA)

transferase activity (IEA)

UTP binding (IEA)

References

Additional References at PubMed

PMID:14681463	PMID:22297614	PMID:30032202

Genomics

Comparative Map Data

MTPAP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	10	40,764,396 - 40,789,061 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	10	40,764,098 - 40,869,608 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	10	45,197,646 - 45,225,482 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MTPAP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	10	30,309,801 - 30,349,278 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	10	30,309,801 - 30,374,448 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	10	30,598,730 - 30,638,207 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	10	30,641,765 - 30,678,254 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	10	30,641,764 - 30,678,254	NCBI
Celera	10	30,363,675 - 30,403,196 (-)	NCBI		Celera
Cytogenetic Map	10	p11.23	NCBI
HuRef	10	30,317,607 - 30,357,218 (-)	NCBI		HuRef
CHM1_1	10	30,598,696 - 30,638,239 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	10	30,340,827 - 30,380,279 (-)	NCBI		T2T-CHM13v2.0

Mtpap
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	4,375,573 - 4,399,888 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	4,375,592 - 4,397,330 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	4,375,589 - 4,399,888 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	4,375,592 - 4,397,330 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	4,375,590 - 4,397,328 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	4,375,590 - 4,396,782 (+)	NCBI		MGSCv36	mm8
Celera	18	4,420,341 - 4,442,079 (+)	NCBI		Celera
Cytogenetic Map	18	A1	NCBI
cM Map	18	2.77	NCBI

Mtpap
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	58,015,979 - 58,036,735 (-)	NCBI		GRCr8
mRatBN7.2	17	53,320,739 - 53,341,500 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	53,320,741 - 53,341,538 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	56,487,928 - 56,508,696 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	60,490,865 - 60,511,635 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	54,652,729 - 54,673,519 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	56,046,507 - 56,068,185 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	56,046,509 - 56,068,125 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	54,083,463 - 54,105,399 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	61,847,984 - 61,868,867 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	17	61,859,420 - 61,879,734 (-)	NCBI
Celera	17	49,316,835 - 49,337,431 (-)	NCBI		Celera
Cytogenetic Map	17	q12.1	NCBI

Mtpap
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955429	21,767,547 - 21,794,885 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955429	21,768,011 - 21,792,481 (+)	NCBI	ChiLan1.0	ChiLan1.0

MTPAP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	8	42,973,311 - 43,020,922 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	10	42,978,638 - 43,026,256 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	10	30,463,414 - 30,500,245 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	10	30,818,591 - 30,854,542 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	10	30,818,599 - 30,854,542 (-)	Ensembl	panpan1.1		panPan2

MTPAP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	16,666,742 - 16,695,753 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	16,666,749 - 16,695,709 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	14,162,942 - 14,191,932 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	14,907,486 - 14,936,502 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	14,907,486 - 14,936,473 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	14,352,326 - 14,381,322 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	14,238,649 - 14,267,606 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	14,511,673 - 14,540,814 (-)	NCBI		UU_Cfam_GSD_1.0

Mtpap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	9,285,880 - 9,314,897 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936613	3,836,308 - 3,866,542 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936613	3,836,461 - 3,865,240 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MTPAP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	9	29,918,227 - 29,966,806 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	9	29,919,008 - 29,951,006 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666051	35,995,452 - 36,027,820 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Mtpap
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624805	2,651,121 - 2,672,899 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624805	2,651,464 - 2,727,894 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in MTPAP
4021 total Variants

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	hemolymphoid system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
High
Medium				1		2
Low	10	4	3	4	2	21	2	3	3
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001317082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001299270	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_002336108	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AEMK02000074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK234687	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CU929949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GFLN01109151	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	GU345804	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSSSCT00000012060 ⟹ ENSSSCP00000011752

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	10	40,764,396 - 40,789,061 (+)	Ensembl

RefSeq Acc Id:

ENSSSCT00000048465 ⟹ ENSSSCP00000054344

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1 Ensembl	10	40,764,396 - 40,793,398 (+)	Ensembl

RefSeq Acc Id:

NM_001317082 ⟹ NP_001304011

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	10	40,764,417 - 40,789,023 (+)	NCBI

Sequence:

show sequence

ATGGCGGCCCGCGGCGTGGGACTGTTGACCCGGTTGTCCCTCGGTGCTCAGAGAAATCAAGTCC
AGCGTGCTCTCCGTAGGCTTCTCAGTTGTCCGGGAACGGTGGCCGCAGACCTCAGGAGAGAAGA
GCAGTTCTCGGGGAGCGCGGAGACAGGCTCTGAAGACAGGATTCCCAAGAAGAGATTCTCAGAG
GTGCAAGAAGAAAGACGAGAACAGGCCCAGCGGACAGTGTTAATCCACTGCCCAAATAAAATCA
GTGAGAAGAAGTTTCTCCAGTATTTATCCCAACACGGACCCGTTAACAGCCACTTCTTCTATGA
AAGCTTTGGTCTTTATGCCGTTGTAGAATTTTGTCAGAAGGAAAGTGTAGCTTCACTGCAGAGT
GTGACTCGTACGCCAAGCCGGGGCGCAGAGGCTGCAATTCCGTTCAGGTCCCGGTACTTCAGTT
TAAAGCTGAGGAATCCATCAAGCCAGCCTTCGGAACAGTCAAGTGTTCAGTGTAGTAATCAGTC
CTCTCCTTCAAGCAAGAAGCTTTTTGAATTACTTTGTTGTGCAGAAAGTGTAGATGATCAGCTG
ACTGCCCTCCTGAAGACATTCCAGCTCACAGAAGAGAACACCAAACTCCGCTATCTCACCTGCT
CTCTTATTGAGGACATAGCGGCTGCATATTTTCCAGGCTGTGCAGTCAGACCCTTTGGCTCTTC
AGTGAACAGTTTTGGGAAATTAGGATGTGATTTGGACATGTTTTTGGATCTGGATGAAATTGGA
AACTTTAGTGCCCAAAAGGCTTCAGGAAATTTTCTGATGGAATTTCAAGTGAAAAATGTTCCTT
CGGAAAGAATTGTGACTCAGAAGATCCTGTCTGTGATAGGGGAGTGCCTTGATCACTTTGGCCC
CGGCTGTGTCGGGGTGCAGAAGATCCTAAATGCTCGGTGTCCCCTGGTCAGGTTCTCGCACCAG
GCCTCCGGGTTTCAGTGTGATTTGACCACTAACAATAGGATCGCCTTGAAAGTTCTGAGCTGCT
TTATTCTGTACGGTGCCCTGGACTCACGCGTGAGAGCCTTGGTGTTCAGCATCCGATGCTGGGC
TCGAGTGCATTCGTTAACAAGTAGTATTCCTGGTGCTTGGATTACAAATTTCTCCCTCACCATG
ATGGTCATCTTCTTTCTCCAGAGGAGATCACCCCCTATTCTTCCAACACTAGACTCCTTGAAAT
CCCTAGCAGATGCAGAAGATAAGTGTATAATAGAAGGCCACAACTGTACATTTGTTCGTGACTT
GAATAAAATTAAACCTTCAGGAAACACAGAATCACTAGAATTACTACTGAAAGAATTTTTTGAA
TATTTTGGAAATTTCGCTTTCAATAAAAATTCCATAAATATTCGACAGGGAGGGGAACAAAACA
AACCTGAATCTTCTCCACTGCACATTCAGAATCCATTTGAAACCTCTCTCAACATAAGCAAAAA
TGTAAGTCAAAGCCAGCTGCAAAAATTTGTAGAGCTGGCCAGAGAAAGCGCCTGGATTTTACAT
CAGGAAGTTAAAGAACGCCAGTCAAGCAACCAGCCCTGGGGGCTGGCCACCCTGCTGCTGCCTT
CTGTAGCAAATAACATATCTTTTGTCAAGAAGCGAAAGAAGCCTGCAAGTGAAAGAATTAAAAA
CTTGTTGGAATCCATAAAAAGTAGCAGCACAGAACATCCCACAGACACCAATGGGAAAAGAGCT
GTTAACACTCAGGCATGATGGTGGCTGCTTTGCCTTCAGAACTGGTTTTTGTCCTGTACGATGA
TCTCTGGACCTGGAAGAACTGCGTGAAACTCACAGATCACCCTGTCTTCTGCTGTCTCTCTTCA
TGATCTCTTCTCTTTGGGCCCCTTAACCTGGTCCGATGTCCTGCGACATTTTTGGTGTGATGCC
CAGGGATGCTGTGGTGAAACGTTAGCCGAGGGAACAGGTGACAGAAGATTGGAATGTGCTTCAG
ATAAACCATACAGATCAGTTTTAGAATCAAACCGTTGTTGATTCCACATCAGTCCCAGGGTGTA
AATCATT

hide sequence

RefSeq Acc Id:

XR_001299270

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	10	40,764,098 - 40,797,964 (+)	NCBI

Sequence:

show sequence

GTTATGGTTTATTATATTCTTAGGTTCCCAAGTCAGTGCTCTTTCCTCCTGCCCTTGCTCTCTG
GTTCTGTTTTCACGGCTATGTGAAAGAGTAGGTGGTGTGCTCGTTCTCTGGGGGTCTTCTTTTG
GAGAACCCGGAGAGCGGAAATAAAACGTGTTGAAAACCTCAGCCATCCCCATTCAAACCGCGTC
TCAATTTCTTTTACACGTGAACGTTTTTCTCCTACTTTGACCCTCTAGGCTTCCCATCCTCTGG
GCCTCGGCGCACATGCGCAGACGCCCGGCGACCTCCTGGCTCGGAGTCTCCGCCGCTCTGACAA
TGGCGGCCCGCGGCGTGGGACTGTTGACCCGGTTGTCCCTCGGTGCTCAGAGAAATCAAGTCCA
GCGTGCTCTCCGTAGGCTTCTCAGTTGTCCGGGAACGGTGGCCGCAGACCTCAGGAGAGAAGAG
CAGTTCTCGGGGAGCGCGGAGACAGGCTCTGAAGACAGGATTCCCAAGAAGAGATTCTCAGAGG
TGCAAGAAGAAAGACGAGAACAGGCCCAGCGGACAGTGTTAATCCACTGCCCAAATAAAATCAG
TGAGAAGAAGTTTCTCCAGTATTTATCCCAACACGGACCCGTTAACAGCCACTTCTTCTATGAA
AGCTTTGGTCTTTATGCCGTTGTAGAATTTTGTCAGAAGGAAAGTGTAGCTTCACTGCAGAGTG
TGACTCGTACGCCAAGCCGGGGCGCAGAGGCTGCAATTCCATTCAGGTCCCGGTACTTCAGTTT
AAAGTTGAGGAATCCATCAAGCCAGCCTTCGGAACAGTCAAGTGTTCAGTGTAGTAATCAGTCC
TCTCCTTCAAGCAAGAAGCTTTTTGAATTACTTTGTTGTGCAGAAAGTGTAGATGATCAGCTGA
CTGCCCTCCTGAAGACATTCCAGCTCACAGAAGAGAACACCAAACTCCGCTATCTCACCTGCTC
TCTTATTGAGGACATAGCGGCTGCATATTTTCCAGGCTGTGCAGTCAGACCCTTTGGCTCTTCA
GTGAACAGTTTTGGGAAATTAGGATGTGATTTGGACATGTTTTTGGATCTGGATGAAATTGGAA
ACTTTAGTGCCCAAAAGGCTTCAGGAAATTTTCTGATGGAATTTCAAGTGAAAAATGTTCCTTC
GGAAAGAATTGTGACTCAGAAGATCCTGTCTGTGATAGGGGAGTGCCTTGATCACTTTGGCCCC
GGCTGTGTCGGGGTGCAGAAGATCCTAAATGCTCGGTGTCCCCTGGTCAGGTTCTCGCACCAGG
CCTCCGGGTTTCAGTGTGATTTGACCACTAACAATAGGATCGCCTTGAAAAGTTCCGAGCTGCT
TTATCTGTACGGTGCCCTGGACTCACGCGTGAGAGCCTTGGTGTTCAGCATCCGATGCTGGGCT
CGAGTGCATTCGTTAACAAGTAGTATTCCTGGTGCTTGGATTACAAATTTCTCCCTCACCATGA
TGGTCATCTTCTTTCTCCAGAGGAGATCACCCCCTATTCTTCCAACACTAGACTCCTTGAAATC
CCTAGCGGATGCAGAAGATAAGTGTATAATAGAAGGCCACAACTGTACATTTGTTCGTGACTTG
AATAAAATTAAACCTTCAGGAAACACAGAATCACTAGAATTACTACTGAAAGAATTTTTTGAAT
ATTTTGGAAATTTCGCTTTCAATAAAAATTCCATAAATATTCGACAGGGAAGGGAACAAAACAA
ACCTGAATCTTCTCCACTGCACATTCAGAATCCATTTGAAACCTCTCTCAACATAAGCAAAAAT
GTAAGTCAAAGCCAGCTGCAAAAATTTGTAGAGCTGGCCAGAGAAAGCGCCTGGATTTTACATC
AGGAAGTTAAAGAACGCCAGTCAAGCAACCAGCCCTGGGGGCTGGCCACCCTGCTGCTGCCTTC
TGTAGCAAATAACATATCTTTTGTCAAGAAGCGAAAGAAGCCTGCAAGTGAAAGAATTAAAAAC
TTGTTGGAATCCATAAAAAGTAGCAGCACAGAACATCCCACAGACACCAATGGGAAAAGAGCTG
TTAACACTCAGGCATGATGGTGGCTGCTTTGCCTTCAGAACTGGTTTTTGTCCTGTACGATGAT
CTCTGGACCTGGAAGAACTGCGTGAAACTCACAGATCACCCTGTCTTCTGCTGTCTCTCTTCAT
GATCTCTTCTCTTTGGGCCCCTTAACCTGGTCCGATGTCCTGCGACATTTTTGGTCTGATGCCC
AGGGATGCTGTGGTGAAACGTTAGCCGAGGGAACAGGTGACAGAAGATTGGAATGTGCTTCAGA
TAAACCATACAGATCAGTTTTAGAATCAAACCGTTGTTGATTCCACATCAGTCCCAGGGTGTAA
ATCATTGAAAAGAACTCTCTAGGGTGAGAACAGAATTAGACTGTTTCAAGTCACTTCATGTTCC
TAGAGATTCCTTGGCTTTAGAAGGACAGCTCTGTTCAGTTCCATACGGCCTGCTGGTGCCAGAG
TAGGAACATGCTCCCTTTGCATGCCTAAGTCTAAACCTGCGCAGTGAGCATCTGTGGCAGAAGC
GGCAGAAAGAGCAGCCGAGCCAGGTGGTGGCTCTCTCCACTCGCCAGAGCTTGGTACTCAGCTG
GTGAGTAGCTGTCATTGCGTCTTGATGCAGCGAAACCATCCAAAATGCTGTCACAAGGAGGAAA
TCTTTTCTGCCCAAGATGATCAGAAAAGGCTTCATCCATCACATAGAATAGGATAGGTCTTGAC
GGGAATTGTCATCTGTGTCGTCCAGAGCCAGGGCCTGGAGTTTGTCATTCTGGGAGCAGAAGTG
TAAATAGGAGCCAGGAGGAGGAGGCGTGTTTGGAGACCTGGCCGGCCAGGCCAGCAGGGATGGG
ATTTTGCTCTGGTACTCAGGGAATCAAGGCTGAGGGAGATGGTGAGACTGCCCATGGTGAGCCA
AGGAGGTGGTGTGTTTTCAGCGGGAAAGCGTTGAAGGTTTCTGTGTTACGGAAAAGTAGAAGCT
AAAGCACTGCTTTAGATGACTCATCTGTTAGCAAGCAGTTACCGAGCACTGCTCCTTTTTTTCT
TAGCAGATTTGAGTACCTTAGGTCCCATCATTAAATTCGGTAAAATTTGGCTGTGAAATTTTCC
ACAAAGGTCCAGAAGCTGATTTTCATATACCTCACAGGAGTCTTTCTCTAATGTTTAACAAGTA
AGTAAAGTTTAAGAGGTTTAAAGCGATCATCAGGAAATATCATCAGGTAATGACATATAATTTT
ATGTAAAGCCTTACTAATGAGAAATTCTTTGCAGTATATACTTGGAAAAGATTGAAAACATGAC
CAGAAATCACTTTTCACCTTGGGATGATGTTGGAAAATTTATTTTAAATACTTGAAAGGCTTAT
TTCAGTTTCCATGCTGAGTCCAATTACTTGTGGGTACATATTCCAACGAATATAAACATTACAG
CGTTCCTCTGGAATTCCCATGGAGCAGCTCCCAGAAAATGTCTACTTTAGATAGAATCTTTAAT
CTGTAATCTCTATGATATAGGATATATAAATCACCACATTTTAAAAATATACTACTCATTTTTT
TTTTTTTTGGTCTTTTGTCTTTTTTTTTTTTAGGGCTGCACTCGTGGCACATGGAAGTTCCCAG
GCTAGGGGTCCAATTGCAGCTGTAGCTGCCGGCCTACACCACAGCCACAGCAACTCGGGATCCG
AGCCACCTCTGCAACCTTCACTACAGCTCACAGCAACACTGGATCCTTAACCCACTGATCGACG
CCAGGGATCAAACCCCTGTCCTCATGGATGCCAGTCAGGTTCATTAACTGTTGAGCTATGACGG
GAACTCTGGAAAAATACACTACTCATATTTTAAATGTGATCCCTCATGTTACCTGTGCGTATGC
ATGTCCACCCATCGTTAAGAACTCAGTGGAGTCAAGGACGTATTAAATGCATTATTCACTTTTT
CTCTCTACCCTTCGATGAATCCATTTAAACTCTCATGGCAAAGTTTCTAAGCTTTGAGGATGTG
ATGCTGAGATGTTTTAAAGAGAATATTGGAAAGAGAGGACTTGAAACCATAAATGTTACACGGT
GAAGATACATGTATGATAAAATAGCTAATTTGGAATAGGCCAAGTCTAAGTAAATGAAAAAATA
TAAATTATAGATTGTTCTTTCTTCTGGGTTTATTTTGAAGTATGGCACATTGGAAACTTAAACT
ATCATCGATGCTGTCAAATGAAATGGAACAAATTAACAAAAGATTACGAATGAGGTCTGTGTTA
CGTTCTGTGTCACCACAGCTCATTAACATGTGACACTTGTCAAGTGCAGTGAAAGTTTGTACAT
TTTGAAGTTTTTCCTATTGCAGAGTTACTGGAATAGGATTTAGACTAATGTAACTTAATGATTA
GTGTTTTATAATTAATCTTTGCTAAGCTTAACACGTGGGCTTGGAGAATGATGAGAAGTGACAT
TAACATCTCTTTTACAAACTCTTAAAAACTGAGTCGAAGGTGGATTAATGAGGCTGGCTGATGT
TGCAATGGAATTTGAAGCTCAAAAATCTGTTTTTTTAAAATCCATGTAAAATGTAAATTATACT
TCTGTAGACATACATATCACTATAAAACTAGAGCAAGCTTGGCCTTATTTTTTTTTTTTTAGCA
GTTGATTTTGGTGACTTTAAAAGGGTTGTTTGTATGTGACAGCATCCCCCCTTTCTCCCAATTC
TCTAATTGAACCTACAGTAATAAGCATCCTTGGAGTTTCCCTGCTTTTCTTCTTGGCATCACTG
GTTATAAAGCTCAGTTACCAGTACTGAGTGGTTTCCTTTAGCTTTATATAATTGCGTTTTTAAA
AAAGGTTTACAGGAGATCCTGTCATGGCTCAGCAGAAGTGAATCTGACTAGCATTCATGAGGAC
GCAAGTTCAGTCCCTGGCCTTTCTCAGTGAGTTAAGGATCCGGTGTCGCAGTGAGCTATGGTGT
AGGTCACAGACGCTGCTCAGATCTCATGTTGCTGTGGCTGTGGCATAGGCCAATGGCTACAGCT
CCAATTTGACCCCTAGCCCAGAGACAGGTGCAGCCCTAAAAAGAAAAAAAAAAGTAAAAAAATT
TTTCACATTTTATATTTTTACTTGATCCCTTCTTTTTTTTTAAGAAATGATGACTAAGAGTAAC
GGTGAGCAGTGGTACTTGACTTACCGGTTGTTTGGTGATAAGATAGACTCAAATAATCAGTTTT
TATAGAAGACTGATTTCAAGAGCTTCACCCTCACCTCTGGACAGAGGACTGTCAAATCACTATT
TTAGTCCCACCGCTAGAACTTCATCATTATTGTGTATTGGACTTTGTGCTTCAGCTCCAAATCG
GCAGTTTAAATGAAAATTTTCTTCCTTAAAATTGGCTAACCTCTTAATTTGCCTATTTCTGTTG
TTGGTACCATTATTCTCAGCCACTTGAGTTCAAACTCTGAGATCCTTTTAGACTCCTTTTTTCT
CCTGTTTAATTAATCTCTCTCTGTTTCTGTTGGCATTAGCTTAGTTCACGTCAGTACCTATCTT
CTAATACACCAGTCTTTTGGCTTGTTTCCCAGCCCAGTGACCCCTTCTGTGATCCATGCGAACC
AATTTTCTAAGGAGTAGGAGTCAAGAAAGTACGTTTTATGGTAAATTAATATTAAATTATATGT
GTTTGTTTATTGTAAAGATACCTTGGAATTGTACAGAGCTTTAAGGTCATTCTAAATATCAGGG
AACATCTTTGTGTAGGTGTCCAAAACAGACACCGACTGAAGGTTCTAATTAGTCAAAAGCACTG
GTTTTTTCTCTAACATCAAACTGTTTATACACACTATTGACTTCTTAAAGTTTTCAAACTTCTC
TAGTAATAACAATCCCAAAATACTGGTACAACGGAGTCACTCATTCAGCAAATATTTCCCCGGA
TTGCTGTGTGCCAGACACTCTCCAACTGAGACGTAAATACCAAGAGAGACAAAAATTTTGAATT
GCTGGAAAAAATGATGTTTATTCCTGAAGAGCGAGGCTTAGTGTAAGGGTAACAGTTTTGCGTA
TGTATCAATTAATAAAGGTGCAACCAATTAAAATCCTGTAAGGATTTTTAAAAGAAACTTGAAA
CTCATTGGAAGTATATGAGGAAGAATAAATATATAAAAGTAGCCAGAAGAAATTTTTTTTTTTT
TTTTCTTTTTAGGGCCACACTTGTAGTATATAGAAGTTCCCAGGCTAGGGGTCCAATCTGAGCT
ACAGCTGTCTGCCACAGCCACAGCCACGACTCAGGATCTGAGCCGTGTCTGCAGCCTACACCAC
AGCTCACGGCAACACTGGATCTTTAACCCACTGATCAAGGCCAGGGATTGAATCTGCATCCTCT
TGGATACCAGTCAGGTTCATAACCATTGAGCCACTATAGAAACTCCAAAAAATTGTTTTATTTA
ATAAGTAACATTAAAATATAAGGCAAGGTAATTTAAACAATACTGCTGGCTTGAGATAGACAAA
TCTTTGGATCAGTACAGAAATATACTCAAACTATATATGGGAATTTATAGTAATAAAAGGCAAT
ATTTCAAGTCAATAGAAAGATGGATTATTCAGTAAATTGTGTTGGGACAACTGGTAGCTATTGG
AAAAGAAAAGTTTGACCCTAGTCTTACTCTTTACCCAAATAAATTCCAGGTGGGTCTGAATCTA
AATGTGAGGCGGGGGAGTGAAATCATAAAGTGCAAAAGAAATCATAGATGAATATTATAAACCT
AGGGTAGGGCAGGGTGCCTTTTCAAAGCATGACATGCATTTATGAAAGAATATATTGATAAGTT
TGACTACTTTAGAATGGAAAACTATACCACAAAGCAACCATAAATAAAGTTTAAAATTCTAATA
CTAATGAAAAGGGCCAATTTTTCTAATGAGCTCTACAAATCTAAAAGTAGTAGGCAAAGACAAC
TTACCTATTATGAAGAATTTGAACACAAGCAAAAGTAAACTGAAAAGTATTAGGAACTTGCATA
AATCCATCACCTCTTTCAGTAATTAACTCATGGCAATTGGCTTTAATCTATAACTGTATTTATT
TACCCCACCTGTATTATTTTAAGGATATTCCAGTCATACTATCATTTTATCTGTAAATATGTCC
ATTCCCTCCAGAACGATAAGAACTTTTCTCTAACATAATCACAAATCATTATCAAACCTACGTA
GAACAAACGCAAGCAATAATTCTCTAATATCTTCATATCCATTCAGAGTTCAGGTTTCCAGTTG
TGTTACGGATCTCACAGTTGTTTTTTCCCAAAGCACGTTTATTGGGGTCCGGTCATAGTCCCCA
CCTTGTGATTGGTTGATGCATTTCTGAAGTCTCTTGAATTTTTAGGTTTCTGCTTCATATCTCT
TTTTTTGTCTTTTTGCAAGTTTTTGAAGATACCGAGTTGTTTTTCTTATAGCGTTTCCTGCAAC
ATGGATTGTGCTGATTTTGTCAGCGCCTGTGATGATGTGCTGTGGAGTCATTCTTTAACTGTGT
CTAATTTTTTAAACCCTTTCATTGAATTCTCAATTCCAGGAGGTTTTGTTTGTTTGTTTCCAGT
TCTAGAATTTCTATTTGGTACTTAAAAAAAATTTTTTTTTCTAATTTTCTGACAAATTTCTCAG
GCACAACTTTGATTTTCTTATGAAGTCTGTCTAATAACTTGATTATCTGGTCGGCTCCTGTTTT
CCATGATGTTGTTGACCCCTCTCCTTGTGTACCTAACTGTTGTTACCCTGTGTGCTGACCTGGT
AGGTGAAAAACAGTAGATGACGTGAGGGAGGGCGATGCTGATCTTCCTTCAGGATGGATGTATT
TTTGCTTCCGGAAGGTGGGTAGGAGGACTTAGGATCCTGAATCACCGTGATCTAGAAAGAAAGG
GCATGAGATTTTGAAGTTGGATTGAGTTCCAGATTCTGGTTCATCTTTCCTCTCAGAATGTTAG
CCTCACCCAGAGCCAGGAGCGTTTACCAGGCCTCTTTTCCTTGATAGACCTTGAGCTCCAGTTC
TTGTCCCGTTTCCCCGTGACCTTTCTGAAAGCTCTGCTCAGCAGATGTCCAAATGGGCTCACCT
GTGGAGGTGTGCTTCTCCACGGCCCTGCAAGTCTTCACTGCCCTAGTAGCATCTGGATGCTCTC
AGGCAACTGCTTCTTGTTTTGCCTGGCGGAAAGTTGTCGTCAGTGAGAGAGGTGGTAGGTACTA
CCTAGTCTGATGTTACCGGAAGCCGGTGAGCTCTTTTTGATTCCAGCTTCTGATCCCTTATGTA
TATATATTTGTAATTTTATAGGACTGATGTATACTGTTCCTGTGGTTTACTTCCTTGCAAGGGA
CTTTCACATGTTGAGTTGGGCTTTGTATGTATAGCAGCGCAGACACCTGGCTGGAGGGAAAGCC
TGGTTCACCACTGAGGAAGCAAGGTACTGCATATGTTGCTGGGCTCTGCTTCAGAAATCGCCAG
CTTTTATTTCTGGATTGTGATTTCCTCATAGAGGATCTTGTACATGCCAATTCAAAGTTTAAAT
TTATGCCATGTGTGAATGAGTGGCAAAGCGCCCAAGTAAGAATGGGGAAAAATATCTTCTTTTT
CCAATCATATTCAGACACCTCAAACAACTAGGAAATACACTTTTTCTTCCAGCTTTCCAAAATA
TTTATCTGGGCTGAGGTCAAGAATGAAAGCATTTTAGGCCAAAGTGCATCTTGAAAATTTTATG
ATTTATAAAAGAGTTTAAAAATTCTCTTTTGAATTAAAGCCTATGTTATTATCAGAGTGTTTTA
TTTATGAACACACAATATTAGTGAATTTATATATCAGTGAAATATTTTAAGTGTATCTTTTCTG
TTATTTCTCTAATATTTGATTATTTCATGTTTGTGGTTTATTAGTTTAATTATCAGCATATATT
TGTTTAGGTAACAGAGAAGCAGCAATTAACAATATCTATATTATTTTGAGTTAGTTTTCAACTT
GTATTTATAATTTGCTACATATATTCTACCATTTATATATTTCCAGGAACTTTAATTTAGGTCT
CTAAATATTTAATAAAATCATTTTGCAGACTAAATTATTTGATGTTTTTATCTTGATTACTCTG
AACAAAGCCAGTACTTCAAGTTTATCCTTGATGCTTCAGGGTGAAAATTGTGTTAAGTAGTATT
TGAATTTAAATGTGGTTTTAAAATGTTTCTTAATTCTAAAGCCCTTTGTAGTTCCCATTTTCTA
AGTAATATTAGCTATATTTGATCTTCTGATGAAGAGAGACTTGACTATGATTAAATATGTGCAG
TACCATCCTGGAATAAATTTTTATTCATAGATTAATAAAATATGTGCAGCATGATTTAGGAGAA
AATATTTTAGGCCATTAAATTTAGTTACATAAGCTACAGTCTGTTTTAAATTCTGTGCAACAAA
ATCTGTTTTGCTTTAAAAATAAAATGTTCATTACACTGGGAAATGTGGAATATTAGTTTTTCAA
GGCCATCAGAAGCATCTCCAATCACATATTTAGGAAATTTTAAAAATACTAGTTTTAGCCTGTC
AACTTAATGGCATTTGTTATTATTGTCTAATTTTCTTATCTGTACTTAAAAGCCTTAAGAATGC
TTAATCTTTGA

hide sequence

RefSeq Acc Id:

XR_002336108

Type:

NON-CODING

Position:

Pig Assembly	Chr	Position (strand)	Source
Sscrofa11.1	10	40,764,098 - 40,869,608 (+)	NCBI

Sequence:

show sequence

GTTATGGTTTATTATATTCTTAGGTTCCCAAGTCAGTGCTCTTTCCTCCTGCCCTTGCTCTCTG
GTTCTGTTTTCACGGCTATGTGAAAGAGTAGGTGGTGTGCTCGTTCTCTGGGGGTCTTCTTTTG
GAGAACCCGGAGAGCGGAAATAAAACGTGTTGAAAACCTCAGCCATCCCCATTCAAACCGCGTC
TCAATTTCTTTTACACGTGAACGTTTTTCTCCTACTTTGACCCTCTAGGCTTCCCATCCTCTGG
GCCTCGGCGCACATGCGCAGACGCCCGGCGACCTCCTGGCTCGGAGTCTCCGCCGCTCTGACAA
TGGCGGCCCGCGGCGTGGGACTGTTGACCCGGTTGTCCCTCGGTGCTCAGAGAAATCAAGTCCA
GCGTGCTCTCCGTAGGCTTCTCAGTTGTCCGGGAACGGTGGCCGCAGACCTCAGGAGAGAAGAG
CAGTTCTCGGGGAGCGCGGAGACAGGCTCTGAAGACAGGATTCCCAAGAAGAGATTCTCAGAGG
TGCAAGAAGAAAGACGAGAACAGGCCCAGCGGACAGTGTTAATCCACTGCCCAAATAAAATCAG
TGAGAAGAAGTTTCTCCAGTATTTATCCCAACACGGACCCGTTAACAGCCACTTCTTCTATGAA
AGCTTTGGTCTTTATGCCGTTGTAGAATTTTGTCAGAAGGAAAGTGTAGCTTCACTGCAGAGTG
TGACTCGTACGCCAAGCCGGGGCGCAGAGGCTGCAATTCCATTCAGGTCCCGGTACTTCAGTTT
AAAGTTGAGGAATCCATCAAGCCAGCCTTCGGAACAGTCAAGTGTTCAGTGTAGTAATCAGTCC
TCTCCTTCAAGCAAGAAGCTTTTTGAATTACTTTGTTGTGCAGAAAGTGTAGATGATCAGCTGA
CTGCCCTCCTGAAGACATTCCAGCTCACAGAAGAGAACACCAAACTCCGCTATCTCACCTGCTC
TCTTATTGAGGACATAGCGGCTGCATATTTTCCAGGCTGTGCAGTCAGACCCTTTGGCTCTTCA
GTGAACAGTTTTGGGAAATTAGGATGTGATTTGGACATGTTTTTGGATCTGGATGAAATTGGAA
ACTTTAGTGCCCAAAAGGCTTCAGGAAATTTTCTGATGGAATTTCAAGTGAAAAATGTTCCTTC
GGAAAGAATTGTGACTCAGAAGATCCTGTCTGTGATAGGGGAGTGCCTTGATCACTTTGGCCCC
GGCTGTGTCGGGGTGCAGAAGATCCTAAATGCTCGGTGTCCCCTGGTCAGGTTCTCGCACCAGG
CCTCCGGGTTTCAGTGTGATTTGACCACTAACAATAGGATCGCCTTGAAAAGTTCCGAGCTGCT
TTATCTGTACGGTGCCCTGGACTCACGCGTGAGAGCCTTGGTGTTCAGCATCCGATGCTGGGCT
CGAGTGCATTCGTTAACAAGTAGTATTCCTGGTGCTTGGATTACAAATTTCTCCCTCACCATGA
TGGTCATCTTCTTTCTCCAGAGGAGATCACCCCCTATTCTTCCAACACTAGACTCCTTGAAATC
CCTAGCGGATGCAGAAGATAAGTGTATAATAGAAGGCCACAACTGTACATTTGTTCGTGACTTG
AATAAAATTAAACCTTCAGGAAACACAGAATCACTAGAATTACTACTGAAAGAATTTTTTGAAT
ATTTTGGAAATTTCGCTTTCAATAAAAATTCCATAAATATTCGACAGGGAAGGGAACAAAACAA
ACCTGAATCTTCTCCACTGCACATTCAGAATCCATTTGAAACCTCTCTCAACATAAGCAAAAAT
GTAAGTCAAAGCCAGCTGCAAAAATTTGTAGAGCTGGCCAGAGAAAGCGCCTGGATTTTACATC
AGGAAGTTAAAGAACGCCAGTCAAGCAACCAGCCCTGGGGGCTGGCCACCCTGCTGCTGCCTTC
TGTAGCAAATAACATATCTTTTGTCAAGAAGCGAAAGAAGCCTGCAAGTGAAAGAATTAAAAAC
TTGTTGGAATCCATAAAAAGTAGCAGCACAGAACATCCCACAGACACCAATGGGAAAAGAGCTG
TTAACACTCAGGCATGATGGTGGCTGCTTTGCCTTCAGAACTGGTTTTTGTCCTGTACGATGAT
CTCTGGACCTGGAAGAACTGCGTGAAACTCACAGATCACCCTGTCTTCTGCTGTCTCTCTTCAT
GATCTCTTCTCTTTGGGCCCCTTAACCTGGTCCGATGTCCTGCGACATTTTTGGTCTGATGCCC
AGGGATGCTGTGGTGAAACGTTAGCCGAGGGAACAGGTGACAGAAGATTGGAATGTGCTTCAGA
TAAACCATACAGATCAGTTTTAGAATCAAACCGTTGTTGATTCCACATCAGTCCCAGGGTGTAA
ATCATTGAAAAGAACTCTCTAGGGTGAGAACAGAATTAGACTGTTTCAAGTCACTTCATGTTCC
TAGAGATTCCTTGGCTTTAGAAGGACAGCTCTGTTCAGTTCCATACGGCCTGCTGGTGCCAGAG
TAGGAACATGCTCCCTTTGCATGCCTAAGTCTAAACCTGCGCAGTGAGCATCTGTGGCAGAAGC
GGCAGAAAGAGCAGCCGAGCCAGGTGGTGGCTCTCTCCACTCGCCAGAGCTTGGTACTCAGCTG
ATGTCTCATCCAAAAAAGTGAATGTAGCCAGGGGAAATCGTGTCCCCTTGGCTCCTGAAGTAGG
AAGGATACAGCCTCTTCATGCCAGAAGCAAAGGAAGCCATGGAAGCCATGGAGGACAATGGAAG
TGGTGGAAGCAGTAGAAGCAATGAAGGCAGTGGAGGCCAATGGAGGTCATGGAGGCAGTGGAGG
CACTGGAAGTGGTGGAAGCAATAGAATAAATGGAGGCAAAGGAGGCCATGGACAACAATGGAAG
TAACAGAGGCCATGGAAGCAGTGGAGGCAGTGGAGGCAAGGGAGGTAATGGAGGCCATGGAGGC
AGGGGAGGTAATGGAGGCAGTGAAAGTAGTGGAGGCAGTGAAGGCTGTGGAGGCAGTGGAAGCA
ATGGAGACGGTGGAAGCCATGGAAGGATTCGAGGCAATGAAGACAGTGGAGGCCGTGGAGGCCA
TCCAAGCAGTGGAAATAATGGAAGCCGTGGAGGCAGTGGAAACCAGGAGCTTTGTGAGAGACTA
AGTGCCTCTCTCTGTCTGAGCAGAATCTGTCTTGTACAGATTCTCGGACTGGCCACAGACACCC
ATCAACTGGGTCTAGGAGTGTGTCTGTATTACACGACTTTGCTTGTGAGCGAGTTCAGGAAAGT
CCGAGAGTTGGGCTTAATAGAACAGCTCCTTCCCCTTGACTTGAGCAAGGTGGTCTAATGACTC
TCAGGGTCTGTTCACACATGGTCCTGTCCCCTGCTGCGTATACCTGACCTTGCCCTGCCCACCA
CCTTGAGCTCAGGTGGGCTGCAGGTAGAGCTTTAGCCAATGAAATGTGAGCAAAAGCCTGCAAG
TGCTGGTGTGCACTTTGCTACAACTCGTCCTCCTGACAGCGATGGTGGATGAACCCAGAGCCTG
GGTCCCTGAGTGAAAGTAGTCTGAGCTGGTTTGCCCTGGACAGATGGTGTGAGCAAGAAATTAG
CTTTGTGTTCAACCACTGAGATTCTGTGGTCATTTAGAACTGTAATTAAACCCAGGCCATGTTG
GGCCATGAAATAATATGGGGACTCAAAATCCAGGCTTATTTTAAATTTGACACAGAACCCAGGA
GCCACAAAAGAGAAAGTATAAAGATGACCGCATTAAAAAAAATTTTTTTTCTTTTTATGGCCAC
ACCTGTAGCATATGGAAGTTCCAGGGCCAGGGGTCGAATCAGAGCTGCAGCTGCAGACCTACAT
CACAGCCACAGCAACGCCAGATCTGAGCCACATTTGCAAACTACGCCACAGCTTGAGGCAACAC
CTTATCCTTAACTGACTGAGCGAGGACAGGGATCGAACCTGAAACCTCATGGTTCCTAGTTGGA
CTCGTTAACCACTGAGCCACAACGGGAATTCCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTC
TTTTTAGGGCCAAGCCCTCAGCACATGGAGGTTCCCAGGCTAGGGGTCCAGTCAGAGCTGCAGC
CACTGGCCTATGCCACAGCCACAGCAACACCAGATCCGAGCTATGTCTGCGACCCACACCACAG
CTCATGGCAACACCAGATCCTCAAACCACTGAGCGAGGCCAGGGGTTGAACCCGAAACCTCATA
GTTCCTAGTTGGATTCATTAACCACTGAGCCACAACGGGAACTCCCTGTCAAGTTCTCAATCCA
CTAAGCCACAGTGGGAACTCCTAGATGACTACATTTTTAAAAGTCAAATTTCCTAAATGGCAAA
AGAGTCCCCATACAAAAGGCAAAAGAGGAAAAGTACACTGAGGGAGAATTGTTTGCATCTCCTG
GACTAAAGGCTTGCTTCTCTAGGGTACACGTGGCCTTTGTACTTGCTGTTTCTCTTCTGAAAAT
GCTGTTCCAACAGAGAGACTCATGACCCAGCCTCTCACCTGCTTTCAGCATTTGTTCAAATGCC
ATCTTCTCCGAGAGGCTTTCCTAAACGTGCAGCCTCCTCACGCAGCCTCTAGCCTTTCCCTGCT
TTATTCTTCTGATAATACAGTTGTCCAATGCTGTGTCCGTTTATTTACTTATTTACATTTGTCC
GTCTCCATCCCCAGGTTGTTCTCTTGGTCTGTTTGCTTTACATGCTGTTTCATCTCCAGCACAC
AGAAAAGTGTTAGGCGCTCAGCAAGTATTTGTCAAATGGATTTACCACATCCGTTACGTGAAAA
AAGTACAAAACAGTTATGAATTTTATGGTATTATTTGTGTAAAAGGGATTTTTGCCCCCTCTTA
CCTAATCTAGACTGTTGGAATTCAACAGGACAAACAAATAATTTTATCGACAAATCCATCATAA
GGACATAGAGTAGAGGGAGAATCTTTAGATTAAAAGAGACTTAAAAGACATATCAACAACCACA
ATATGTGCATCTTATTTGCATCCTGATTCAAATAAAGTTTTTAAAAAGGCTGACATTTATGAAG
CAATTGGAAATCCGAATACTGCCTGGATGTCTTATGTTATTAAGGAAACATTGCAAATTTTTAC
GTTATGGTTATTGTGTTTTGGAAATGTTTTAAAAGTCTTCATCCTTTAGATATACACAGAGAAA
TATTTACGGATGAAATGCTATGATGTTTGGGAGGGAACAGGTGAGGTGTGGCTAAAACAAGCCT
GTTTTTGTTTTTGTTTTCCTTTTAGGGCCACACCTACACTGCAGCTCACAGCAACAACAGATCA
CTGACCCACTGAGCAGGCCAGGGATGAACCTGCATCCTCATGGATACTAGTCAGATTTGTTTCC
ACTGCGACACGATGGGAACTCACAAAACAGGTCTGTTGAGTTGACACTTCTTGAAGCAAAGAAA
TAGCAACATGAGATTCCACCATAGGATTCCATCTGCTTTGGTATACATTCATCATTTTCCACAG
CAAAAGGTTACAAAGGAGGGAGTTCCCCTTGTGGCTCACCGGGTTATGAACCCAACTAGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_001304011	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	ADU33129	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSSSCP00000011752
	ENSSSCP00000011752.4
	ENSSSCP00005008062.1
	ENSSSCP00015032351.1
	ENSSSCP00035016085.1
	ENSSSCP00040012504.1
	ENSSSCP00045018932.1
	ENSSSCP00060033233.1
	ENSSSCP00065023126.1

RefSeq Acc Id:

NP_001304011 ⟸ NM_001317082

- UniProtKB:

E7BXW8 (UniProtKB/TrEMBL), A0A8D1HJ06 (UniProtKB/TrEMBL), F1RWE3 (UniProtKB/TrEMBL), A0A8D1DW20 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAARGVGLLTRLSLGAQRNQVQRALRRLLSCPGTVAADLRREEQFSGSAETGSEDRIPKKRFSE
VQEERREQAQRTVLIHCPNKISEKKFLQYLSQHGPVNSHFFYESFGLYAVVEFCQKESVASLQS
VTRTPSRGAEAAIPFRSRYFSLKLRNPSSQPSEQSSVQCSNQSSPSSKKLFELLCCAESVDDQL
TALLKTFQLTEENTKLRYLTCSLIEDIAAAYFPGCAVRPFGSSVNSFGKLGCDLDMFLDLDEIG
NFSAQKASGNFLMEFQVKNVPSERIVTQKILSVIGECLDHFGPGCVGVQKILNARCPLVRFSHQ
ASGFQCDLTTNNRIALKVLSCFILYGALDSRVRALVFSIRCWARVHSLTSSIPGAWITNFSLTM
MVIFFLQRRSPPILPTLDSLKSLADAEDKCIIEGHNCTFVRDLNKIKPSGNTESLELLLKEFFE
YFGNFAFNKNSINIRQGGEQNKPESSPLHIQNPFETSLNISKNVSQSQLQKFVELARESAWILH
QEVKERQSSNQPWGLATLLLPSVANNISFVKKRKKPASERIKNLLESIKSSSTEHPTDTNGKRA
VNTQA

hide sequence

RefSeq Acc Id:

ENSSSCP00000054344 ⟸ ENSSSCT00000048465

RefSeq Acc Id:

ENSSSCP00000011752 ⟸ ENSSSCT00000012060

Protein Domains

PAP-associated RL

Additional Information

External Database Links

Database	Acc Id	Source(s)
Ensembl Genes	ENSSSCG00000011018	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
	ENSSSCG00005008934	UniProtKB/TrEMBL
	ENSSSCG00015059841	UniProtKB/TrEMBL
	ENSSSCG00035030335	UniProtKB/TrEMBL
	ENSSSCG00040022292	UniProtKB/TrEMBL
	ENSSSCG00045016112	UniProtKB/TrEMBL
	ENSSSCG00060056450	UniProtKB/TrEMBL
	ENSSSCG00065038907	UniProtKB/TrEMBL
Ensembl Transcript	ENSSSCT00000012060	ENTREZGENE
	ENSSSCT00000012060.5	UniProtKB/TrEMBL
	ENSSSCT00005013607.1	UniProtKB/TrEMBL
	ENSSSCT00015080035.1	UniProtKB/TrEMBL
	ENSSSCT00035040195.1	UniProtKB/TrEMBL
	ENSSSCT00040029902.1	UniProtKB/TrEMBL
	ENSSSCT00045027407.1	UniProtKB/TrEMBL
	ENSSSCT00060076891.1	UniProtKB/TrEMBL
	ENSSSCT00065053191.1	UniProtKB/TrEMBL
Gene3D-CATH	1.10.1410.10	UniProtKB/TrEMBL
	3.30.460.10	UniProtKB/TrEMBL
InterPro	IPR041252	UniProtKB/TrEMBL
	NT_sf	UniProtKB/TrEMBL
	PAP_assoc	UniProtKB/TrEMBL
KEGG Report	ssc:100517235	UniProtKB/TrEMBL
NCBI Gene	MTPAP	ENTREZGENE
PANTHER	POLY A POLYMERASE CID PAP -RELATED	UniProtKB/TrEMBL
	POLY(A) RNA POLYMERASE, MITOCHONDRIAL	UniProtKB/TrEMBL
Pfam	PAP_assoc	UniProtKB/TrEMBL
	PF17797	UniProtKB/TrEMBL
Superfamily-SCOP	PAP/OAS1 substrate-binding domain	UniProtKB/TrEMBL
	SSF81301	UniProtKB/TrEMBL
UniProt	A0A8D1DW20	ENTREZGENE, UniProtKB/TrEMBL
	A0A8D1HJ06	ENTREZGENE, UniProtKB/TrEMBL
	E7BXW8	ENTREZGENE, UniProtKB/TrEMBL
	F1RWE3	ENTREZGENE
UniProt Secondary	F1RWE3	UniProtKB/TrEMBL
VGNC ID	VGNC:96676	ENTREZGENE

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM