CNTNAP3 (contactin associated protein family member 3) - Rat Genome Database

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Gene: CNTNAP3 (contactin associated protein family member 3) Sus scrofa
Analyze
Symbol: CNTNAP3
Name: contactin associated protein family member 3
RGD ID: 13857763
Description: FOUND IN axon (ortholog); perikaryon (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: contactin-associated protein-like 3; LOC102166958
RGD Orthologs
Human
Mouse
Rat
Dog
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1143,295,330 - 3,500,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (ISO)
membrane  (IEA)
perikaryon  (ISO)

References
Additional References at PubMed
PMID:14681463  


Genomics

Comparative Map Data
CNTNAP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1143,295,330 - 3,500,820 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CNTNAP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38939,064,710 - 39,288,167 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl939,064,710 - 39,288,315 (-)EnsemblGRCh38hg38GRCh38
GRCh37939,064,707 - 39,288,164 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36939,062,764 - 39,278,300 (-)NCBINCBI36Build 36hg18NCBI36
Build 34939,062,765 - 39,278,300NCBI
Celera939,407,378 - 39,424,447 (+)NCBICelera
Cytogenetic Map9p12NCBI
HuRef938,813,185 - 39,015,022 (-)NCBIHuRef
CHM1_1940,239,538 - 40,345,164 (+)NCBICHM1_1
T2T-CHM13v2.0939,078,097 - 39,301,583 (-)NCBIT2T-CHM13v2.0
Cntnap3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391364,883,994 - 65,051,845 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1364,883,996 - 65,051,769 (-)EnsemblGRCm39 Ensembl
GRCm381364,737,591 - 64,904,029 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1364,736,182 - 64,903,955 (-)EnsemblGRCm38mm10GRCm38
MGSCv371364,838,899 - 65,005,196 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361364,750,973 - 64,918,679 (-)NCBIMGSCv36mm8
Celera1366,396,028 - 66,549,295 (-)NCBICelera
Cytogenetic Map13B3NCBI
cM Map1333.46NCBI
Cntnap3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr817273,137 - 461,233 (+)NCBIGRCr8
mRatBN7.217267,379 - 455,478 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl17267,508 - 454,102 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx17299,084 - 483,405 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0171,841,652 - 2,025,982 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.017296,497 - 480,814 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0172,197,355 - 2,380,727 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl172,201,924 - 2,278,613 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0172,187,635 - 2,365,479 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4175,740,384 - 5,935,247 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera172,055,037 - 2,241,786 (-)NCBICelera
Cytogenetic Map17p14NCBI
CNTNAP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1194,533,087 - 94,722,824 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha194,980,934 - 95,171,012 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0195,133,165 - 95,323,781 (-)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1194,761,360 - 94,951,580 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0194,485,592 - 94,677,494 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0195,248,970 - 95,439,391 (-)NCBIUU_Cfam_GSD_1.0

Variants

.
Variants in CNTNAP3
6091 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
4 2 23 3 4 3 3 23 2 3 1

Sequence


RefSeq Acc Id: XM_021072822   ⟹   XP_020928481
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1143,295,334 - 3,500,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072823   ⟹   XP_020928482
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1143,295,335 - 3,500,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072824   ⟹   XP_020928483
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1143,295,330 - 3,500,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_021072825   ⟹   XP_020928484
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1143,295,335 - 3,500,820 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020928481 (Get FASTA)   NCBI Sequence Viewer  
  XP_020928482 (Get FASTA)   NCBI Sequence Viewer  
  XP_020928483 (Get FASTA)   NCBI Sequence Viewer  
  XP_020928484 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00015037061.1
  ENSSSCP00015037095.1
  ENSSSCP00015037178.1
RefSeq Acc Id: XP_020928483   ⟸   XM_021072824
- Peptide Label: isoform X3
- UniProtKB: A0A8D0PPT6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928481   ⟸   XM_021072822
- Peptide Label: isoform X1
- UniProtKB: A0A8D0PNV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928482   ⟸   XM_021072823
- Peptide Label: isoform X2
- UniProtKB: A0A8D0PNV3 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_020928484   ⟸   XM_021072825
- Peptide Label: isoform X4
- UniProtKB: A0A8D0PPT6 (UniProtKB/TrEMBL)
- Sequence:
Protein Domains
EGF-like   F5/8 type C   Fibrinogen C-terminal   Laminin G


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00015067626 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00015090598.1 UniProtKB/TrEMBL
  ENSSSCT00015090662.1 UniProtKB/TrEMBL
  ENSSSCT00015090861.1 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.1000 UniProtKB/TrEMBL
  2.60.120.200 UniProtKB/TrEMBL
  Galactose-binding domain-like UniProtKB/TrEMBL
  Laminin UniProtKB/TrEMBL
InterPro ConA-like_dom_sf UniProtKB/TrEMBL
  EGF-like_dom UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  Fibrinogen-like_C UniProtKB/TrEMBL
  Fibrinogen_a/b/g_C_dom UniProtKB/TrEMBL
  Galactose-bd-like_sf UniProtKB/TrEMBL
  Laminin_G UniProtKB/TrEMBL
  Neurexin-related_CASP UniProtKB/TrEMBL
NCBI Gene LOC102166958 ENTREZGENE
PANTHER PIKACHURIN-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR15036:SF36 UniProtKB/TrEMBL
Pfam EGF UniProtKB/TrEMBL
  F5_F8_type_C UniProtKB/TrEMBL
  Laminin_G_2 UniProtKB/TrEMBL
PROSITE EGF_3 UniProtKB/TrEMBL
  FA58C_1 UniProtKB/TrEMBL
  FA58C_2 UniProtKB/TrEMBL
  FA58C_3 UniProtKB/TrEMBL
  FIBRINOGEN_C_2 UniProtKB/TrEMBL
  LAM_G_DOMAIN UniProtKB/TrEMBL
SMART EGF UniProtKB/TrEMBL
  FA58C UniProtKB/TrEMBL
  LamG UniProtKB/TrEMBL
Superfamily-SCOP EGF/Laminin UniProtKB/TrEMBL
  SSF49785 UniProtKB/TrEMBL
  SSF49899 UniProtKB/TrEMBL
  SSF56496 UniProtKB/TrEMBL
UniProt A0A8D0PNV3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8D0PPT6 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-21 CNTNAP3  contactin associated protein family member 3  LOC102166958  contactin-associated protein-like 3  Symbol and/or name change 5135510 APPROVED