TAF2 (TATA-box binding protein associated factor 2) - Rat Genome Database

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Gene: TAF2 (TATA-box binding protein associated factor 2) Sus scrofa
Analyze
Symbol: TAF2
Name: TATA-box binding protein associated factor 2
RGD ID: 13855041
Description: ENCODES a protein that exhibits transcription cis-regulatory region binding (inferred); INVOLVED IN response to organic cyclic compound (ortholog); PARTICIPATES IN RNA polymerase II transcription initiation pathway; ASSOCIATED WITH autosomal recessive intellectual developmental disorder 40 (ortholog); genetic disease (ortholog); hereditary multiple exostoses (ortholog); FOUND IN nucleus (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: transcription initiation factor TFIID subunit 2
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,180,320 - 19,267,071 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,180,215 - 19,267,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,215,503 - 20,284,755 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References
Additional References at PubMed
PMID:30032202  


Genomics

Comparative Map Data
TAF2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl419,180,320 - 19,267,071 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1419,180,215 - 19,267,416 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2420,215,503 - 20,284,755 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TAF2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh388119,730,774 - 119,832,841 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl8119,730,774 - 119,832,863 (-)EnsemblGRCh38hg38GRCh38
GRCh378120,743,014 - 120,845,081 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 368120,812,195 - 120,914,255 (-)NCBINCBI36Build 36hg18NCBI36
Build 348120,812,195 - 120,914,255NCBI
Celera8116,932,070 - 117,034,135 (-)NCBICelera
Cytogenetic Map8q24.12NCBI
HuRef8116,063,646 - 116,165,955 (-)NCBIHuRef
CHM1_18120,783,731 - 120,885,905 (-)NCBICHM1_1
T2T-CHM13v2.08120,859,650 - 120,961,708 (-)NCBIT2T-CHM13v2.0
Taf2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391554,878,525 - 54,935,580 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1554,878,527 - 54,935,548 (-)EnsemblGRCm39 Ensembl
GRCm381555,015,129 - 55,072,187 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1555,015,131 - 55,072,152 (-)EnsemblGRCm38mm10GRCm38
MGSCv371554,846,684 - 54,903,707 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361554,845,212 - 54,902,235 (-)NCBIMGSCv36mm8
Celera1556,554,123 - 56,610,674 (-)NCBICelera
Cytogenetic Map15D1NCBI
cM Map1521.96NCBI
Taf2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8788,312,374 - 88,369,399 (-)NCBIGRCr8
mRatBN7.2786,422,613 - 86,479,616 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl786,422,613 - 86,479,616 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx788,306,193 - 88,362,784 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0790,507,402 - 90,563,993 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0790,312,868 - 90,369,459 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0794,698,987 - 94,755,924 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl794,698,987 - 94,755,924 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0795,339,750 - 95,396,754 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4791,542,400 - 91,599,759 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1791,589,861 - 91,597,921 (-)NCBI
Celera783,216,946 - 83,273,562 (-)NCBICelera
Cytogenetic Map7q32NCBI
Taf2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495541725,457,615 - 25,515,923 (-)NCBIChiLan1.0ChiLan1.0
TAF2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27137,156,881 - 137,259,288 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan18112,668,784 - 112,770,380 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v08116,421,520 - 116,523,138 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.18119,170,327 - 119,271,405 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl8119,170,327 - 119,271,405 (-)Ensemblpanpan1.1panPan2
TAF2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11318,724,408 - 18,824,025 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1318,729,234 - 18,823,979 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1318,732,315 - 18,837,051 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01319,053,514 - 19,153,172 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1319,057,530 - 19,153,414 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11318,780,662 - 18,880,287 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01318,879,633 - 18,979,783 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01319,112,087 - 19,210,511 (-)NCBIUU_Cfam_GSD_1.0
Taf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530319,445,742 - 19,525,705 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647026,871,847 - 26,951,806 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647026,871,865 - 26,951,804 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TAF2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.18114,291,325 - 114,395,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl8114,290,866 - 114,395,537 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603925,892,245 - 25,996,589 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Taf2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476317,806,280 - 17,907,547 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462476317,801,835 - 17,907,538 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in TAF2
2090 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
10 4 23 3 2 5 14 12 23 3 6 3

Sequence


Ensembl Acc Id: ENSSSCT00000033583   ⟹   ENSSSCP00000029633
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl419,180,320 - 19,267,071 (+)Ensembl
Ensembl Acc Id: ENSSSCT00000035390   ⟹   ENSSSCP00000028806
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 Ensembl419,180,280 - 19,278,592 (+)Ensembl
RefSeq Acc Id: XM_021090551   ⟹   XP_020946210
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1419,180,215 - 19,267,416 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_020946210 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000029633
  ENSSSCP00000029633.4
  ENSSSCP00035029914.1
RefSeq Acc Id: XP_020946210   ⟸   XM_021090551
- UniProtKB: A0A8D1AJR2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSSSCP00000028806   ⟸   ENSSSCT00000035390
Ensembl Acc Id: ENSSSCP00000029633   ⟸   ENSSSCT00000033583


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000006000 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSSSCG00035055300 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000033583 ENTREZGENE
  ENSSSCT00000033583.4 UniProtKB/TrEMBL
  ENSSSCT00035073760.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.390.10 UniProtKB/TrEMBL
  2.60.40.1730 UniProtKB/TrEMBL
  Leucine-rich Repeat Variant UniProtKB/TrEMBL
InterPro Aminopeptidase_N-like_N UniProtKB/TrEMBL
  ARM-like UniProtKB/TrEMBL
  ARM-type_fold UniProtKB/TrEMBL
  Peptidase_M4/M1_CTD_sf UniProtKB/TrEMBL
  TAF2 UniProtKB/TrEMBL
NCBI Gene TAF2 ENTREZGENE
PANTHER PTHR15137 UniProtKB/TrEMBL
  TRANSCRIPTION INITIATION FACTOR TFIID SUBUNIT 2 UniProtKB/TrEMBL
Superfamily-SCOP Metalloproteases ('zincins'), catalytic domain UniProtKB/TrEMBL
  SSF48371 UniProtKB/TrEMBL
  SSF63737 UniProtKB/TrEMBL
UniProt A0A8D1AJR2 ENTREZGENE, UniProtKB/TrEMBL
  K7GP24_PIG UniProtKB/TrEMBL
VGNC ID VGNC:93715 ENTREZGENE