USP27X (ubiquitin specific peptidase 27 X-linked) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: USP27X (ubiquitin specific peptidase 27 X-linked) Sus scrofa
Analyze
Symbol: USP27X
Name: ubiquitin specific peptidase 27 X-linked
RGD ID: 13843174
Description: ENCODES a protein that exhibits cysteine-type deubiquitinase activity (inferred); cysteine-type endopeptidase activity (inferred); cysteine-type peptidase activity (inferred); INVOLVED IN defense response to virus (inferred); positive regulation of apoptotic process (inferred); positive regulation of type I interferon-mediated signaling pathway (inferred); ASSOCIATED WITH autistic disorder (ortholog); congenital disorder of glycosylation type IIm (ortholog); genetic disease (ortholog)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: ubiquitin carboxyl-terminal hydrolase 27
RGD Orthologs
Human
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: Sscrofa11.1 - Pig Sscrofa11.1 Assembly
Position:
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,555,005 - 43,556,321 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,553,454 - 43,557,247 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,462,214 - 48,465,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

References
Additional References at PubMed
PMID:22301074  


Genomics

Comparative Map Data
USP27X
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX43,555,005 - 43,556,321 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1X43,553,454 - 43,557,247 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2X48,462,214 - 48,465,981 (-)NCBISscrofa10.2Sscrofa10.2susScr3
USP27X
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X49,879,484 - 49,882,558 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX49,879,484 - 49,882,558 (+)EnsemblGRCh38hg38GRCh38
GRCh37X49,644,087 - 49,647,162 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36X49,530,949 - 49,533,210 (+)NCBINCBI36Build 36hg18NCBI36
CeleraX53,713,777 - 53,716,476 (+)NCBICelera
Cytogenetic MapXp11.23NCBI
HuRefX47,113,635 - 47,116,334 (+)NCBIHuRef
CHM1_1X49,724,245 - 49,726,944 (+)NCBICHM1_1
T2T-CHM13v2.0X49,195,374 - 49,198,448 (+)NCBIT2T-CHM13v2.0
Usp27x
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X7,238,830 - 7,242,069 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX7,237,513 - 7,242,069 (-)EnsemblGRCm39 Ensembl
GRCm38X7,372,591 - 7,375,830 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,371,276 - 7,375,830 (-)EnsemblGRCm38mm10GRCm38
GRCm38.p6 EnsemblX7,371,274 - 7,375,830 (-)EnsemblGRCm38mm10GRCm38
MGSCv37X6,949,717 - 6,952,956 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36X6,528,235 - 6,532,785 (-)NCBIMGSCv36mm8
CeleraX4,096,292 - 4,099,273 (+)NCBICelera
Cytogenetic MapXA1.1NCBI
cM MapX3.31NCBI
Usp27x
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X17,795,506 - 17,798,741 (+)NCBIGRCr8
mRatBN7.2X15,123,620 - 15,126,855 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX15,124,596 - 15,125,912 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_UtxX19,937,954 - 19,941,190 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X20,142,127 - 20,145,363 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X16,407,087 - 16,410,323 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X15,987,964 - 15,991,149 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX15,988,604 - 15,990,484 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0X16,772,644 - 16,775,829 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X27,189,208 - 27,199,805 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX15,204,195 - 15,207,324 (+)NCBICelera
Cytogenetic MapXq12NCBI
Usp27x
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049555431,023,931 - 1,027,048 (+)NCBIChiLan1.0ChiLan1.0
USP27X
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X51,306,617 - 51,310,196 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X51,309,993 - 51,313,493 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X42,093,799 - 42,097,346 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X49,808,212 - 49,811,792 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX49,809,559 - 49,810,875 (+)Ensemblpanpan1.1panPan2
USP27X
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X42,645,534 - 42,648,801 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX17,022,297 - 17,026,773 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0X42,786,958 - 42,790,207 (+)NCBIROS_Cfam_1.0
UMICH_Zoey_3.1X42,769,636 - 42,774,112 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X42,758,487 - 42,761,735 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X42,853,307 - 42,856,556 (+)NCBIUU_Cfam_GSD_1.0
Usp27x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X35,156,310 - 35,159,329 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049367211,396,103 - 1,399,745 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049367211,396,103 - 1,399,718 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
USP27X
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X46,718,329 - 46,728,205 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666086309,144 - 313,397 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Usp27x
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248931,314,670 - 1,329,853 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248931,314,670 - 1,329,823 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in USP27X
24 total Variants

Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
circulatory system
ectoderm
endocrine system
endoderm
hemolymphoid system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 2 23 3 2 4 9 7 23 3 5 3

Sequence


Ensembl Acc Id: ENSSSCT00000013455   ⟹   ENSSSCP00000013095
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1 EnsemblX43,555,005 - 43,556,321 (+)Ensembl
RefSeq Acc Id: XM_003135097   ⟹   XP_003135145
Type: CODING
Position:
Pig AssemblyChrPosition (strand)Source
Sscrofa11.1X43,553,454 - 43,557,247 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs XP_003135145 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSSSCP00000013095.4
  ENSSSCP00005044204.1
RefSeq Acc Id: XP_003135145   ⟸   XM_003135097
- Sequence:
Ensembl Acc Id: ENSSSCP00000013095   ⟸   ENSSSCT00000013455
Protein Domains
USP


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSSSCG00000012305 Ensembl, UniProtKB/TrEMBL
  ENSSSCG00005044109 UniProtKB/TrEMBL
Ensembl Transcript ENSSSCT00000013455.4 UniProtKB/TrEMBL
  ENSSSCT00005070914.1 UniProtKB/TrEMBL
Gene3D-CATH Cysteine proteinases UniProtKB/TrEMBL
InterPro Papain-like_cys_pep_sf UniProtKB/TrEMBL
  Peptidase_C19_UCH UniProtKB/TrEMBL
  Ub_carboxyl-term_hydrolase UniProtKB/TrEMBL
  USP_CS UniProtKB/TrEMBL
  USP_dom UniProtKB/TrEMBL
NCBI Gene USP27X ENTREZGENE
PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE UniProtKB/TrEMBL
  UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 27 UniProtKB/TrEMBL
Pfam UCH UniProtKB/TrEMBL
PROSITE USP_1 UniProtKB/TrEMBL
  USP_2 UniProtKB/TrEMBL
  USP_3 UniProtKB/TrEMBL
Superfamily-SCOP SSF54001 UniProtKB/TrEMBL
UniProt A0A4X1VML5_PIG UniProtKB/TrEMBL
UniProt Secondary F1RW22 UniProtKB/TrEMBL