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Gene: GPATCH1 (G-patch domain containing 1) Pan paniscus

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Symbol:

GPATCH1

Name:

G-patch domain containing 1

RGD ID:

13555182

Description:

ENCODES a protein that exhibits nucleic acid binding (inferred); RNA binding (inferred); INVOLVED IN mRNA processing (inferred); ASSOCIATED WITH acute myeloid leukemia (ortholog); hereditary spastic paraplegia 75 (ortholog); FOUND IN catalytic step 2 spliceosome (inferred); nucleus (inferred)

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

G patch domain-containing protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

Mhudiblu_PPA_v0 - Bonobo Mhudiblu_PPA_v0 Assembly

Position:

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	39,055,200 - 39,103,183 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	41,054,327 - 41,103,978 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	30,004,150 - 30,052,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,749,073 - 38,800,413 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,749,078 - 38,800,166 (+)	Ensembl	panpan1.1		panPan2

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GPATCH1	Bonobo	acute myeloid leukemia		ISO	RGD:1318991	8554872	ClinVar Annotator: match by term: Acute myeloid leukemia	ClinVar	PMID:28492532
GPATCH1	Bonobo	hereditary spastic paraplegia 75		ISO	RGD:1318991	8554872	ClinVar Annotator: match by term: Hereditary spastic paraplegia 75	ClinVar	PMID:28492532

Biological Process

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GPATCH1	Bonobo	mRNA processing	involved_in	IEA	InterPro:IPR011666	150520179		InterPro	GO_REF:0000002

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GPATCH1	Bonobo	catalytic step 2 spliceosome	part_of	IEA	UniProtKB:Q9BRR8\|ensembl:ENSP00000170564	150520179		Ensembl	GO_REF:0000107
GPATCH1	Bonobo	nucleus	located_in	IEA	PANTHER:PTN000332983\|PANTHER:PTN000332986	150520179		TreeGrafter	GO_REF:0000118

Molecular Function

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
GPATCH1	Bonobo	nucleic acid binding	enables	IEA	InterPro:IPR000467	150520179		InterPro	GO_REF:0000002
GPATCH1	Bonobo	RNA binding	enables	IEA	PANTHER:PTN000332983\|PANTHER:PTN000332986	150520179		TreeGrafter	GO_REF:0000118

PMID:22301074	PMID:30032202

GPATCH1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	39,055,200 - 39,103,183 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	41,054,327 - 41,103,978 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	30,004,150 - 30,052,802 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,749,073 - 38,800,413 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,749,078 - 38,800,166 (+)	Ensembl	panpan1.1		panPan2

GPATCH1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	33,081,181 - 33,130,542 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	33,080,899 - 33,130,542 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	19	33,572,087 - 33,621,448 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	38,263,626 - 38,313,158 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	19	38,263,625 - 38,313,158	NCBI
Celera	19	30,265,376 - 30,314,942 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	30,074,090 - 30,123,661 (+)	NCBI		HuRef
CHM1_1	19	33,572,862 - 33,622,386 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	35,599,866 - 35,649,224 (+)	NCBI		T2T-CHM13v2.0

Gpatch1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	34,975,969 - 35,017,865 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	34,975,961 - 35,017,865 (-)	Ensembl		GRCm39 Ensembl
GRCm38	7	35,238,912 - 35,318,748 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,276,536 - 35,318,440 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	7	36,061,563 - 36,103,459 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	7	34,985,304 - 35,027,200 (-)	NCBI		MGSCv36	mm8
Celera	7	30,417,449 - 30,457,710 (-)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.27	NCBI

Gpatch1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,062,539 - 97,111,487 (-)	NCBI		GRCr8
mRatBN7.2	1	87,925,606 - 87,974,544 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	87,925,618 - 87,974,544 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	1	93,331,885 - 93,380,690 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	1	101,797,854 - 101,846,668 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	1	95,090,181 - 95,138,992 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	1	91,529,096 - 91,578,032 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,529,112 - 91,578,048 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	1	92,659,066 - 92,707,992 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	1	87,793,196 - 87,833,003 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
RGSC_v3.1	1	87,871,321 - 87,911,112 (-)	NCBI
Celera	1	82,275,388 - 82,324,013 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

Gpatch1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955574	569,204 - 609,323 (+)	NCBI	ChiLan1.0	ChiLan1.0

GPATCH1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	119,009,605 - 119,052,676 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	119,009,609 - 119,053,140 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,409,808 - 118,452,887 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	119,608,222 - 119,651,412 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	119,608,228 - 119,651,359 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,174,089 - 119,216,907 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	118,794,999 - 118,838,077 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	119,854,102 - 119,897,209 (-)	NCBI		UU_Cfam_GSD_1.0

Gpatch1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,891,724 - 8,941,036 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	2,705,096 - 2,753,880 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	2,704,848 - 2,754,256 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GPATCH1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,895,517 - 42,941,558 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	6	42,895,488 - 42,941,560 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	38,448,999 - 38,488,066 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GPATCH1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Vero_WHO_p1.0	NW_023666073	5,708,076 - 5,755,484 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gpatch1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624832	7,042,790 - 7,079,688 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624832	7,042,401 - 7,079,554 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.


RefSeq Transcripts	XM_034944371	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_034944372	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_055104457	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JARIFH020000020	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSPPAT00000023037 ⟹ ENSPPAP00000005039

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	38,749,078 - 38,800,166 (+)	Ensembl

Ensembl Acc Id:

ENSPPAT00000023059 ⟹ ENSPPAP00000005042

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
PanPan1.1 Ensembl	19	38,749,078 - 38,764,456 (+)	Ensembl

RefSeq Acc Id:

XM_034944371 ⟹ XP_034800262

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	39,055,200 - 39,103,183 (+)	NCBI
NHGRI_mPanPan1	19	41,054,327 - 41,103,978 (+)	NCBI
Mhudiblu_PPA_v0	19	30,004,150 - 30,052,802 (+)	NCBI

RefSeq Acc Id:

XM_055104457 ⟹ XP_054960432

Type:

CODING

Position:

Bonobo Assembly	Chr	Position (strand)	Source
NHGRI_mPanPan1-v2	20	39,055,200 - 39,090,679 (+)	NCBI
NHGRI_mPanPan1	19	41,054,327 - 41,088,643 (+)	NCBI


Protein RefSeqs	XP_034800262	(Get FASTA)	NCBI Sequence Viewer
	XP_054960432	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSPPAP00000005039.1
	ENSPPAP00000005042.1

RefSeq Acc Id:	XP_034800262 ⟸ XM_034944371
- Peptide Label:	isoform X1
- UniProtKB:	A0A2R8ZK56 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSPPAP00000005042 ⟸ ENSPPAT00000023059

Ensembl Acc Id:

ENSPPAP00000005039 ⟸ ENSPPAT00000023037

RefSeq Acc Id:	XP_054960432 ⟸ XM_055104457
- Peptide Label:	isoform X2

Protein Domains

G patch G-patch

Database	Acc Id	Source(s)
Ensembl Genes	ENSPPAG00000020990	Ensembl, UniProtKB/TrEMBL
Ensembl Transcript	ENSPPAT00000023037.1	UniProtKB/TrEMBL
	ENSPPAT00000023059.1	UniProtKB/TrEMBL
InterPro	DUF1604	UniProtKB/TrEMBL
	G_patch_dom	UniProtKB/TrEMBL
NCBI Gene	GPATCH1	ENTREZGENE
PANTHER	G PATCH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	G PATCH DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	DUF1604	UniProtKB/TrEMBL
	G-patch	UniProtKB/TrEMBL
PROSITE	G_PATCH	UniProtKB/TrEMBL
UniProt	A0A2R8ZJB0_PANPA	UniProtKB/TrEMBL
	A0A2R8ZK56	ENTREZGENE, UniProtKB/TrEMBL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable

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