KRT16P1 (keratin 16 pseudogene 1) - Rat Genome Database

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Gene: KRT16P1 (keratin 16 pseudogene 1) Homo sapiens
Analyze
Symbol: KRT16P1
Name: keratin 16 pseudogene 1
RGD ID: 1354100
HGNC Page HGNC:6420
Description: INTERACTS WITH sodium arsenite; triclosan
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FLJ56791; KRT14P; KRT16P
Related Functional Gene: KRT16  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381718,439,908 - 18,442,895 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1718,439,985 - 18,442,734 (+)EnsemblGRCh38hg38GRCh38
GRCh371718,343,222 - 18,346,209 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361718,283,916 - 18,286,933 (+)NCBINCBI36Build 36hg18NCBI36
Cytogenetic Map17p11.2NCBI
HuRef1719,635,046 - 19,635,594 (-)NCBIHuRef
CHM1_11718,352,285 - 18,355,272 (+)NCBICHM1_1
T2T-CHM13v2.01718,386,742 - 18,389,729 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1984
Count of miRNA genes:785
Interacting mature miRNAs:923
Transcripts:ENST00000399124, ENST00000411877, ENST00000577750, ENST00000581027, ENST00000581210, ENST00000584135, ENST00000584962
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
G16019  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map17q12-q21UniSTS
Cytogenetic Map17q21.2UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium 5 13 20 13 22 41 7
Low 47 3 93 119 4 87 228 7 16 13 263 297 36 108
Below cutoff 734 868 607 257 297 166 2100 652 1419 81 639 585 96 343 1317

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000399124
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,439,985 - 18,442,734 (+)Ensembl
RefSeq Acc Id: ENST00000577750
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,442,123 - 18,442,895 (+)Ensembl
RefSeq Acc Id: ENST00000581027
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,432,051 - 18,441,869 (+)Ensembl
RefSeq Acc Id: ENST00000581210
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,439,906 - 18,441,020 (+)Ensembl
RefSeq Acc Id: ENST00000584135
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,439,908 - 18,441,299 (+)Ensembl
RefSeq Acc Id: ENST00000584962
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1718,439,905 - 18,442,892 (+)Ensembl
RefSeq Acc Id: NR_073414
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381718,439,908 - 18,442,895 (+)NCBI
CHM1_11718,352,285 - 18,355,272 (+)NCBI
T2T-CHM13v2.01718,386,742 - 18,389,729 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein BAG63152 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC KRT16P1 COSMIC
Ensembl Genes ENSG00000214856 Ensembl
GTEx ENSG00000214856 GTEx
HGNC ID HGNC:6420 ENTREZGENE
Human Proteome Map KRT16P1 Human Proteome Map
NCBI Gene 729252 ENTREZGENE
PharmGKB PA30207 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 KRT16P1  keratin 16 pseudogene 1  KRT14P  keratin 14 pseudogene  Symbol and/or name change 5135510 APPROVED