KRT8P3 (keratin 8 pseudogene 3) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: KRT8P3 (keratin 8 pseudogene 3) Homo sapiens
Analyze
Symbol: KRT8P3
Name: keratin 8 pseudogene 3
RGD ID: 1353644
HGNC Page HGNC:31056
Description: INTERACTS WITH aristolochic acid A; benzo[a]pyrene; okadaic acid
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Related Functional Gene: KRT8  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38861,578,144 - 61,579,905 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl861,578,220 - 61,579,668 (+)EnsemblGRCh38hg38GRCh38
GRCh37862,490,703 - 62,492,464 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36862,653,256 - 62,655,044 (+)NCBINCBI36Build 36hg18NCBI36
Celera858,480,900 - 58,482,671 (+)NCBICelera
Cytogenetic Map8q12.3NCBI
HuRef857,979,657 - 57,981,428 (+)NCBIHuRef
CHM1_1862,542,654 - 62,544,425 (+)NCBICHM1_1
T2T-CHM13v2.0862,001,887 - 62,003,648 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model



  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
KRT8P3Humanaristolochic acid A increases expressionEXP 6480464aristolochic acid I results in increased expression of KRT8P3 mRNACTDPMID:33212167
KRT8P3Humanbenzo[a]pyrene increases expressionEXP 6480464Benzo(a)pyrene results in increased expression of KRT8P3 mRNACTDPMID:32234424
KRT8P3Humanokadaic acid increases expressionEXP 6480464Okadaic Acid results in increased expression of KRT8P3 mRNACTDPMID:38832940

PMID:7821789   PMID:11181995   PMID:30809309  



.

Predicted Target Of
Summary Value
Count of predictions:697
Count of miRNA genes:311
Interacting mature miRNAs:330
Transcripts:ENST00000394813, ENST00000519669
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1300005BP49_HBlood pressure QTL 49 (human)2.240.00066Blood pressuresystolic85317742079177420Human
2289597BW470_HBody weight QTL 470 (human)1.3Body weightBMI83977088765770887Human




adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
1112 2388 2023 1967 3585 1663 2272 4 575 1076 417 2030 5596 5227 17 2388 807 1594 1588 170



Ensembl Acc Id: ENST00000519669
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl861,578,220 - 61,579,668 (+)Ensembl
GenBank Protein BAA05812 (Get FASTA)   NCBI Sequence Viewer  
  EAW86850 (Get FASTA)   NCBI Sequence Viewer  
  EAW86851 (Get FASTA)   NCBI Sequence Viewer  



Database
Acc Id
Source(s)
COSMIC KRT8P3 COSMIC
Ensembl Genes ENSG00000254285 Ensembl, ENTREZGENE
GTEx ENSG00000254285 GTEx
HGNC ID HGNC:31056 ENTREZGENE
Human Proteome Map KRT8P3 Human Proteome Map
NCBI Gene KRT8P3 ENTREZGENE