OR5F2P (olfactory receptor family 5 subfamily F member 2 pseudogene) - Rat Genome Database

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Gene: OR5F2P (olfactory receptor family 5 subfamily F member 2 pseudogene) Homo sapiens
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Symbol: OR5F2P
Name: olfactory receptor family 5 subfamily F member 2 pseudogene
RGD ID: 1353182
HGNC Page HGNC:15286
Description: Olfactory receptors interact with odorant molecules in the nose, to initiate a neuronal response that triggers the perception of a smell. The olfactory receptor proteins are members of a large family of G-protein-coupled receptors (GPCR) arising from single coding-exon genes. Olfactory receptors share a 7-transmembrane domain structure with many neurotransmitter and hormone receptors and are responsible for the recognition and G protein-mediated transduction of odorant signals. The olfactory receptor gene family is the largest in the genome. The nomenclature assigned to the olfactory receptor genes and proteins for this organism is independent of other organisms. [provided by RefSeq, Jul 2008]
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: INFERRED
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381156,015,016 - 56,015,956 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1156,015,017 - 56,015,957 (-)EnsemblGRCh38hg38GRCh38
GRCh371155,782,492 - 55,783,432 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361155,538,969 - 55,540,109 (-)NCBINCBI36Build 36hg18NCBI36
Celera1153,122,657 - 53,123,597 (-)NCBICelera
Cytogenetic Map11q12.1NCBI
HuRef1152,111,480 - 52,112,420 (-)NCBIHuRef
CHM1_11155,648,028 - 55,648,968 (-)NCBICHM1_1
T2T-CHM13v2.01155,953,350 - 55,954,290 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:14983052  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:147
Count of miRNA genes:94
Interacting mature miRNAs:95
Transcripts:ENST00000331916, ENST00000532761
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system adipose tissue appendage
High
Medium
Low 1 2 1
Below cutoff 26 18 8 2 33 2 23 25 18 4 67 9 1 14

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_004193 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC068339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546631 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546632 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546633 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546634 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF546643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC101240 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK004579 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BK004766 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068267 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENST00000532761
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1156,015,017 - 56,015,957 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC OR5F2P COSMIC
Ensembl Genes ENSG00000182365 Ensembl, ENTREZGENE
GTEx ENSG00000182365 GTEx
HGNC ID HGNC:15286 ENTREZGENE
Human Proteome Map OR5F2P Human Proteome Map
NCBI Gene 81194 ENTREZGENE
PharmGKB PA32527 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-12-15 OR5F2P  olfactory receptor family 5 subfamily F member 2 pseudogene  OR5F2P  olfactory receptor, family 5, subfamily F, member 2 pseudogene  Symbol and/or name change 5135510 APPROVED