ZFP1 (ZFP1 zinc finger protein) - Rat Genome Database

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Gene: ZFP1 (ZFP1 zinc finger protein) Homo sapiens
Analyze
Symbol: ZFP1
Name: ZFP1 zinc finger protein
RGD ID: 1351790
HGNC Page HGNC:23328
Description: Enables sequence-specific double-stranded DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to be active in nucleus.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: FLJ34243; zfp-1; zinc finger protein 1 homolog; zinc finger protein 475; ZNF475
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,119,002 - 75,172,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,148,494 - 75,172,236 (+)EnsemblGRCh38hg38GRCh38
GRCh371675,182,422 - 75,206,132 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,739,922 - 73,763,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 341673,739,925 - 73,763,486NCBI
Celera1659,475,364 - 59,499,098 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,933,122 - 60,956,836 (+)NCBIHuRef
CHM1_11676,594,604 - 76,618,256 (+)NCBICHM1_1
T2T-CHM13v2.01681,165,700 - 81,218,965 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA,IEA)

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2574853   PMID:12477932   PMID:14702039   PMID:15342556   PMID:15489334   PMID:16344560   PMID:19844255   PMID:20360068   PMID:20562864   PMID:21540836   PMID:21873635   PMID:25086665  
PMID:26186194   PMID:26496610   PMID:28473536   PMID:28514442   PMID:30021884   PMID:31753913   PMID:32296183   PMID:33961781   PMID:34079125   PMID:34672954   PMID:35271311   PMID:35563538  
PMID:36089195   PMID:37372979   PMID:37827155   PMID:39261568  


Genomics

Comparative Map Data
ZFP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381675,119,002 - 75,172,234 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1675,148,494 - 75,172,236 (+)EnsemblGRCh38hg38GRCh38
GRCh371675,182,422 - 75,206,132 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361673,739,922 - 73,763,633 (+)NCBINCBI36Build 36hg18NCBI36
Build 341673,739,925 - 73,763,486NCBI
Celera1659,475,364 - 59,499,098 (+)NCBICelera
Cytogenetic Map16q23.1NCBI
HuRef1660,933,122 - 60,956,836 (+)NCBIHuRef
CHM1_11676,594,604 - 76,618,256 (+)NCBICHM1_1
T2T-CHM13v2.01681,165,700 - 81,218,965 (+)NCBIT2T-CHM13v2.0
Zfp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398112,366,606 - 112,397,740 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8112,370,033 - 112,397,643 (+)EnsemblGRCm39 Ensembl
GRCm388111,643,443 - 111,671,108 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8111,643,401 - 111,671,011 (+)EnsemblGRCm38mm10GRCm38
MGSCv378114,167,343 - 114,194,911 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368114,530,116 - 114,557,684 (+)NCBIMGSCv36mm8
Celera8115,871,013 - 115,898,936 (+)NCBICelera
Cytogenetic Map8E1NCBI
cM Map857.98NCBI
Zfp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81956,508,828 - 56,542,109 (+)NCBIGRCr8
mRatBN7.21939,599,497 - 39,633,490 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1939,599,954 - 39,632,995 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1946,399,286 - 46,431,714 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01947,052,614 - 47,085,039 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01949,357,102 - 49,389,996 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01943,852,707 - 43,886,907 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1943,882,249 - 43,885,837 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01954,660,333 - 54,694,879 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41941,578,221 - 41,591,204 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1938,977,483 - 39,011,456 (+)NCBICelera
Cytogenetic Map19q12NCBI
Zfp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554842,421,119 - 2,437,127 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554842,419,119 - 2,444,345 (-)NCBIChiLan1.0ChiLan1.0
ZFP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21884,865,880 - 84,890,131 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11690,787,818 - 90,812,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01655,717,256 - 55,741,496 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11675,068,184 - 75,091,710 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1675,068,184 - 75,091,710 (+)Ensemblpanpan1.1panPan2
ZFP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1575,542,012 - 75,568,948 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl575,543,677 - 75,568,845 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha575,518,367 - 75,545,367 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0575,898,296 - 75,925,298 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl575,898,301 - 75,925,288 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1575,802,709 - 75,829,735 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0575,625,440 - 75,652,460 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0576,117,069 - 76,143,961 (-)NCBIUU_Cfam_GSD_1.0
Zfp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934935,635,625 - 35,659,959 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647523,935,594 - 23,953,465 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647523,935,588 - 23,953,489 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl612,480,278 - 12,531,530 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1612,480,298 - 12,549,476 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2612,297,108 - 12,364,225 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1560,623,681 - 60,648,779 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604715,408,411 - 15,437,918 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474611,792,354 - 11,841,460 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in ZFP1
35 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 16q22.1-24.3(chr16:70514631-90081985)x3 copy number gain See cases [RCV000052422] Chr16:70514631..90081985 [GRCh38]
Chr16:70548534..90148393 [GRCh37]
Chr16:69106035..88675894 [NCBI36]
Chr16:16q22.1-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65313395-90081985)x3 copy number gain See cases [RCV000052421] Chr16:65313395..90081985 [GRCh38]
Chr16:65347298..90148393 [GRCh37]
Chr16:63904799..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q22.1-23.1(chr16:69918076-76723348)x1 copy number loss See cases [RCV000053356] Chr16:69918076..76723348 [GRCh38]
Chr16:69951979..76757245 [GRCh37]
Chr16:68509480..75314746 [NCBI36]
Chr16:16q22.1-23.1		 pathogenic
GRCh38/hg38 16q22.3-23.3(chr16:73049467-82576326)x1 copy number loss See cases [RCV000053357] Chr16:73049467..82576326 [GRCh38]
Chr16:73083366..82609931 [GRCh37]
Chr16:71640867..81167432 [NCBI36]
Chr16:16q22.3-23.3		 pathogenic
GRCh38/hg38 16q23.1(chr16:75163906-78064640)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053358]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053358]|See cases [RCV000053358] Chr16:75163906..78064640 [GRCh38]
Chr16:75197804..78098537 [GRCh37]
Chr16:73755305..76656038 [NCBI36]
Chr16:16q23.1		 pathogenic
GRCh38/hg38 16q22.3-23.1(chr16:73917167-75319927)x3 copy number gain See cases [RCV000053868] Chr16:73917167..75319927 [GRCh38]
Chr16:73951066..75353825 [GRCh37]
Chr16:72508567..73911326 [NCBI36]
Chr16:16q22.3-23.1		 uncertain significance
GRCh38/hg38 16q23.1(chr16:74658508-75378014)x3 copy number gain See cases [RCV000053893] Chr16:74658508..75378014 [GRCh38]
Chr16:74692406..75411912 [GRCh37]
Chr16:73249907..73969413 [NCBI36]
Chr16:16q23.1		 uncertain significance
NM_153688.2(ZFP1):c.217C>T (p.Leu73Phe) single nucleotide variant Malignant melanoma [RCV000071228] Chr16:75169327 [GRCh38]
Chr16:75203225 [GRCh37]
Chr16:73760726 [NCBI36]
Chr16:16q23.1		 not provided
GRCh38/hg38 16q22.1-24.1(chr16:70414573-84908120)x1 copy number loss See cases [RCV000133814] Chr16:70414573..84908120 [GRCh38]
Chr16:70448476..84941726 [GRCh37]
Chr16:69005977..83499227 [NCBI36]
Chr16:16q22.1-24.1		 pathogenic
GRCh38/hg38 16q23.1(chr16:74881191-75310294)x1 copy number loss See cases [RCV000135363] Chr16:74881191..75310294 [GRCh38]
Chr16:74915089..75344192 [GRCh37]
Chr16:73472590..73901693 [NCBI36]
Chr16:16q23.1		 uncertain significance
GRCh38/hg38 16q21-24.1(chr16:62925929-84585795)x3 copy number gain See cases [RCV000135863] Chr16:62925929..84585795 [GRCh38]
Chr16:62959833..84619401 [GRCh37]
Chr16:61517334..83176902 [NCBI36]
Chr16:16q21-24.1		 pathogenic
GRCh38/hg38 16q22.1-24.3(chr16:70749398-90096995)x3 copy number gain See cases [RCV000137495] Chr16:70749398..90096995 [GRCh38]
Chr16:70783301..90163403 [GRCh37]
Chr16:69340802..88690904 [NCBI36]
Chr16:16q22.1-24.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:65511483-90096995)x3 copy number gain See cases [RCV000139426] Chr16:65511483..90096995 [GRCh38]
Chr16:65545386..90163403 [GRCh37]
Chr16:64102887..88690904 [NCBI36]
Chr16:16q21-24.3		 pathogenic
GRCh38/hg38 16q23.1(chr16:74811982-75698467)x3 copy number gain See cases [RCV000139130] Chr16:74811982..75698467 [GRCh38]
Chr16:74845880..75732365 [GRCh37]
Chr16:73403381..74289866 [NCBI36]
Chr16:16q23.1		 uncertain significance
GRCh38/hg38 16q23.1(chr16:74688486-75377736)x3 copy number gain See cases [RCV000141922] Chr16:74688486..75377736 [GRCh38]
Chr16:74722384..75411634 [GRCh37]
Chr16:73279885..73969135 [NCBI36]
Chr16:16q23.1		 uncertain significance
GRCh38/hg38 16q22.1-23.3(chr16:69053457-83274681)x3 copy number gain See cases [RCV000142038] Chr16:69053457..83274681 [GRCh38]
Chr16:69087360..83308286 [GRCh37]
Chr16:67644861..81865787 [NCBI36]
Chr16:16q22.1-23.3		 pathogenic
GRCh38/hg38 16q21-24.3(chr16:64389378-90081985)x3 copy number gain See cases [RCV000142578] Chr16:64389378..90081985 [GRCh38]
Chr16:64423281..90148393 [GRCh37]
Chr16:62980782..88675894 [NCBI36]
Chr16:16q21-24.3		 pathogenic|likely pathogenic
GRCh38/hg38 16q12.2-24.3(chr16:52899183-90088654)x3 copy number gain See cases [RCV000143425] Chr16:52899183..90088654 [GRCh38]
Chr16:52933095..90155062 [GRCh37]
Chr16:51490596..88682563 [NCBI36]
Chr16:16q12.2-24.3		 pathogenic
GRCh38/hg38 16q21-23.3(chr16:65957829-83611443)x3 copy number gain See cases [RCV000143742] Chr16:65957829..83611443 [GRCh38]
Chr16:65991732..83645048 [GRCh37]
Chr16:64549233..82202549 [NCBI36]
Chr16:16q21-23.3		 pathogenic
GRCh37/hg19 16q23.1-24.3(chr16:74872514-90274440)x3 copy number gain See cases [RCV000240108] Chr16:74872514..90274440 [GRCh37]
Chr16:16q23.1-24.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46615804-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207138] Chr16:46615804..90142285 [GRCh37]
Chr16:16q11.2-24.3		 uncertain significance
GRCh37/hg19 16q22.2-24.3(chr16:72107834-90142285)x1 copy number loss Breast ductal adenocarcinoma [RCV000207182] Chr16:72107834..90142285 [GRCh37]
Chr16:16q22.2-24.3		 uncertain significance
Single allele complex Breast ductal adenocarcinoma [RCV000207314] Chr16:56368689..90141355 [GRCh37]
Chr16:16q12.2-24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46464488-90155062)x3 copy number gain See cases [RCV000446110] Chr16:46464488..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:69193-90274381)x3 copy number gain See cases [RCV000446684] Chr16:69193..90274381 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q23.1(chr16:74150909-77077326)x1 copy number loss See cases [RCV000512133] Chr16:74150909..77077326 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16p13.2-q24.3(chr16:9273328-89548493)x3 copy number gain See cases [RCV000511622] Chr16:9273328..89548493 [GRCh37]
Chr16:16p13.2-q24.3		 uncertain significance
GRCh37/hg19 16q11.2-24.3(chr16:46455960-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626435] Chr16:46455960..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062)x3 copy number gain See cases [RCV000512138] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:85881-90155062) copy number gain See cases [RCV000511296] Chr16:85881..90155062 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46497599-90354753)x1 copy number loss Poly (ADP-Ribose) polymerase inhibitor response [RCV000626429] Chr16:46497599..90354753 [GRCh37]
Chr16:16q11.2-24.3		 drug response
NM_153688.4(ZFP1):c.352G>C (p.Asp118His) single nucleotide variant not specified [RCV004329160] Chr16:75169462 [GRCh38]
Chr16:75203360 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q13-24.3(chr16:57051473-89797669)x3 copy number gain See cases [RCV000512511] Chr16:57051473..89797669 [GRCh37]
Chr16:16q13-24.3		 pathogenic
GRCh37/hg19 16q23.1(chr16:75040327-75237490)x1 copy number loss not provided [RCV000683833] Chr16:75040327..75237490 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.2-24.3(chr16:72515938-90155062)x3 copy number gain not provided [RCV000683831] Chr16:72515938..90155062 [GRCh37]
Chr16:16q22.2-24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90274695)x3 copy number gain not provided [RCV000738918] Chr16:88165..90274695 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:61451-90294632)x3 copy number gain not provided [RCV000738915] Chr16:61451..90294632 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16p13.3-q24.3(chr16:88165-90163275)x3 copy number gain not provided [RCV000738917] Chr16:88165..90163275 [GRCh37]
Chr16:16p13.3-q24.3		 pathogenic
GRCh37/hg19 16q23.1(chr16:74999819-75248871)x4 copy number gain not provided [RCV001006807] Chr16:74999819..75248871 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q23.1(chr16:74356233-75432089)x1 copy number loss not provided [RCV001006805] Chr16:74356233..75432089 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.2-23.1(chr16:72677179-77439111)x1 copy number loss not provided [RCV000847084] Chr16:72677179..77439111 [GRCh37]
Chr16:16q22.2-23.1		 uncertain significance
NM_153688.4(ZFP1):c.467C>T (p.Ser156Phe) single nucleotide variant not specified [RCV004318641] Chr16:75169577 [GRCh38]
Chr16:75203475 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q21-24.3(chr16:61524229-90155062)x3 copy number gain not provided [RCV001249359] Chr16:61524229..90155062 [GRCh37]
Chr16:16q21-24.3		 not provided
GRCh37/hg19 16q23.1(chr16:75064591-75549654)x1 copy number loss not provided [RCV001258649] Chr16:75064591..75549654 [GRCh37]
Chr16:16q23.1		 uncertain significance
NC_000016.9:g.(?_74748068)_(75513746_?)del deletion Macular corneal dystrophy [RCV001949688] Chr16:74748068..75513746 [GRCh37]
Chr16:16q23.1		 pathogenic
GRCh37/hg19 16q11.2-24.3(chr16:46503968-90155062)x3 copy number gain not provided [RCV002221458] Chr16:46503968..90155062 [GRCh37]
Chr16:16q11.2-24.3		 pathogenic
NC_000016.9:g.(?_74485954)_(75339100_?)dup duplication Spastic paraplegia [RCV003122645] Chr16:74485954..75339100 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.2-24.3(chr16:71641395-90161959)x3 copy number gain Syndromic anorectal malformation [RCV002286607] Chr16:71641395..90161959 [GRCh37]
Chr16:16q22.2-24.3		 likely pathogenic
GRCh37/hg19 16q23.1(chr16:75164013-75256868)x1 copy number loss not provided [RCV002472465] Chr16:75164013..75256868 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.3-23.1(chr16:73673334-76105189)x4 copy number gain not provided [RCV002475008] Chr16:73673334..76105189 [GRCh37]
Chr16:16q22.3-23.1		 uncertain significance
GRCh37/hg19 16q22.3-23.1(chr16:73858079-75855162)x1 copy number loss not provided [RCV002475848] Chr16:73858079..75855162 [GRCh37]
Chr16:16q22.3-23.1		 uncertain significance
NM_153688.4(ZFP1):c.224A>G (p.Asn75Ser) single nucleotide variant not specified [RCV004144027] Chr16:75169334 [GRCh38]
Chr16:75203232 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.3-23.1(chr16:73673334-78137887)x1 copy number loss not provided [RCV002475774] Chr16:73673334..78137887 [GRCh37]
Chr16:16q22.3-23.1		 uncertain significance
NM_153688.4(ZFP1):c.395A>G (p.Asp132Gly) single nucleotide variant not specified [RCV004107117] Chr16:75169505 [GRCh38]
Chr16:75203403 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.1210G>A (p.Gly404Arg) single nucleotide variant not specified [RCV004216010] Chr16:75170320 [GRCh38]
Chr16:75204218 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.302A>G (p.Gln101Arg) single nucleotide variant not specified [RCV004234055] Chr16:75169412 [GRCh38]
Chr16:75203310 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.479A>G (p.Lys160Arg) single nucleotide variant not specified [RCV004229061] Chr16:75169589 [GRCh38]
Chr16:75203487 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.371G>T (p.Arg124Ile) single nucleotide variant not specified [RCV004273175] Chr16:75169481 [GRCh38]
Chr16:75203379 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.83C>G (p.Ser28Cys) single nucleotide variant not specified [RCV004255022] Chr16:75166837 [GRCh38]
Chr16:75200735 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.1190T>G (p.Val397Gly) single nucleotide variant not specified [RCV004259285] Chr16:75170300 [GRCh38]
Chr16:75204198 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.163C>A (p.Gln55Lys) single nucleotide variant not specified [RCV004275711] Chr16:75169273 [GRCh38]
Chr16:75203171 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.47A>G (p.Asp16Gly) single nucleotide variant not specified [RCV004258414] Chr16:75166801 [GRCh38]
Chr16:75200699 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.340A>G (p.Lys114Glu) single nucleotide variant not specified [RCV004274671] Chr16:75169450 [GRCh38]
Chr16:75203348 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.1034C>T (p.Thr345Ile) single nucleotide variant not specified [RCV004283047] Chr16:75170144 [GRCh38]
Chr16:75204042 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.514T>G (p.Phe172Val) single nucleotide variant not specified [RCV004327173] Chr16:75169624 [GRCh38]
Chr16:75203522 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.144A>C (p.Glu48Asp) single nucleotide variant not specified [RCV004365331] Chr16:75169254 [GRCh38]
Chr16:75203152 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.449A>G (p.His150Arg) single nucleotide variant not specified [RCV004356562] Chr16:75169559 [GRCh38]
Chr16:75203457 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.1-23.2(chr16:70607067-81561138)x3 copy number gain not provided [RCV003485121] Chr16:70607067..81561138 [GRCh37]
Chr16:16q22.1-23.2		 pathogenic
NM_153688.4(ZFP1):c.67G>C (p.Glu23Gln) single nucleotide variant not provided [RCV003411424] Chr16:75166821 [GRCh38]
Chr16:75200719 [GRCh37]
Chr16:16q23.1		 likely benign
NM_153688.4(ZFP1):c.6C>T (p.Asn2=) single nucleotide variant not provided [RCV003426844] Chr16:75152957 [GRCh38]
Chr16:75186855 [GRCh37]
Chr16:16q23.1		 likely benign
NM_153688.4(ZFP1):c.329A>G (p.Glu110Gly) single nucleotide variant not specified [RCV004485981] Chr16:75169439 [GRCh38]
Chr16:75203337 [GRCh37]
Chr16:16q23.1		 uncertain significance
GRCh37/hg19 16q22.3-23.1(chr16:74079694-75352818)x1 copy number loss not specified [RCV003987133] Chr16:74079694..75352818 [GRCh37]
Chr16:16q22.3-23.1		 pathogenic
NM_153688.4(ZFP1):c.968G>A (p.Arg323His) single nucleotide variant not specified [RCV004686455] Chr16:75170078 [GRCh38]
Chr16:75203976 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.1064C>A (p.Thr355Asn) single nucleotide variant not specified [RCV004686457] Chr16:75170174 [GRCh38]
Chr16:75204072 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.980G>A (p.Ser327Asn) single nucleotide variant not specified [RCV004686458] Chr16:75170090 [GRCh38]
Chr16:75203988 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.511A>G (p.Ile171Val) single nucleotide variant not specified [RCV004686459] Chr16:75169621 [GRCh38]
Chr16:75203519 [GRCh37]
Chr16:16q23.1		 uncertain significance
NM_153688.4(ZFP1):c.763C>T (p.Leu255Phe) single nucleotide variant not specified [RCV004686456] Chr16:75169873 [GRCh38]
Chr16:75203771 [GRCh37]
Chr16:16q23.1		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:3515
Count of miRNA genes:886
Interacting mature miRNAs:1051
Transcripts:ENST00000332307, ENST00000393430, ENST00000464850, ENST00000563356, ENST00000564989, ENST00000566105, ENST00000567481, ENST00000568079, ENST00000570010
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407080193GWAS729169_Hbody height QTL GWAS729169 (human)1e-16body height (VT:0001253)body height (CMO:0000106)167517042775170428Human
407408525GWAS1057501_HPremature atrial contractions QTL GWAS1057501 (human)0.000004Premature atrial contractions167514442175144422Human
407137281GWAS786257_Hlymphocyte count QTL GWAS786257 (human)4e-13lymphocyte countblood lymphocyte count (CMO:0000031)167517054575170546Human
407408526GWAS1057502_HPremature atrial contractions QTL GWAS1057502 (human)0.000005Premature atrial contractions167514577975145780Human
407135299GWAS784275_Hlymphocyte count QTL GWAS784275 (human)4e-15lymphocyte countblood lymphocyte count (CMO:0000031)167517131575171316Human
406945096GWAS594072_Hpregnancy disorder QTL GWAS594072 (human)0.000001pregnancy disorder167514761775147618Human
407138766GWAS787742_Hhigh density lipoprotein cholesterol measurement QTL GWAS787742 (human)1e-08high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)167516186775161868Human
407017096GWAS666072_Hbody height QTL GWAS666072 (human)2e-12body height (VT:0001253)body height (CMO:0000106)167516736475167365Human
407140814GWAS789790_Hhigh density lipoprotein cholesterol measurement QTL GWAS789790 (human)4e-10high density lipoprotein cholesterol measurementblood high density lipoprotein cholesterol level (CMO:0000052)167517131575171316Human
407095048GWAS744024_Hmetabolite measurement QTL GWAS744024 (human)1e-10metabolite measurement167513917875139179Human
407126293GWAS775269_HCrohn's disease QTL GWAS775269 (human)0.000009Crohn's disease167513368175133682Human
407081241GWAS730217_Hlymphocyte count QTL GWAS730217 (human)2e-08lymphocyte countblood lymphocyte count (CMO:0000031)167517054575170546Human
407134563GWAS783539_HPremature atrial contractions QTL GWAS783539 (human)0.000009Premature atrial contractions167515820075158201Human
407328175GWAS977151_HPremature atrial contractions QTL GWAS977151 (human)0.000007Premature atrial contractions167513069075130691Human
407328174GWAS977150_HPremature atrial contractions QTL GWAS977150 (human)0.000005Premature atrial contractions167512947375129474Human
407328173GWAS977149_HPremature atrial contractions QTL GWAS977149 (human)0.000006Premature atrial contractions167512938475129385Human
407328172GWAS977148_HPremature atrial contractions QTL GWAS977148 (human)0.000006Premature atrial contractions167512908475129085Human
407283626GWAS932602_Hbody height QTL GWAS932602 (human)6e-162body height (VT:0001253)body height (CMO:0000106)167515186675151867Human
407283627GWAS932603_Hbody height QTL GWAS932603 (human)3e-09body height (VT:0001253)body height (CMO:0000106)167517186675171867Human
407385465GWAS1034441_Heosinophil percentage of leukocytes QTL GWAS1034441 (human)2e-10eosinophil percentage of leukocytesblood eosinophil count to total leukocyte count ratio (CMO:0000369)167514819175148192Human
407043126GWAS692102_Hlymphocyte count QTL GWAS692102 (human)4e-16lymphocyte countblood lymphocyte count (CMO:0000031)167515186675151867Human
407328177GWAS977153_HPremature atrial contractions QTL GWAS977153 (human)0.000005Premature atrial contractions167514343175143432Human
407328176GWAS977152_HPremature atrial contractions QTL GWAS977152 (human)0.000007Premature atrial contractions167514135775141358Human
407178814GWAS827790_Hbrain connectivity measurement QTL GWAS827790 (human)0.000005brain connectivity measurement167514768175147682Human
406964538GWAS613514_HBMI-adjusted waist circumference QTL GWAS613514 (human)2e-11BMI-adjusted waist circumference167517131575171316Human
406943357GWAS592333_Hprotein measurement QTL GWAS592333 (human)4e-129protein measurement167516596675165967Human
407356858GWAS1005834_HBMI-adjusted waist circumference QTL GWAS1005834 (human)2e-09BMI-adjusted waist circumference167513940075139401Human

Markers in Region
RH102867  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371675,205,566 - 75,205,736UniSTSGRCh37
Build 361673,763,067 - 73,763,237RGDNCBI36
Celera1659,498,532 - 59,498,702RGD
Cytogenetic Map16q23.1UniSTS
HuRef1660,956,270 - 60,956,440UniSTS
GeneMap99-GB4 RH Map16446.95UniSTS
SHGC-57025  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371675,205,569 - 75,205,875UniSTSGRCh37
Build 361673,763,070 - 73,763,376RGDNCBI36
Celera1659,498,535 - 59,498,841RGD
Cytogenetic Map16q23.1UniSTS
HuRef1660,956,273 - 60,956,579UniSTS
TNG Radiation Hybrid Map1633873.0UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 174 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001318469 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318472 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318473 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318474 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318475 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001318476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_153688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011522921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022984 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022985 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022986 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017022987 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_024450168 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433668 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433669 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047433670 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379708 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379710 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054379711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC009078 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC099508 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK091562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK094761 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK291372 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK296560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK308134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL038510 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL038511 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL538214 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC033774 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC064604 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC113863 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC114471 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BP219674 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX647144 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471114 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068262 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA781502 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB075594 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC371394 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC388176 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DC402593 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  KT584964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000332307   ⟹   ENSP00000333192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,534 - 75,170,517 (+)Ensembl
Ensembl Acc Id: ENST00000393430   ⟹   ENSP00000377080
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,582 - 75,172,236 (+)Ensembl
Ensembl Acc Id: ENST00000464850   ⟹   ENSP00000457941
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,527 - 75,172,000 (+)Ensembl
Ensembl Acc Id: ENST00000563356
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,494 - 75,169,402 (+)Ensembl
Ensembl Acc Id: ENST00000564989
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,510 - 75,149,008 (+)Ensembl
Ensembl Acc Id: ENST00000566105
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,494 - 75,149,012 (+)Ensembl
Ensembl Acc Id: ENST00000567481   ⟹   ENSP00000455627
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,149,051 - 75,169,326 (+)Ensembl
Ensembl Acc Id: ENST00000568079   ⟹   ENSP00000454286
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,494 - 75,170,470 (+)Ensembl
Ensembl Acc Id: ENST00000570010   ⟹   ENSP00000457044
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1675,148,524 - 75,172,234 (+)Ensembl
RefSeq Acc Id: NM_001318469   ⟹   NP_001305398
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318471   ⟹   NP_001305400
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318472   ⟹   NP_001305401
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318473   ⟹   NP_001305402
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318474   ⟹   NP_001305403
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318475   ⟹   NP_001305404
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,149,051 - 75,172,234 (+)NCBI
CHM1_11676,595,132 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,776 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001318476   ⟹   NP_001305405
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: NM_153688   ⟹   NP_710155
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
GRCh371675,182,392 - 75,206,132 (+)NCBI
Build 361673,739,922 - 73,763,633 (+)NCBI Archive
Celera1659,475,364 - 59,499,098 (+)RGD
HuRef1660,933,122 - 60,956,836 (+)RGD
CHM1_11676,594,522 - 76,618,256 (+)NCBI
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011522921   ⟹   XP_011521223
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,119,002 - 75,172,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_024450168   ⟹   XP_024305936
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
Sequence:
RefSeq Acc Id: XM_047433668   ⟹   XP_047289624
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,172,234 (+)NCBI
RefSeq Acc Id: XM_047433669   ⟹   XP_047289625
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,149,051 - 75,172,234 (+)NCBI
RefSeq Acc Id: XM_047433670   ⟹   XP_047289626
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,159,153 - 75,172,234 (+)NCBI
RefSeq Acc Id: XM_054379708   ⟹   XP_054235683
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01681,165,700 - 81,218,965 (+)NCBI
RefSeq Acc Id: XM_054379709   ⟹   XP_054235684
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01681,195,776 - 81,218,965 (+)NCBI
RefSeq Acc Id: XM_054379710   ⟹   XP_054235685
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
RefSeq Acc Id: XM_054379711   ⟹   XP_054235686
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01681,195,249 - 81,218,965 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001305398 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305400 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305401 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305402 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305403 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305404 (Get FASTA)   NCBI Sequence Viewer  
  NP_001305405 (Get FASTA)   NCBI Sequence Viewer  
  NP_710155 (Get FASTA)   NCBI Sequence Viewer  
  XP_011521223 (Get FASTA)   NCBI Sequence Viewer  
  XP_024305936 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289624 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289625 (Get FASTA)   NCBI Sequence Viewer  
  XP_047289626 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235683 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235684 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235685 (Get FASTA)   NCBI Sequence Viewer  
  XP_054235686 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH33774 (Get FASTA)   NCBI Sequence Viewer  
  AAH64604 (Get FASTA)   NCBI Sequence Viewer  
  AAI13864 (Get FASTA)   NCBI Sequence Viewer  
  AAI14472 (Get FASTA)   NCBI Sequence Viewer  
  AAI27185 (Get FASTA)   NCBI Sequence Viewer  
  BAC04417 (Get FASTA)   NCBI Sequence Viewer  
  BAF84061 (Get FASTA)   NCBI Sequence Viewer  
  BAG59181 (Get FASTA)   NCBI Sequence Viewer  
  EAW95662 (Get FASTA)   NCBI Sequence Viewer  
  EAW95663 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000333192
  ENSP00000333192.4
  ENSP00000377080
  ENSP00000377080.2
  ENSP00000454286.1
  ENSP00000455627
  ENSP00000455627.1
  ENSP00000457044
  ENSP00000457044.1
  ENSP00000457941
  ENSP00000457941.1
GenBank Protein Q6P2D0 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_710155   ⟸   NM_153688
- Peptide Label: isoform 1
- UniProtKB: Q8N188 (UniProtKB/Swiss-Prot),   B4DKG9 (UniProtKB/Swiss-Prot),   A8K5Q7 (UniProtKB/Swiss-Prot),   Q8N9F9 (UniProtKB/Swiss-Prot),   Q6P2D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_011521223   ⟸   XM_011522921
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: NP_001305398   ⟸   NM_001318469
- Peptide Label: isoform 1
- UniProtKB: Q8N188 (UniProtKB/Swiss-Prot),   B4DKG9 (UniProtKB/Swiss-Prot),   A8K5Q7 (UniProtKB/Swiss-Prot),   Q8N9F9 (UniProtKB/Swiss-Prot),   Q6P2D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001305402   ⟸   NM_001318473
- Peptide Label: isoform 3
- UniProtKB: Q6P2D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001305400   ⟸   NM_001318471
- Peptide Label: isoform 2
- UniProtKB: J3KNQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001305405   ⟸   NM_001318476
- Peptide Label: isoform 4
- UniProtKB: H3BV40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001305403   ⟸   NM_001318474
- Peptide Label: isoform 3
- UniProtKB: Q6P2D0 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001305401   ⟸   NM_001318472
- Peptide Label: isoform 2
- UniProtKB: J3KNQ1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001305404   ⟸   NM_001318475
- Peptide Label: isoform 4
- UniProtKB: H3BV40 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_024305936   ⟸   XM_024450168
- Peptide Label: isoform X4
- UniProtKB: H3BV40 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000457941   ⟸   ENST00000464850
Ensembl Acc Id: ENSP00000333192   ⟸   ENST00000332307
Ensembl Acc Id: ENSP00000457044   ⟸   ENST00000570010
Ensembl Acc Id: ENSP00000377080   ⟸   ENST00000393430
Ensembl Acc Id: ENSP00000455627   ⟸   ENST00000567481
Ensembl Acc Id: ENSP00000454286   ⟸   ENST00000568079
RefSeq Acc Id: XP_047289624   ⟸   XM_047433668
- Peptide Label: isoform X1
RefSeq Acc Id: XP_047289625   ⟸   XM_047433669
- Peptide Label: isoform X3
- UniProtKB: Q8N188 (UniProtKB/Swiss-Prot),   Q6P2D0 (UniProtKB/Swiss-Prot),   B4DKG9 (UniProtKB/Swiss-Prot),   A8K5Q7 (UniProtKB/Swiss-Prot),   Q8N9F9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_047289626   ⟸   XM_047433670
- Peptide Label: isoform X3
- UniProtKB: J3KNQ1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054235683   ⟸   XM_054379708
- Peptide Label: isoform X2
RefSeq Acc Id: XP_054235685   ⟸   XM_054379710
- Peptide Label: isoform X3
- UniProtKB: Q8N188 (UniProtKB/Swiss-Prot),   Q6P2D0 (UniProtKB/Swiss-Prot),   B4DKG9 (UniProtKB/Swiss-Prot),   A8K5Q7 (UniProtKB/Swiss-Prot),   Q8N9F9 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_054235686   ⟸   XM_054379711
- Peptide Label: isoform X3
RefSeq Acc Id: XP_054235684   ⟸   XM_054379709
- Peptide Label: isoform X3
- UniProtKB: Q8N188 (UniProtKB/Swiss-Prot),   Q6P2D0 (UniProtKB/Swiss-Prot),   B4DKG9 (UniProtKB/Swiss-Prot),   A8K5Q7 (UniProtKB/Swiss-Prot),   Q8N9F9 (UniProtKB/Swiss-Prot)
Protein Domains
C2H2-type   KRAB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6P2D0-F1-model_v2 AlphaFold Q6P2D0 1-407 view protein structure

Promoters
RGD ID:6793622
Promoter ID:HG_KWN:24262
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:NM_153688,   UC002FDP.1,   UC002FDQ.1,   UC010CGS.1,   UC010CGT.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361673,739,866 - 73,740,366 (+)MPROMDB
RGD ID:7232843
Promoter ID:EPDNEW_H22167
Type:initiation region
Name:ZFP1_2
Description:ZFP1 zinc finger protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22168  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,119,411 - 75,119,471EPDNEW
RGD ID:7232847
Promoter ID:EPDNEW_H22168
Type:initiation region
Name:ZFP1_1
Description:ZFP1 zinc finger protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H22167  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381675,148,524 - 75,148,584EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:23328 AgrOrtholog
COSMIC ZFP1 COSMIC
Ensembl Genes ENSG00000184517 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000332307 ENTREZGENE
  ENST00000332307.4 UniProtKB/TrEMBL
  ENST00000393430 ENTREZGENE
  ENST00000393430.6 UniProtKB/Swiss-Prot
  ENST00000464850 ENTREZGENE
  ENST00000464850.5 UniProtKB/TrEMBL
  ENST00000567481 ENTREZGENE
  ENST00000567481.1 UniProtKB/TrEMBL
  ENST00000568079.5 UniProtKB/TrEMBL
  ENST00000570010 ENTREZGENE
  ENST00000570010.6 UniProtKB/Swiss-Prot
Gene3D-CATH 6.10.140.140 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Classic Zinc Finger UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
GTEx ENSG00000184517 GTEx
HGNC ID HGNC:23328 ENTREZGENE
Human Proteome Map ZFP1 Human Proteome Map
InterPro KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  KRAB_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Krueppel_C2H2_ZnF UniProtKB/TrEMBL
  Znf_C2H2_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_C2H2_type UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:162239 UniProtKB/Swiss-Prot
NCBI Gene 162239 ENTREZGENE
OMIM 617230 OMIM
PANTHER GASTRULA ZINC FINGER PROTEIN XLCGF49.1-LIKE-RELATED UniProtKB/TrEMBL
  KRAB DOMAIN C2H2 ZINC FINGER UniProtKB/TrEMBL
  TRANSCRIPTIONAL REPRESSOR PROTEIN YY UniProtKB/TrEMBL
  ZINC FINGER AND SCAN DOMAIN-CONTAINING UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 715 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC FINGER PROTEIN 939 UniProtKB/TrEMBL
Pfam KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  zf-C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA134882678 PharmGKB
PROSITE KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZINC_FINGER_C2H2_2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART KRAB UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_C2H2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF109640 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SSF57667 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A8K5Q7 ENTREZGENE
  B4DKG9 ENTREZGENE
  H3BM94_HUMAN UniProtKB/TrEMBL
  H3BV40 ENTREZGENE, UniProtKB/TrEMBL
  J3KNQ1 ENTREZGENE, UniProtKB/TrEMBL
  Q29RW8_HUMAN UniProtKB/TrEMBL
  Q6P2D0 ENTREZGENE
  Q8N188 ENTREZGENE
  Q8N9F9 ENTREZGENE
  ZFP1_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A8K5Q7 UniProtKB/Swiss-Prot
  B4DKG9 UniProtKB/Swiss-Prot
  Q8N188 UniProtKB/Swiss-Prot
  Q8N9F9 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-12-04 ZFP1  ZFP1 zinc finger protein    zinc finger protein 1 homolog (mouse)  Symbol and/or name change 5135510 APPROVED