IGKV2OR2-8 (immunoglobulin kappa variable 2/OR2-8 (pseudogene)) - Rat Genome Database

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Gene: IGKV2OR2-8 (immunoglobulin kappa variable 2/OR2-8 (pseudogene)) Homo sapiens
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Symbol: IGKV2OR2-8
Name: immunoglobulin kappa variable 2/OR2-8 (pseudogene)
RGD ID: 1351765
HGNC Page HGNC:5811
Description:
Type: pseudo (Ensembl: IG_V_pseudogene)
RefSeq Status: INFERRED
Previously known as: IGKV2/OR2-8; IGKV2OR28
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38297,331,411 - 97,332,505 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl297,376,674 - 97,376,973 (+)EnsemblGRCh38hg38GRCh38
GRCh37298,041,194 - 98,042,288 (+)NCBIGRCh37GRCh37hg19GRCh37
Cytogenetic Map2q11.2NCBI
T2T-CHM13v2.0297,838,040 - 97,839,134 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:2111145  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:325
Count of miRNA genes:305
Interacting mature miRNAs:323
Transcripts:ENST00000605673
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 1 1 1 1
Below cutoff 49 12 5 17 41 15 7 9 2 2 12 17 7 11

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000558710
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl297,376,674 - 97,376,973 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC IGKV2OR2-8 COSMIC
Ensembl Genes ENSG00000278537 Ensembl
GTEx ENSG00000278537 GTEx
HGNC ID HGNC:5811 ENTREZGENE
Human Proteome Map IGKV2OR2-8 Human Proteome Map
NCBI Gene IGKV2OR2-8 ENTREZGENE
PharmGKB PA35388 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 IGKV2OR2-8  immunoglobulin kappa variable 2/OR2-8 (pseudogene)  IGKV2OR2-8  immunoglobulin kappa variable 2/OR2-8 pseudogene  Symbol and/or name change 5135510 APPROVED