TRGVA (T cell receptor gamma variable A (pseudogene)) - Rat Genome Database

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Gene: TRGVA (T cell receptor gamma variable A (pseudogene)) Homo sapiens
Analyze
Symbol: TRGVA
Name: T cell receptor gamma variable A (pseudogene)
RGD ID: 1351637
HGNC Page HGNC:12296
Description:
Type: pseudo (Ensembl: TR_V_pseudogene)
RefSeq Status: VALIDATED
Previously known as: TCRGVA; V5P
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38738,322,446 - 38,322,863 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl738,322,446 - 38,322,730 (-)EnsemblGRCh38hg38GRCh38
GRCh37738,362,047 - 38,362,464 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36738,328,572 - 38,328,989 (-)NCBINCBI36Build 36hg18NCBI36
Celera738,349,885 - 38,350,302 (-)NCBICelera
Cytogenetic Map7p14.1NCBI
HuRef738,245,782 - 38,246,199 (-)NCBIHuRef
CHM1_1738,364,679 - 38,365,096 (-)NCBICHM1_1
T2T-CHM13v2.0738,479,370 - 38,479,787 (-)NCBIT2T-CHM13v2.0
CRA_TCAGchr7v2738,399,729 - 38,400,146 (-)NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:2527426   PMID:2969332  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:247
Count of miRNA genes:239
Interacting mature miRNAs:246
Transcripts:ENST00000413819
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage
High
Medium
Low 29 270 42 13 430 13 64 11 35 30 122 149 34 36
Below cutoff 395 568 323 127 561 97 519 218 384 103 382 385 30 289 266

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000413819
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl738,322,446 - 38,322,730 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC TRGVA COSMIC
Ensembl Genes ENSG00000225992 Ensembl
GTEx ENSG00000225992 GTEx
HGNC ID HGNC:12296 ENTREZGENE
Human Proteome Map TRGVA Human Proteome Map
NCBI Gene 6986 ENTREZGENE
PharmGKB PA36976 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 TRGVA  T cell receptor gamma variable A (pseudogene)  TRGVA  T cell receptor gamma variable A pseudogene  Symbol and/or name change 5135510 APPROVED