FKBP1AP3 (FKBP prolyl isomerase 1A pseudogene 3) - Rat Genome Database

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Gene: FKBP1AP3 (FKBP prolyl isomerase 1A pseudogene 3) Homo sapiens
Analyze
Symbol: FKBP1AP3
Name: FKBP prolyl isomerase 1A pseudogene 3
RGD ID: 1351220
HGNC Page HGNC:3716
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: FK506 binding protein 1A pseudogene 3; FKBP12; FKBP1P3
Related Functional Gene: FKBP1A  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381346,505,079 - 46,508,509 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1346,505,118 - 46,505,436 (+)EnsemblGRCh38hg38GRCh38
GRCh371347,079,214 - 47,082,644 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361345,977,251 - 45,977,577 (+)NCBINCBI36Build 36hg18NCBI36
Celera1328,135,042 - 28,138,470 (+)NCBICelera
Cytogenetic Map13q14.13NCBI
HuRef1327,871,856 - 27,875,285 (+)NCBIHuRef
CHM1_11347,046,467 - 47,049,892 (+)NCBICHM1_1
T2T-CHM13v2.01345,725,938 - 45,729,364 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References
Additional References at PubMed
PMID:1716149   PMID:38252872  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:222
Count of miRNA genes:216
Interacting mature miRNAs:222
Transcripts:ENST00000423650
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2292823PRSTS88_HProstate tumor susceptibility QTL 88 (human)Prostate tumor susceptibility134153205867532058Human
1643298BW212_HBody weight QTL 212 (human)2.670.0002Body weightBMI134153205867532058Human


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
37 46 64 45 90 39 68 8 49 6 45 146 156 3 73 16 154 57 3

Sequence


Ensembl Acc Id: ENST00000423650
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1346,505,118 - 46,505,436 (+)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC FKBP1AP3 COSMIC
Ensembl Genes ENSG00000230243 Ensembl
GTEx ENSG00000230243 GTEx
HGNC ID HGNC:3716 ENTREZGENE
Human Proteome Map FKBP1AP3 Human Proteome Map
NCBI Gene 2284 ENTREZGENE
PharmGKB PA28157 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-11-06 FKBP1AP3  FKBP prolyl isomerase 1A pseudogene 3    FK506 binding protein 1A pseudogene 3  Symbol and/or name change 5135510 APPROVED
2015-11-17 FKBP1AP3  FK506 binding protein 1A pseudogene 3    FK506 binding protein 1A, 12kDa pseudogene 3  Symbol and/or name change 5135510 APPROVED
2011-07-27 FKBP1AP3  FK506 binding protein 1A, 12kDa pseudogene 3  FKBP1P3  FK506 binding protein 1 pseudogene 3  Symbol and/or name change 5135510 APPROVED