GSTA7P (glutathione S-transferase alpha 7, pseudogene) - Rat Genome Database

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Gene: GSTA7P (glutathione S-transferase alpha 7, pseudogene) Homo sapiens
Analyze
Symbol: GSTA7P
Name: glutathione S-transferase alpha 7, pseudogene
RGD ID: 1350888
HGNC Page HGNC:4631
Description: INTERACTS WITH benzo[a]pyrene; rifampicin; sodium arsenite
Type: pseudo (Ensembl: unprocessed_pseudogene)
RefSeq Status: PROVISIONAL
Previously known as: GSTAP2; GSTAP6
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38652,739,463 - 52,745,159 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl652,739,590 - 52,744,656 (-)EnsemblGRCh38hg38GRCh38
GRCh37652,604,261 - 52,609,957 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36652,712,220 - 52,717,916 (-)NCBINCBI36Build 36hg18NCBI36
Celera654,265,354 - 54,271,050 (-)NCBICelera
Cytogenetic Map6p12.2NCBI
HuRef652,435,479 - 52,441,175 (-)NCBIHuRef
CHM1_1652,606,489 - 52,612,185 (-)NCBICHM1_1
T2T-CHM13v2.0652,578,245 - 52,583,941 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1329668   PMID:16344560  


Genomics

Variants

.
Variants in GSTA7P
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:52
Count of miRNA genes:51
Interacting mature miRNAs:52
Transcripts:ENST00000438425
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 1 114 111 1 111 54 5
Low 118 82 499 242 159 242 16 7 142 304 148 1 5 3
Below cutoff 244 359 95 107 250 63 262 55 117 42 229 170 45 105 139 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000438425
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl652,739,590 - 52,744,656 (-)Ensembl
RefSeq Acc Id: NR_033760
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38652,739,463 - 52,745,159 (-)NCBI
GRCh37652,604,261 - 52,609,957 (-)RGD
Celera654,265,354 - 54,271,050 (-)RGD
HuRef652,435,479 - 52,441,175 (-)ENTREZGENE
CHM1_1652,606,489 - 52,612,185 (-)NCBI
T2T-CHM13v2.0652,578,245 - 52,583,941 (-)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
COSMIC GSTA7P COSMIC
Ensembl Genes ENSG00000237674 Ensembl
GTEx ENSG00000237674 GTEx
HGNC ID HGNC:4631 ENTREZGENE
Human Proteome Map GSTA7P Human Proteome Map
NCBI Gene 730152 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2011-07-27 GSTA7P  glutathione S-transferase alpha 7, pseudogene  GSTAP2  glutathione S-transferase A pseudogene 2  Symbol and/or name change 5135510 APPROVED