SRSF10P1 (serine and arginine rich splicing factor 10 pseudogene 1) - Rat Genome Database

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Gene: SRSF10P1 (serine and arginine rich splicing factor 10 pseudogene 1) Homo sapiens
Analyze
Symbol: SRSF10P1
Name: serine and arginine rich splicing factor 10 pseudogene 1
RGD ID: 1350808
HGNC Page HGNC:31002
Description:
Type: pseudo (Ensembl: processed_pseudogene)
RefSeq Status: INFERRED
Previously known as: FUSIP1P; HsT2687; serine/arginine-rich splicing factor 10 pseudogene 1; SFRS13AP1
Related Functional Gene: SRSF10  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381851,158,202 - 51,159,443 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1851,158,282 - 51,159,383 (-)EnsemblGRCh38hg38GRCh38
GRCh371848,684,572 - 48,685,813 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361846,938,646 - 46,939,721 (-)NCBINCBI36Build 36hg18NCBI36
Celera1845,541,381 - 45,542,486 (-)NCBICelera
Cytogenetic Map18q21.2NCBI
HuRef1845,540,051 - 45,541,155 (-)NCBIHuRef
CHM1_11848,680,045 - 48,681,131 (-)NCBICHM1_1
T2T-CHM13v2.01851,359,954 - 51,361,197 (-)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in SRSF10P1
1 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:167
Count of miRNA genes:161
Interacting mature miRNAs:167
Transcripts:ENST00000588646
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium
Low 4 9 9 2 158 2 19 16 31 7 32 15 2 6 1
Below cutoff 427 540 439 145 551 104 906 309 875 122 505 471 47 232 464 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000588646
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1851,158,282 - 51,159,383 (-)Ensembl

Additional Information

Database Acc Id Source(s)
COSMIC SRSF10P1 COSMIC
Ensembl Genes ENSG00000267717 Ensembl
GTEx ENSG00000267717 GTEx
HGNC ID HGNC:31002 ENTREZGENE
Human Proteome Map SRSF10P1 Human Proteome Map
NCBI Gene 100130799 ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-06-14 SRSF10P1  serine and arginine rich splicing factor 10 pseudogene 1    serine/arginine-rich splicing factor 10 pseudogene 1  Symbol and/or name change 5135510 APPROVED
2011-10-04 SRSF10P1  serine/arginine-rich splicing factor 10 pseudogene 1  FUSIP1P  FUS interacting protein (serine-arginine rich) 1 pseudogene  Symbol and/or name change 5135510 APPROVED