MT1JP (metallothionein 1J, pseudogene) - Rat Genome Database

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Gene: MT1JP (metallothionein 1J, pseudogene) Homo sapiens
Analyze
Symbol: MT1JP
Name: metallothionein 1J, pseudogene
RGD ID: 1350386
HGNC Page HGNC:7402
Description: INTERACTS WITH aristolochic acid A; arsenous acid; cadmium atom
Type: pseudo (Ensembl: transcribed_unprocessed_pseudogene)
RefSeq Status: VALIDATED
Previously known as: metallothionein 1j; metallothionein 1N, pseudogene; MT1; MT1J; MT1NP; MTB
Related Functional Gene: MT1M  
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381656,635,739 - 56,637,086 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,635,739 - 56,637,086 (+)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl1656,635,818 - 56,636,943 (+)EnsemblGRCh38hg38GRCh38
GRCh371656,669,651 - 56,670,998 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361655,226,738 - 55,228,499 (+)NCBINCBI36Build 36hg18NCBI36
Build 341655,227,151 - 55,228,499NCBI
Celera1641,166,689 - 41,168,450 (+)NCBICelera
Cytogenetic Map16q13NCBI
HuRef1642,539,105 - 42,540,452 (+)NCBIHuRef
CHM1_11658,076,578 - 58,077,925 (+)NCBICHM1_1
T2T-CHM13v2.01662,430,718 - 62,432,065 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. GOAs Human GO annotations GOA_HUMAN data from the GO Consortium
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:2286373   PMID:2581970   PMID:8049263   PMID:12477932   PMID:26909858   PMID:29720189   PMID:30024609   PMID:31342947   PMID:32196384   PMID:33557774   PMID:33974236   PMID:35703312  


Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:337
Count of miRNA genes:169
Interacting mature miRNAs:173
Transcripts:ENST00000444023, ENST00000563395, ENST00000564564
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
UniSTS:484175  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371656,669,675 - 56,670,908UniSTSGRCh37
Celera1641,167,127 - 41,168,360UniSTS
HuRef2030,583,253 - 30,583,537UniSTS
HuRef1642,539,129 - 42,540,362UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system sensory system adipose tissue appendage entire extraembryonic component
High
Medium 116 231 169 78 7 74 304 48 103 2 27 201 4 276 246
Low 1506 1374 943 367 221 249 2376 989 1841 124 585 993 124 775 1537
Below cutoff 659 728 485 114 464 82 1327 994 1551 149 598 265 34 149 876 1

Sequence


Reference Sequences
RefSeq Acc Id: ENST00000444023
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,635,818 - 56,636,943 (+)Ensembl
RefSeq Acc Id: ENST00000563395
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,635,739 - 56,637,086 (+)Ensembl
RefSeq Acc Id: ENST00000564564
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1656,635,763 - 56,636,996 (+)Ensembl
RefSeq Acc Id: NR_036677
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381656,635,739 - 56,637,086 (+)NCBI
GRCh371656,669,651 - 56,670,998 (+)ENTREZGENE
HuRef1642,539,105 - 42,540,452 (+)ENTREZGENE
CHM1_11658,076,578 - 58,077,925 (+)NCBI
T2T-CHM13v2.01662,430,718 - 62,432,065 (+)NCBI
Sequence:
Protein Sequences
GenBank Protein AAO32954 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences


Additional Information

Database Acc Id Source(s)
COSMIC MT1JP COSMIC
Ensembl Genes ENSG00000255986 Ensembl
  ENSG00000290662 Ensembl, ENTREZGENE
Ensembl Transcript ENST00000563395 ENTREZGENE
GTEx ENSG00000255986 GTEx
  ENSG00000290662 GTEx
HGNC ID HGNC:7402 ENTREZGENE
Human Proteome Map MT1JP Human Proteome Map
NCBI Gene 4498 ENTREZGENE
OMIM 156356 OMIM
PharmGKB PA31207 PharmGKB


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-02 MT1JP  metallothionein 1J, pseudogene  MT1NP  metallothionein 1N, pseudogene  Data merged from RGD:1346190 737654 PROVISIONAL
2011-07-27 MT1JP  metallothionein 1J, pseudogene  MT1JP  metallothionein 1J (pseudogene)  Symbol and/or name change 5135510 APPROVED